Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microscopy" keyword
Top 4.9% on pypi.org
38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
ome-types 0.5.1
Python dataclasses for the OME data model38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
aicsimageio 4.14.0
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
rosettasciio 0.4
Reading and writing scientific file formats4 versions - Latest release: about 2 months ago - 2 dependent packages - 1 dependent repositories - 13.4 thousand downloads last month - 42 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
46 versions - Latest release: 20 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
hyperspy 2.1.0
Multidimensional data analysis toolbox46 versions - Latest release: 20 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
Top 2.9% on pypi.org
41 versions - Latest release: about 1 month ago - 15 dependent packages - 11 dependent repositories - 10.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
nd2 0.10.1
Yet another nd2 (Nikon NIS Elements) file reader41 versions - Latest release: about 1 month ago - 15 dependent packages - 11 dependent repositories - 10.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
useq-schema 0.4.7
Schema for multi-dimensional microscopy experiments20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 6.79 thousand downloads last month - 311 stars on GitHub - 4 maintainers
cucim 23.10.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 6.79 thousand downloads last month - 311 stars on GitHub - 4 maintainers
Top 8.6% on pypi.org
45 versions - Latest release: 24 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
pymmcore-plus 0.9.5
pymmcore superset providing improved APIs, event handling, and a pure python acquisition engine45 versions - Latest release: 24 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
bioio-base 1.0.0
Typing, base classes, and more for BioIO projects.6 versions - Latest release: 6 months ago - 13 dependent packages - 1 dependent repositories - 6.31 thousand downloads last month - 0 stars on GitHub - 2 maintainers
Top 7.9% on pypi.org
10 versions - Latest release: 20 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
hyperspy-gui-ipywidgets 2.0.1
ipywidgets GUI elements for the HyperSpy framework.10 versions - Latest release: 20 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
brainglobe-atlasapi 2.0.6
A lightweight python module to interact with and generate atlases for systems neuroscience.7 versions - Latest release: 13 days ago - 8 dependent packages - 5.38 thousand downloads last month - 113 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
29 versions - Latest release: about 3 years ago - 15 dependent packages - 35 dependent repositories - 4.83 thousand downloads last month - 43 stars on GitHub - 2 maintainers
nd2reader 3.3.0
A tool for reading ND2 files produced by NIS Elements29 versions - Latest release: about 3 years ago - 15 dependent packages - 35 dependent repositories - 4.83 thousand downloads last month - 43 stars on GitHub - 2 maintainers
Top 4.0% on pypi.org
326 versions - Latest release: 17 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
cloud-volume 8.33.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...326 versions - Latest release: 17 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
bioio-bioformats 1.0.0
A BioIO reader for reading bioformats formatted images.2 versions - Latest release: 6 months ago - 1 dependent package - 4.34 thousand downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
18 versions - Latest release: 20 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
hyperspy-gui-traitsui 2.0.1
traitsui GUI elements for the HyperSpy framework.18 versions - Latest release: 20 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
72 versions - Latest release: 16 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
pyclesperanto-prototype 0.24.4
GPU-accelerated image processing in python using OpenCL72 versions - Latest release: 16 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
cucim-cu12 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...3 versions - Latest release: about 2 months ago - 2 dependent packages - 2.92 thousand downloads last month - 311 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
ncempy 1.11.1
openNCEM's Python Package19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
cellfinder 1.2.0
Automated 3D cell detection in large microscopy images97 versions - Latest release: 13 days ago - 3 dependent packages - 2.46 thousand downloads last month - 170 stars on GitHub - 2 maintainers
Top 5.6% on pypi.org
10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.07 thousand downloads last month - 113 stars on GitHub - 4 maintainers
bg-atlasapi 1.0.3
A lightweight python module to interact with atlases for systems neuroscience10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.07 thousand downloads last month - 113 stars on GitHub - 4 maintainers
Top 6.3% on pypi.org
26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
pyxem 0.17.0
multi-dimensional diffraction microscopy26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
ngff-zarr 0.8.1
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr impleme...24 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.62 thousand downloads last month - 18 stars on GitHub - 1 maintainer
brainreg 1.0.9
Automated multi-atlas whole-brain microscopy registration45 versions - Latest release: 13 days ago - 6 dependent packages - 1 dependent repositories - 1.6 thousand downloads last month - 108 stars on GitHub - 2 maintainers
exspy 0.2
EELS and EDS analysis with the HyperSpy framework2 versions - Latest release: about 2 months ago - 2 dependent packages - 1.28 thousand downloads last month - 8 stars on GitHub - 1 maintainer
Top 9.1% on pypi.org
32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
picassosr 0.6.9
A collection of tools for painting super-resolution images32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
Top 6.6% on pypi.org
30 versions - Latest release: 12 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
libertem 0.14.0
Open pixelated STEM framework30 versions - Latest release: 12 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
basicpy 1.1.0
A python package for background and shading correction of optical microscopy images8 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 851 downloads last month - 53 stars on GitHub - 3 maintainers
pytemlib 0.6.2019
pyTEM: TEM Data Quantification library through a model-based approach74 versions - Latest release: about 5 years ago - 1 dependent repositories - 829 downloads last month - 16 stars on GitHub - 2 maintainers
uc2-rest 2.1.0
This pacage will help you to drive the ESP32-driven microscopy control modules from UC235 versions - Latest release: about 1 year ago - 1 dependent package - 814 downloads last month - 7 stars on GitHub - 1 maintainer
pymmcore-widgets 0.7.1
A set of Qt-based widgets onto the pymmcore-plus model19 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 781 downloads last month - 8 stars on GitHub - 2 maintainers
cell-tracking-bc 2024.1 💰
Base Classes for Cell Tracking in Microscopy89 versions - Latest release: 4 months ago - 739 downloads last month - 6,321 stars on GitHub - 1 maintainer
pyapr 1.0.7
Content-adaptive image processing using the Adaptive Particle Representation11 versions - Latest release: 7 months ago - 2 dependent packages - 1 dependent repositories - 737 downloads last month - 14 stars on GitHub - 1 maintainer
psfmodels 0.3.3
Scalar and vectorial models of the microscope point spread function (PSF).6 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 689 downloads last month - 33 stars on GitHub - 1 maintainer
pie 1.0.1
Colony recognition and growth measurement for microbial imaging2 versions - Latest release: over 1 year ago - 3 dependent repositories - 634 downloads last month - 4 stars on GitHub - 1 maintainer
bioio-ome-tiff 1.0.0
A BioIO reader plugin for reading tiff files in the OME format.2 versions - Latest release: 6 months ago - 2 dependent packages - 613 downloads last month - 0 stars on GitHub - 1 maintainer
cytominer-database 0.3.4
A package for storing morphological profiling data.11 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 611 downloads last month - 9 stars on GitHub - 5 maintainers
bioio-czi 1.0.0
A Bioio reader plugin for reading czi images.2 versions - Latest release: 6 months ago - 1 dependent package - 592 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-lif 1.0.0
A BioIO reader plugin for reading LIF (Leica Image File) images.2 versions - Latest release: 6 months ago - 587 downloads last month - 0 stars on GitHub - 1 maintainer
bioio-tifffile 1.0.0
A BioIO reader plugin for reading TIFFs using Tifffile2 versions - Latest release: 6 months ago - 2 dependent packages - 586 downloads last month - 0 stars on GitHub - 1 maintainer
atomai 0.7.8
Deep and machine learning for atom-resolved data29 versions - Latest release: 8 months ago - 1 dependent repositories - 530 downloads last month - 164 stars on GitHub - 1 maintainer
qpimage 0.9.2
library for manipulating quantitative phase images46 versions - Latest release: 7 months ago - 1 dependent package - 6 dependent repositories - 503 downloads last month - 0 stars on GitHub - 2 maintainers
pco 2.1.2
This class provides methods for using pco cameras.10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 499 downloads last month - 1 maintainer
napari-aicsimageio 0.7.2
AICSImageIO bindings for napari19 versions - Latest release: almost 2 years ago - 7 dependent packages - 1 dependent repositories - 497 downloads last month - 33 stars on GitHub - 1 maintainer
pycytominer 1.1.0
Python package for processing image-based profiling data5 versions - Latest release: 3 months ago - 1 dependent repositories - 485 downloads last month - 60 stars on GitHub - 1 maintainer
pma-python 2.0.0.177
Universal viewing of digital microscopy, whole slide imaging and digital pathology data108 versions - Latest release: 2 months ago - 1 dependent repositories - 439 downloads last month - 27 stars on GitHub - 2 maintainers
holospy 0.1.1
Analysis of (off-axis) electron holography data with HyperSpy.4 versions - Latest release: 6 months ago - 1 dependent package - 432 downloads last month - 6 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
86 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
pycroscopy 0.63.2
Python library for scientific analysis of microscopy data86 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
Top 7.9% on pypi.org
25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
atomap 0.4.0
Library for analysing atomic resolution images25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
qpformat 0.14.4
library for opening quantitative phase imaging data47 versions - Latest release: over 1 year ago - 1 dependent repositories - 392 downloads last month - 1 stars on GitHub - 2 maintainers
utoolbox 0.6.7
Metapackage for uToolbox, a Python image processing package for LLSM.79 versions - Latest release: almost 4 years ago - 1 dependent repositories - 391 downloads last month - 0 stars on GitHub - 1 maintainer
segmentation 0.2.2
Mixture model segmentation6 versions - Latest release: about 3 years ago - 5 dependent repositories - 373 downloads last month - 1 stars on GitHub - 1 maintainer
sxdm 1.0.0
Tools for analyzing Scanning X-ray Diffraction Microscopy data26 versions - Latest release: over 2 years ago - 1 dependent repositories - 363 downloads last month - 1 stars on GitHub - 1 maintainer
nanomesh 0.9.1
Creates 3d meshes from microscopy experimental data10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 361 downloads last month - 26 stars on GitHub - 1 maintainer
bioio-nd2 1.0.0
A BioIO reader plugin for reading ND2 images.2 versions - Latest release: 6 months ago - 360 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
18 versions - Latest release: over 7 years ago - 1 dependent package - 6 dependent repositories - 354 downloads last month - 3 maintainers
sima 1.3.2
Software for analysis of sequential imaging data18 versions - Latest release: over 7 years ago - 1 dependent package - 6 dependent repositories - 354 downloads last month - 3 maintainers
cellfinder-core 1.0.0
Automated 3D cell detection in large microscopy images32 versions - Latest release: 5 months ago - 4 dependent packages - 1 dependent repositories - 352 downloads last month - 19 stars on GitHub - 1 maintainer
bmlab 0.8.0
Library for Brillouin microscopy data analysis37 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 350 downloads last month - 2 stars on GitHub - 2 maintainers
nrefocus 0.5.3
numerical focusing (refocusing, autofocusing) of complex wave fields19 versions - Latest release: over 1 year ago - 2 dependent packages - 5 dependent repositories - 346 downloads last month - 7 stars on GitHub - 2 maintainers
fastddm 0.3.10
A Python/C++ library for the analysis of Differential Dynamic Microscopy experiments5 versions - Latest release: about 2 months ago - 344 downloads last month - 2 stars on GitHub - 1 maintainer
ashlar 1.18.0
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration34 versions - Latest release: 4 months ago - 2 dependent repositories - 338 downloads last month - 111 stars on GitHub - 1 maintainer
libertem-blobfinder 0.6.1
LiberTEM correlation and refinement library5 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 329 downloads last month - 5 stars on GitHub - 2 maintainers
simtk 0.1.0
sim: structured illumination microscopy1 version - Latest release: over 3 years ago - 2 dependent repositories - 324 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 323 downloads last month - 19 stars on GitHub - 2 maintainers
intern 1.4.1
Python SDK for interacting with neuroscience data via the Boss API.24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 323 downloads last month - 19 stars on GitHub - 2 maintainers
mikro-napari 0.1.63
A napari plugin to interact with and provide functionality for a connected arkitekt server50 versions - Latest release: 4 months ago - 1 dependent repositories - 316 downloads last month - 0 stars on GitHub - 1 maintainer
qpsphere 0.5.9
library for analyzing spherical objects in phase imaging28 versions - Latest release: about 2 years ago - 2 dependent repositories - 310 downloads last month - 4 stars on GitHub - 2 maintainers
drymass 0.12.0
manipulation and analysis of phase microscopy data41 versions - Latest release: about 2 years ago - 1 dependent repositories - 307 downloads last month - 2 stars on GitHub - 2 maintainers
tttrlib 0.24.3
Read, write & process time-tagged time-resolved (TTTR) data.5 versions - Latest release: 4 months ago - 307 downloads last month - 18 stars on GitHub - 1 maintainer
bioio-sldy 1.0.1
A BioIO reader plugin for reading 3i slidebook (SLDY) images.4 versions - Latest release: 2 months ago - 299 downloads last month - 0 stars on GitHub - 2 maintainers
czitools 0.7.0
Tools to simplify reading CZI (Carl Zeiss Image) meta and pixel data26 versions - Latest release: 11 days ago - 293 downloads last month - 7 stars on GitHub - 1 maintainer
bioio 1.0.1
Image reading, metadata management, and image writing for Microscopy images in Python4 versions - Latest release: 2 months ago - 3 dependent packages - 285 downloads last month - 16 stars on GitHub - 2 maintainers
utoolbox-core 0.0.22
Core functions for uToolbox.49 versions - Latest release: almost 4 years ago - 2 dependent repositories - 274 downloads last month - 3 stars on GitHub - 1 maintainer
pathml 2.1.1
Tools for computational pathology15 versions - Latest release: 12 months ago - 1 dependent repositories - 265 downloads last month - 364 stars on GitHub - 2 maintainers
deepflash2 0.2.3
A Deep learning pipeline for segmentation of fluorescent labels in microscopy images27 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 258 downloads last month - 56 stars on GitHub - 1 maintainer
cellseg_models_pytorch 0.1.24
Python library for 2D cell/nuclei instance segmentation models written with PyTorch.24 versions - Latest release: 8 months ago - 250 downloads last month - 60 stars on GitHub - 1 maintainer
hyperspyui 1.3.1
Hyperspy Graphical User Interface14 versions - Latest release: about 1 year ago - 1 dependent repositories - 230 downloads last month - 25 stars on GitHub - 2 maintainers
cucim-cu11 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...3 versions - Latest release: about 2 months ago - 225 downloads last month - 311 stars on GitHub - 2 maintainers
pysted 0.0.2
STED image simulator in Python1 version - Latest release: 2 months ago - 202 downloads last month - 8 stars on GitHub - 1 maintainer
biom3d 0.0.38
Biom3d. Framework for easy-to-use biomedical image segmentation.39 versions - Latest release: 2 months ago - 201 downloads last month - 17 stars on GitHub - 1 maintainer
impose 0.4.8
Fit and superimpose shapes from different imaging modalities19 versions - Latest release: 11 days ago - 3 dependent repositories - 193 downloads last month - 1 stars on GitHub - 2 maintainers
ndio 1.1.6
A Python library for open neuroscience data access and manipulation.53 versions - Latest release: over 7 years ago - 3 dependent repositories - 186 downloads last month - 18 stars on GitHub - 1 maintainer
temul-toolkit 0.1.7
Functions for analysis of high resolution electron microscopy and spectroscopy data.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 184 downloads last month - 1 maintainer
palom 2024.4.1
Piecewise alignment for layers of mosaics21 versions - Latest release: 29 days ago - 1 dependent package - 1 dependent repositories - 177 downloads last month - 16 stars on GitHub - 1 maintainer
cenfind 0.14.0
Score cells for centrioles in IF data32 versions - Latest release: 3 months ago - 159 downloads last month - 1 stars on GitHub - 1 maintainer
tigerasi 0.0.26
a lightweight python driver for ASI brand Tiger Controllers21 versions - Latest release: 6 months ago - 157 downloads last month - 5 stars on GitHub - 1 maintainer
nellie 0.1.8
Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cel...9 versions - Latest release: about 1 month ago - 153 downloads last month - 26 stars on GitHub - 1 maintainer
napari-psf-analysis 1.1.3
A plugin to analyse point spread functions (PSFs).16 versions - Latest release: 29 days ago - 1 dependent repositories - 147 downloads last month - 7 stars on GitHub - 1 maintainer
brainreg-napari 0.1.4
Multi-atlas whole-brain microscopy registration12 versions - Latest release: 5 months ago - 2 dependent packages - 140 downloads last month - 13 stars on GitHub - 1 maintainer
fpd 0.2.5
FPD: Fast pixelated detector data storage, analysis and visualisation.20 versions - Latest release: about 2 years ago - 2 dependent repositories - 135 downloads last month - 9 stars on GitLab.com - 1 maintainer
access2thematrix 0.4.4
Scienta Omicron (NanoScience) (NanoTechnology) MATRIX Control System result file accessing tool12 versions - Latest release: about 1 year ago - 1 dependent package - 133 downloads last month - 1 maintainer
boss-ingest 0.12.0
Ingest client for the Boss17 versions - Latest release: about 3 years ago - 1 dependent repositories - 130 downloads last month - 5 stars on GitHub - 2 maintainers
napari-lattice 0.2.7
Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.13 versions - Latest release: about 1 year ago - 127 downloads last month - 11 stars on GitHub - 1 maintainer
xanespy 0.3.3
Tools for analyzing X-ray absorbance spectroscopy data11 versions - Latest release: almost 5 years ago - 1 dependent repositories - 124 downloads last month - 3 stars on GitHub - 1 maintainer
sitkibex 0.5.1
Image registration for iterative fluorescence microscopy3 versions - Latest release: 4 months ago - 122 downloads last month - 16 stars on GitHub - 2 maintainers
pyminflux 0.4.1
Reader, processor, and viewer of MINFLUX raw data.8 versions - Latest release: 18 days ago - 121 downloads last month - 7 stars on GitHub - 1 maintainer
napari-czann-segment 0.0.18
Semantic Segmentation using Deep Learning ONNX models packaged as *.czann files9 versions - Latest release: 8 months ago - 115 downloads last month - 7 stars on GitHub - 1 maintainer
zetastitcher 0.7.0
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light...7 versions - Latest release: almost 2 years ago - 2 dependent repositories - 106 downloads last month - 36 stars on GitHub - 1 maintainer
pyhmsa 0.2.0
Python implementation of the MSA / MAS / AMAS Hyper-Dimensional Data File specification10 versions - Latest release: about 5 years ago - 2 dependent repositories - 102 downloads last month - 2 stars on GitHub - 1 maintainer
nis2pyr 0.6.2
Utility for converting Nikon ND2 files to tiled pyramidal OME TIFF files.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 100 downloads last month - 7 stars on GitHub - 1 maintainer
napari-micromanager 0.1.0
Micro-Manager GUI interface in napari.7 versions - Latest release: 3 months ago - 1 dependent repositories - 93 downloads last month - 57 stars on GitHub - 1 maintainer
ffta 0.3.4
Fast Free Transient Analysis11 versions - Latest release: almost 3 years ago - 1 dependent repositories - 90 downloads last month - 3 stars on GitHub - 1 maintainer
Related Keywords
python
54
image-processing
24
image-analysis
17
scientific-formats
16
dask
16
segmentation
15
scientific-computing
15
image-metadata
15
xarray
14
data analysis
14
imaging
13
neuroscience
13
bioio
13
electron-microscopy
12
STEM
11
brain
10
electron microscopy
10
deep-learning
9
electron
9
hyperspy
9
biology
9
registration
9
fluorescence
9
image
9
image analysis
8
spectroscopy
8
numpy
8
analysis
8
TEM
7
materials-science
7
napari
7
multi-dimensional
7
microanalysis
7
microscope
6
x-ray-spectroscopy
6
microscopy-images
6
connectomics
6
scanning
6
holography
6
hyperspectral
5
EM
5
spatial
5
quantitative-phase-imaging
5
hyperspy-extension
5
atlases
5
database
5
machine-learning
5
pytorch
5
digital-pathology
5
data-analysis
5
digital holographic microscopy
5
quantitative phase imaging
5
gpu
4
medical-imaging
4
cuda
4
connectome
4
physical-sciences
4
data-visualization
4
cells
4
electron energy loss spectroscopy
4
SPM
4
visualisation
4
scientific
4
scipy
4
x-ray
4
cell
4
diffraction
4
tiff
4
format
4
file
4
hmsa
4
gui
4
calcium
4
fluorescence-microscopy-imaging
4
visualization
3
protein
3
reconstruction
3
nd2
3
nikon
3
nis-elements
3
scattering
3
computer-vision
3
monte-carlo-simulation
3
napari-plugin
3
3d
3
boss
3
image-data
3
metadata
3
multidimensional-image-processing
3
nvidia
3
eels
3
micro-manager
3
bioimage-analysis
3
probe
3
X-ray
3
deconvolution
3
python3
3
deep learning
3
physics
3
statistics
3