anndata 10 single-cell 9 bioinformatics 7 python 7 scrna-seq 5 transcriptomics 5 scverse 5 data-science 4 seurat 3 machine-learning 3 RNA-seq 3 sc 2 seq 2 cell 2 single 2 extras 2 extra 2 spatial 2 muon 2 multi-omics 2 mudata 2 squidpy 2 gene-expression 2 visualize-data 2 analysis 1 scRNA-seq 1 quality 1 multiqc 1 control 1 louvain 1 leiden 1 clustree 1 clustering 1 webgl 1 visualization 1 cell-type-annotation 1 smartseq2 1 data-visualization 1 10x 1 species 1 mouse 1 multimodal-omics 1 octopy 1 MERSCOPE 1 MERFISH 1 variational-autoencoder 1 scvi-tools 1 pre-clinical 1 kernel-machine-learning 1 drug-response 1 deep-learning 1 clinical 1 cell-lines 1 cancer-genomics 1 python-module 1 hacktoberfest 1 fastgenomics-module 1 fastgenomics 1 data IO 1 hdf5 1 orthologs 1 phylostratigraphy 1 tensorflow 1 evolution 1 gnn 1 glm 1 encoder-decoder-model 1 cvae 1 cell-cell-interaction 1 cell-cell-communication 1 lineage-tracing 1 transcriptome 1 tai 1 scrna-seq-analysis 1 orthofinder 1 gene-expression-profiles 1 expression-profiles 1 human 1 scatac-seq 1 multimodal-omics-analysis 1 multimodal-data 1 cite-seq 1 xsc 1 pseudobulk 1 differential-expression 1 consensus-algorithm 1 large-language-models 1 llm 1 bioconductor 1 jupyter 1 rpy2 1 akey 1 orthomap 1 gene age 1 multiome 1