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pypi.org "multi-omics" keyword

View the packages on the pypi.org package registry that are tagged with the "multi-omics" keyword.

Top 4.7% on pypi.org
mudata 0.3.2
Multimodal data
14 versions - Latest release: 3 months ago - 24 dependent packages - 12 dependent repositories - 87.6 thousand downloads last month - 99 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
muon 0.1.7
Multimodal omics analysis framework
10 versions - Latest release: 10 months ago - 15 dependent packages - 6 dependent repositories - 9.71 thousand downloads last month - 245 stars on GitHub - 1 maintainer
muvi 0.1.5
MuVI: A multi-view latent variable model with domain-informed structured sparsity for integrating...
5 versions - Latest release: 10 months ago - 48 downloads last month - 31 stars on GitHub - 1 maintainer
momics 0.4.0
A package to create and manage genome-related TileDB arrays
4 versions - Latest release: 11 months ago - 18 downloads last month - 0 stars on GitHub - 1 maintainer
mofaflex 0.1.0rc2
Factor Analysis Models
2 versions - Latest release: about 2 months ago - 31 downloads last month - 16 stars on GitHub - 1 maintainer
modos 0.3.3
SMOC Multi-Omics Digital Object System API
9 versions - Latest release: 12 days ago - 141 downloads last month - 2 stars on GitHub - 2 maintainers
mowgli 0.4.0
Mowgli is a novel method for the integration of paired multi-omics data with any type and number ...
5 versions - Latest release: about 1 year ago - 2 dependent repositories - 76 downloads last month - 4 stars on GitHub - 1 maintainer
openomics 0.9.2
OpenOmics provides a bioinformatics API and web-app platform integrate and visualize the multiomi...
12 versions - Latest release: almost 2 years ago - 1 dependent repositories - 77 downloads last month - 33 stars on GitHub - 1 maintainer
mogonet 2.0.1
Package for MOGONET method @nature communications
12 versions - Latest release: 2 months ago - 61 downloads last month - 2 stars on GitHub - 1 maintainer
maui-tools 0.1.95
Multi-omics Autoencoder Integration
17 versions - Latest release: over 4 years ago - 1 dependent repositories - 58 downloads last month - 49 stars on GitHub - 1 maintainer
pymultiomics 1.0.4
A Python package for multi-omics data integration and analysis
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 41 downloads last month - 24 stars on GitHub - 1 maintainer
move-dl 1.5.0
Multi-omics variational autoencoder
22 versions - Latest release: about 1 year ago - 1 dependent repositories - 39 downloads last month - 81 stars on GitHub - 2 maintainers
ymp 0.3.1
Flexible multi-omic pipeline system
8 versions - Latest release: about 1 year ago - 1 dependent repositories - 87 downloads last month - 18 stars on GitHub - 1 maintainer
scotch-sc 1.0.0
SCOTCH: Single-Cell multi-modal integration using Optimal Transport and Cell matCHing
1 version - Latest release: over 1 year ago - 6 downloads last month - 6 stars on GitHub - 1 maintainer
magine 0.1.5
Package to analyze biological data.
20 versions - Latest release: over 4 years ago - 2 dependent repositories - 60 downloads last month - 9 stars on GitHub - 1 maintainer
mudatasets 0.0.2
Multimodal Datasets in MuData format
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 58 downloads last month - 3 stars on GitHub - 1 maintainer
modas 2.2.1
MODAS: Multi-omics data association study
21 versions - Latest release: about 1 year ago - 101 downloads last month - 16 stars on GitHub - 1 maintainer
graphvelo 0.1.11
Inferring manifold-constrained velocity and transforming vectors across representations
12 versions - Latest release: 5 months ago - 96 downloads last month - 6 stars on GitHub - 1 maintainer
jcast 0.3.5
JCAST uses splice junction information from RNA-seq data to create custom protein databases
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 38 downloads last month - 19 stars on GitHub - 1 maintainer
monti 1.2.2
A multi-omics integrative analysis tool
2 versions - Latest release: about 4 years ago - 1 dependent repositories - 15 downloads last month - 5 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
mofapy2 0.7.2
Multi-omics factor analysis
23 versions - Latest release: 11 months ago - 2 dependent packages - 6 dependent repositories - 2.5 thousand downloads last month - 341 stars on GitHub - 2 maintainers
neticspy 0.1.5
Python implementation of NetICS. (Network-based Integration of Multi-omics data).
11 versions - Latest release: about 4 years ago - 1 dependent repositories - 19 downloads last month - 1 stars on GitHub - 2 maintainers
gnnsubnet 0.2.1
Disease Subnetwork Detection with Explainable Graph Neural Networks
15 versions - Latest release: over 2 years ago - 1 dependent repositories - 679 downloads last month - 20 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics 6 genomics 4 single-cell 4 python 3 muon 3 anndata 3 mudata 3 multimodal-omics-analysis 3 mofa 2 factor-analysis 2 machine-learning 2 deep-learning 2 scverse 2 metabolomics 2 proteomics 2 rnaseq 2 scrna-seq 2 integration 2 scanpy 2 data-integration 2 ymp 1 generegulation 1 rna-seq 1 omics-pipeline 1 hacktoberfest2022 1 hacktoberfest-accepted 1 hacktoberfest 1 extensible 1 conda-environment 1 snakemake 1 bioconda 1 conda 1 matrix-factorization 1 metagenomics 1 automation 1 workflow 1 pipeline 1 variational-inference 1 explainable-ai 1 disease-networks 1 graph-neural-networks 1 multi-omic-integration 1 bioinformatics-tool 1 bioinformatics-analysis 1 integrative-analysis 1 mass-spectrometry 1 isoform 1 scientific 1 single-cell-dynamics 1 host-virus 1 dynamic-system-modeling 1 contrastive PCA 1 Mendelian randomization 1 GWAS 1 multiome 1 multimodal-omics 1 visualization 1 network analysis 1 enrichment analysis 1 biological pathways 1 biological networks 1 spatialomics 1 multimodal 1 dictionary-learning 1 rest-api 1 omics 1 metadata 1 fair 1 cli 1 muvi 1 sparse 1 matrix 1 format 1 epigenomics 1 Tile-DB 1 variational inference 1 structured sparsity 1 latent variable model 1 feature sets 1 multi-view 1 scatac-seq 1 multimodal-data 1 cite-seq 1 data-analysis 1 variational-autoencoder 1 variational 1 multi-modal 1 bayesian-inference 1 associations-inference 1 transcriptomics 1 latent-factor-model 1 cancer-genomics 1 autoencoder 1 shell-script 1 shell 1 r 1 nextflow-pipeline 1 nextflow 1 multiomics-data 1 multiomics 1