Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microscopy" keyword
Top 4.0% on pypi.org
326 versions - Latest release: 8 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
cloud-volume 8.33.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...326 versions - Latest release: 8 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
pma-python 2.0.0.177
Universal viewing of digital microscopy, whole slide imaging and digital pathology data108 versions - Latest release: 2 months ago - 1 dependent repositories - 439 downloads last month - 27 stars on GitHub - 2 maintainers
cellfinder 1.2.0
Automated 3D cell detection in large microscopy images97 versions - Latest release: 4 days ago - 3 dependent packages - 2.46 thousand downloads last month - 170 stars on GitHub - 2 maintainers
cell-tracking-bc 2024.1 💰
Base Classes for Cell Tracking in Microscopy89 versions - Latest release: 4 months ago - 739 downloads last month - 6,321 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
86 versions - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
pycroscopy 0.63.2
Python library for scientific analysis of microscopy data86 versions - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 423 downloads last month - 250 stars on GitHub - 2 maintainers
utoolbox 0.6.7
Metapackage for uToolbox, a Python image processing package for LLSM.79 versions - Latest release: almost 4 years ago - 1 dependent repositories - 391 downloads last month - 0 stars on GitHub - 1 maintainer
pytemlib 0.6.2019
pyTEM: TEM Data Quantification library through a model-based approach74 versions - Latest release: about 5 years ago - 1 dependent repositories - 829 downloads last month - 16 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
72 versions - Latest release: 7 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
pyclesperanto-prototype 0.24.4
GPU-accelerated image processing in python using OpenCL72 versions - Latest release: 7 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
aicsimageio 4.14.0
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python70 versions - Latest release: 7 months ago - 45 dependent packages - 30 dependent repositories - 22.2 thousand downloads last month - 190 stars on GitHub - 1 maintainer
ndio 1.1.6
A Python library for open neuroscience data access and manipulation.53 versions - Latest release: over 7 years ago - 3 dependent repositories - 186 downloads last month - 18 stars on GitHub - 1 maintainer
mikro-napari 0.1.63
A napari plugin to interact with and provide functionality for a connected arkitekt server50 versions - Latest release: 4 months ago - 1 dependent repositories - 316 downloads last month - 0 stars on GitHub - 1 maintainer
utoolbox-core 0.0.22
Core functions for uToolbox.49 versions - Latest release: almost 4 years ago - 2 dependent repositories - 274 downloads last month - 3 stars on GitHub - 1 maintainer
qpformat 0.14.4
library for opening quantitative phase imaging data47 versions - Latest release: over 1 year ago - 1 dependent repositories - 392 downloads last month - 1 stars on GitHub - 2 maintainers
qpimage 0.9.2
library for manipulating quantitative phase images46 versions - Latest release: 7 months ago - 1 dependent package - 6 dependent repositories - 503 downloads last month - 0 stars on GitHub - 2 maintainers
Top 2.4% on pypi.org
46 versions - Latest release: 11 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
hyperspy 2.1.0
Multidimensional data analysis toolbox46 versions - Latest release: 11 days ago - 26 dependent packages - 57 dependent repositories - 11.2 thousand downloads last month - 477 stars on GitHub - 3 maintainers
brainreg 1.0.9
Automated multi-atlas whole-brain microscopy registration45 versions - Latest release: 4 days ago - 6 dependent packages - 1 dependent repositories - 1.6 thousand downloads last month - 108 stars on GitHub - 2 maintainers
Top 8.6% on pypi.org
45 versions - Latest release: 15 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
pymmcore-plus 0.9.5
pymmcore superset providing improved APIs, event handling, and a pure python acquisition engine45 versions - Latest release: 15 days ago - 5 dependent packages - 2 dependent repositories - 6.64 thousand downloads last month - 21 stars on GitHub - 1 maintainer
drymass 0.12.0
manipulation and analysis of phase microscopy data41 versions - Latest release: about 2 years ago - 1 dependent repositories - 307 downloads last month - 2 stars on GitHub - 2 maintainers
Top 2.9% on pypi.org
41 versions - Latest release: 27 days ago - 15 dependent packages - 11 dependent repositories - 12.1 thousand downloads last month - 45 stars on GitHub - 1 maintainer
nd2 0.10.1
Yet another nd2 (Nikon NIS Elements) file reader41 versions - Latest release: 27 days ago - 15 dependent packages - 11 dependent repositories - 12.1 thousand downloads last month - 45 stars on GitHub - 1 maintainer
biom3d 0.0.38
Biom3d. Framework for easy-to-use biomedical image segmentation.39 versions - Latest release: about 2 months ago - 713 downloads last month - 17 stars on GitHub - 1 maintainer
Top 4.9% on pypi.org
38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
ome-types 0.5.1
Python dataclasses for the OME data model38 versions - Latest release: 2 months ago - 23 dependent packages - 17 dependent repositories - 33.2 thousand downloads last month - 45 stars on GitHub - 1 maintainer
bmlab 0.8.0
Library for Brillouin microscopy data analysis37 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 350 downloads last month - 2 stars on GitHub - 2 maintainers
uc2-rest 2.1.0
This pacage will help you to drive the ESP32-driven microscopy control modules from UC235 versions - Latest release: about 1 year ago - 1 dependent package - 814 downloads last month - 7 stars on GitHub - 1 maintainer
ashlar 1.18.0
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration34 versions - Latest release: 4 months ago - 2 dependent repositories - 338 downloads last month - 111 stars on GitHub - 1 maintainer
cenfind 0.14.0
Score cells for centrioles in IF data32 versions - Latest release: 3 months ago - 159 downloads last month - 1 stars on GitHub - 1 maintainer
cellfinder-core 1.0.0
Automated 3D cell detection in large microscopy images32 versions - Latest release: 5 months ago - 4 dependent packages - 1 dependent repositories - 1.32 thousand downloads last month - 19 stars on GitHub - 1 maintainer
Top 9.1% on pypi.org
32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
picassosr 0.6.9
A collection of tools for painting super-resolution images32 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.21 thousand downloads last month - 97 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 7.37 thousand downloads last month - 311 stars on GitHub - 4 maintainers
cucim 23.10.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 7.37 thousand downloads last month - 311 stars on GitHub - 4 maintainers
Top 6.6% on pypi.org
30 versions - Latest release: 3 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
libertem 0.14.0
Open pixelated STEM framework30 versions - Latest release: 3 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
29 versions - Latest release: about 3 years ago - 15 dependent packages - 35 dependent repositories - 4.36 thousand downloads last month - 43 stars on GitHub - 2 maintainers
nd2reader 3.3.0
A tool for reading ND2 files produced by NIS Elements29 versions - Latest release: about 3 years ago - 15 dependent packages - 35 dependent repositories - 4.36 thousand downloads last month - 43 stars on GitHub - 2 maintainers
atomai 0.7.8
Deep and machine learning for atom-resolved data29 versions - Latest release: 8 months ago - 1 dependent repositories - 530 downloads last month - 164 stars on GitHub - 1 maintainer
qpsphere 0.5.9
library for analyzing spherical objects in phase imaging28 versions - Latest release: about 2 years ago - 2 dependent repositories - 310 downloads last month - 4 stars on GitHub - 2 maintainers
empiar-depositor 1.6b30
Script for depositing the data into EMPIAR using EMPIAR API27 versions - Latest release: 9 months ago - 2 dependent repositories - 126 downloads last month - 6 stars on GitHub - 2 maintainers
deepflash2 0.2.3
A Deep learning pipeline for segmentation of fluorescent labels in microscopy images27 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 258 downloads last month - 56 stars on GitHub - 1 maintainer
czitools 0.7.0
Tools to simplify reading CZI (Carl Zeiss Image) meta and pixel data26 versions - Latest release: 2 days ago - 293 downloads last month - 7 stars on GitHub - 1 maintainer
sxdm 1.0.0
Tools for analyzing Scanning X-ray Diffraction Microscopy data26 versions - Latest release: over 2 years ago - 1 dependent repositories - 73 downloads last month - 1 stars on GitHub - 1 maintainer
Top 6.3% on pypi.org
26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
pyxem 0.17.0
multi-dimensional diffraction microscopy26 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 1.73 thousand downloads last month - 141 stars on GitHub - 3 maintainers
Top 7.9% on pypi.org
25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
atomap 0.4.0
Library for analysing atomic resolution images25 versions - Latest release: 3 months ago - 2 dependent packages - 6 dependent repositories - 401 downloads last month - 14 stars on GitLab.com - 1 maintainer
ngff-zarr 0.8.1
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr impleme...24 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 1.62 thousand downloads last month - 18 stars on GitHub - 1 maintainer
cellseg_models_pytorch 0.1.24
Python library for 2D cell/nuclei instance segmentation models written with PyTorch.24 versions - Latest release: 7 months ago - 250 downloads last month - 60 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 213 downloads last month - 19 stars on GitHub - 2 maintainers
intern 1.4.1
Python SDK for interacting with neuroscience data via the Boss API.24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 213 downloads last month - 19 stars on GitHub - 2 maintainers
jicbioimage.core 0.15.0
Python package designed to make it easy to work with bio images.23 versions - Latest release: over 7 years ago - 7 dependent repositories - 59 downloads last month - 1 stars on GitHub - 1 maintainer
tiftool 0.2.4
tiftool22 versions - Latest release: almost 4 years ago - 1 dependent repositories - 74 downloads last month - 1 maintainer
tigerasi 0.0.26
a lightweight python driver for ASI brand Tiger Controllers21 versions - Latest release: 6 months ago - 93 downloads last month - 5 stars on GitHub - 1 maintainer
palom 2024.4.1
Piecewise alignment for layers of mosaics21 versions - Latest release: 20 days ago - 1 dependent package - 1 dependent repositories - 177 downloads last month - 16 stars on GitHub - 1 maintainer
fpd 0.2.5
FPD: Fast pixelated detector data storage, analysis and visualisation.20 versions - Latest release: about 2 years ago - 2 dependent repositories - 135 downloads last month - 9 stars on GitLab.com - 1 maintainer
Top 8.7% on pypi.org
20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
useq-schema 0.4.7
Schema for multi-dimensional microscopy experiments20 versions - Latest release: 8 months ago - 4 dependent packages - 3 dependent repositories - 6.91 thousand downloads last month - 14 stars on GitHub - 1 maintainer
pymmcore-widgets 0.7.1
A set of Qt-based widgets onto the pymmcore-plus model19 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 781 downloads last month - 8 stars on GitHub - 2 maintainers
nrefocus 0.5.3
numerical focusing (refocusing, autofocusing) of complex wave fields19 versions - Latest release: over 1 year ago - 2 dependent packages - 5 dependent repositories - 346 downloads last month - 7 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
ncempy 1.11.1
openNCEM's Python Package19 versions - Latest release: 3 months ago - 9 dependent packages - 26 dependent repositories - 2.9 thousand downloads last month - 54 stars on GitHub - 2 maintainers
napari-aicsimageio 0.7.2
AICSImageIO bindings for napari19 versions - Latest release: over 1 year ago - 7 dependent packages - 1 dependent repositories - 497 downloads last month - 33 stars on GitHub - 1 maintainer
impose 0.4.8
Fit and superimpose shapes from different imaging modalities18 versions - Latest release: 2 days ago - 3 dependent repositories - 237 downloads last month - 1 stars on GitHub - 2 maintainers
Top 8.0% on pypi.org
18 versions - Latest release: over 7 years ago - 1 dependent package - 6 dependent repositories - 354 downloads last month - 3 maintainers
sima 1.3.2
Software for analysis of sequential imaging data18 versions - Latest release: over 7 years ago - 1 dependent package - 6 dependent repositories - 354 downloads last month - 3 maintainers
Top 9.6% on pypi.org
18 versions - Latest release: 11 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
hyperspy-gui-traitsui 2.0.1
traitsui GUI elements for the HyperSpy framework.18 versions - Latest release: 11 days ago - 5 dependent packages - 2 dependent repositories - 4.12 thousand downloads last month - 9 stars on GitHub - 2 maintainers
boss-ingest 0.12.0
Ingest client for the Boss17 versions - Latest release: about 3 years ago - 1 dependent repositories - 130 downloads last month - 5 stars on GitHub - 2 maintainers
napari-psf-analysis 1.1.3
A plugin to analyse point spread functions (PSFs).16 versions - Latest release: 20 days ago - 1 dependent repositories - 147 downloads last month - 7 stars on GitHub - 1 maintainer
pathml 2.1.1
Tools for computational pathology15 versions - Latest release: 12 months ago - 1 dependent repositories - 305 downloads last month - 364 stars on GitHub - 2 maintainers
multi-locus-analysis 0.1.0
Utilities for analyzing particle trajectories15 versions - Latest release: about 3 years ago - 1 dependent repositories - 49 downloads last month - 0 stars on GitHub - 1 maintainer
gpim 0.3.9
Gaussian processes for image analysis14 versions - Latest release: about 3 years ago - 1 dependent repositories - 103 downloads last month - 54 stars on GitHub - 1 maintainer
bioimage 0.1.3
bioimage - library to make working with biomedical images more comfortable14 versions - Latest release: over 2 years ago - 1 dependent repositories - 85 downloads last month - 1 maintainer
axondeepseg 3.2.0
Python tool for automatic axon and myelin segmentation14 versions - Latest release: over 3 years ago - 75 downloads last month - 112 stars on GitHub - 3 maintainers
hyperspyui 1.3.1
Hyperspy Graphical User Interface14 versions - Latest release: about 1 year ago - 1 dependent repositories - 230 downloads last month - 25 stars on GitHub - 2 maintainers
ssm-analyze 0.2.6
Analysis GUI for scanning SQUID microscopy13 versions - Latest release: about 3 years ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 1 maintainer
symbac 0.4.0
A package for generating synthetic images of bactera in phase contrast or fluorescence. Used for ...13 versions - Latest release: 2 months ago - 1 dependent repositories - 68 downloads last month - 17 stars on GitHub - 1 maintainer
napari-lattice 0.2.7
Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.13 versions - Latest release: about 1 year ago - 127 downloads last month - 11 stars on GitHub - 1 maintainer
access2thematrix 0.4.4
Scienta Omicron (NanoScience) (NanoTechnology) MATRIX Control System result file accessing tool12 versions - Latest release: about 1 year ago - 1 dependent package - 133 downloads last month - 1 maintainer
brainreg-napari 0.1.4
Multi-atlas whole-brain microscopy registration12 versions - Latest release: 4 months ago - 2 dependent packages - 140 downloads last month - 13 stars on GitHub - 1 maintainer
pyapr 1.0.7
Content-adaptive image processing using the Adaptive Particle Representation11 versions - Latest release: 6 months ago - 2 dependent packages - 1 dependent repositories - 737 downloads last month - 14 stars on GitHub - 1 maintainer
cytominer-database 0.3.4
A package for storing morphological profiling data.11 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 611 downloads last month - 9 stars on GitHub - 5 maintainers
ffta 0.3.4
Fast Free Transient Analysis11 versions - Latest release: almost 3 years ago - 1 dependent repositories - 90 downloads last month - 3 stars on GitHub - 1 maintainer
xanespy 0.3.3
Tools for analyzing X-ray absorbance spectroscopy data11 versions - Latest release: almost 5 years ago - 1 dependent repositories - 124 downloads last month - 3 stars on GitHub - 1 maintainer
ndexchange 1.0.10
Python 3 program to download data from NeuroData11 versions - Latest release: about 5 years ago - 1 dependent repositories - 11 downloads last month - 4 stars on GitHub - 2 maintainers
jicbioimage.transform 0.6.0
Python package wrapping commonly used image transformations.10 versions - Latest release: over 7 years ago - 4 dependent repositories - 25 downloads last month - 1 stars on GitHub - 1 maintainer
nanomesh 0.9.1
Creates 3d meshes from microscopy experimental data10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 361 downloads last month - 26 stars on GitHub - 1 maintainer
pyhmsa 0.2.0
Python implementation of the MSA / MAS / AMAS Hyper-Dimensional Data File specification10 versions - Latest release: about 5 years ago - 2 dependent repositories - 102 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
10 versions - Latest release: 11 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
hyperspy-gui-ipywidgets 2.0.1
ipywidgets GUI elements for the HyperSpy framework.10 versions - Latest release: 11 days ago - 5 dependent packages - 3 dependent repositories - 5.68 thousand downloads last month - 11 stars on GitHub - 2 maintainers
jicbioimage.illustrate 0.6.1
Python package providing a set of tools for creating annotated images and illustrations.10 versions - Latest release: over 7 years ago - 3 dependent repositories - 38 downloads last month - 0 stars on GitHub - 1 maintainer
pco 2.1.2
This class provides methods for using pco cameras.10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 499 downloads last month - 1 maintainer
Top 5.6% on pypi.org
10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.26 thousand downloads last month - 111 stars on GitHub - 4 maintainers
bg-atlasapi 1.0.3
A lightweight python module to interact with atlases for systems neuroscience10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.26 thousand downloads last month - 111 stars on GitHub - 4 maintainers
napari-czann-segment 0.0.18
Semantic Segmentation using Deep Learning ONNX models packaged as *.czann files9 versions - Latest release: 8 months ago - 115 downloads last month - 7 stars on GitHub - 1 maintainer
niddl 0.1.8
Neuro Imaging Denoising via Deep Learning (NIDDL)9 versions - Latest release: 11 months ago - 83 downloads last month - 8 stars on GitHub - 1 maintainer
cellocity 1.0.0
Velocity and vector analysis of microscopy data9 versions - Latest release: over 3 years ago - 1 dependent repositories - 54 downloads last month - 6 stars on GitHub - 1 maintainer
nis2pyr 0.6.2
Utility for converting Nikon ND2 files to tiled pyramidal OME TIFF files.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 100 downloads last month - 7 stars on GitHub - 1 maintainer
temul-toolkit 0.1.7
Functions for analysis of high resolution electron microscopy and spectroscopy data.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 49 downloads last month - 1 maintainer
nellie 0.1.8
Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cel...8 versions - Latest release: 23 days ago - 339 downloads last month - 26 stars on GitHub - 1 maintainer
pyminflux 0.4.1
Reader, processor, and viewer of MINFLUX raw data.8 versions - Latest release: 9 days ago - 121 downloads last month - 7 stars on GitHub - 1 maintainer
zetastitcher 0.7.0
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light...7 versions - Latest release: almost 2 years ago - 2 dependent repositories - 106 downloads last month - 36 stars on GitHub - 1 maintainer
microjson 0.1.11
MicroJSON is a library for validating, parsing, and manipulating MicroJSON data.7 versions - Latest release: 20 days ago - 41 downloads last month - 2 maintainers
ddmtools 0.3.0
A Python library for doing differential dynamic microscopy on polydisperse samples7 versions - Latest release: about 2 years ago - 1 dependent repositories - 73 downloads last month - 1 stars on GitHub - 1 maintainer
napari-micromanager 0.1.0
Micro-Manager GUI interface in napari.7 versions - Latest release: 2 months ago - 1 dependent repositories - 93 downloads last month - 57 stars on GitHub - 1 maintainer
imagej-rolling-ball 2023.8.6
Python wrapper for ImageJ's rolling ball background subtraction using pyimagej7 versions - Latest release: 9 months ago - 40 downloads last month - 0 stars on GitHub - 1 maintainer
brainglobe-atlasapi 2.0.6
A lightweight python module to interact with and generate atlases for systems neuroscience.7 versions - Latest release: 4 days ago - 8 dependent packages - 5.14 thousand downloads last month - 112 stars on GitHub - 3 maintainers
basicpy 1.1.0
A python package for background and shading correction of optical microscopy images7 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 483 downloads last month - 53 stars on GitHub - 3 maintainers
pyspacell 0.1.5
A Python package for single cell spatial image analysis6 versions - Latest release: over 4 years ago - 1 dependent repositories - 19 downloads last month - 18 stars on GitHub - 1 maintainer
jicimagelib 0.3.4
Python package designed to make it easy to work with microscopy images.6 versions - Latest release: over 8 years ago - 2 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
tunacell 0.2.2
Analysis of Timeseries from dividing UNicellular microorganisms6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 36 downloads last month - 1 stars on GitHub - 1 maintainer
napari-apr-viewer 1.0.1
A simple plugin to view APR images in napari6 versions - Latest release: 6 months ago - 1 dependent repositories - 59 downloads last month - 5 stars on GitHub - 1 maintainer
pixstem 0.4.0
Library for processing scanning transmission electron microscopy data acquired using a pixelated ...6 versions - Latest release: about 4 years ago - 1 dependent repositories - 36 downloads last month - 1 maintainer
actk 0.2.2
Automated Cell Toolkit6 versions - Latest release: over 3 years ago - 75 downloads last month - 23 stars on GitHub - 1 maintainer
pydhm 1.0.5
An open-source Python library to numerically recover the complex wavefield information of samples...6 versions - Latest release: over 1 year ago - 1 dependent repositories - 63 downloads last month - 15 stars on GitHub - 1 maintainer
Related Keywords
python
54
image-processing
24
image-analysis
16
scientific-formats
16
dask
16
segmentation
15
scientific-computing
15
image-metadata
15
xarray
14
data analysis
14
neuroscience
13
imaging
13
bioio
13
electron-microscopy
12
STEM
11
brain
10
electron microscopy
10
registration
9
fluorescence
9
deep-learning
9
electron
9
image
9
hyperspy
9
biology
9
numpy
8
spectroscopy
8
analysis
8
image analysis
8
napari
7
microanalysis
7
TEM
7
materials-science
7
multi-dimensional
7
holography
6
x-ray-spectroscopy
6
scanning
6
connectomics
6
microscopy-images
6
microscope
6
EM
5
spatial
5
database
5
hyperspectral
5
pytorch
5
data-analysis
5
atlases
5
digital holographic microscopy
5
quantitative phase imaging
5
hyperspy-extension
5
digital-pathology
5
quantitative-phase-imaging
5
machine-learning
5
diffraction
4
physical-sciences
4
data-visualization
4
scipy
4
scientific
4
x-ray
4
tiff
4
connectome
4
file
4
hmsa
4
format
4
medical-imaging
4
cell
4
cuda
4
fluorescence-microscopy-imaging
4
SPM
4
cells
4
gui
4
visualisation
4
gpu
4
electron energy loss spectroscopy
4
calcium
4
optics
3
visualization
3
statistics
3
refractive index
3
reconstruction
3
nd2
3
eels
3
nikon
3
hdf5
3
nis-elements
3
bioimage-analysis
3
3d
3
metadata
3
micro-manager
3
scattering
3
psf
3
napari-plugin
3
protein
3
nvidia
3
monte-carlo-simulation
3
computer-vision
3
deep learning
3
multidimensional-image-processing
3
image-data
3
stitching
3
EELS
3