single-cell 12 anndata 12 bioinformatics 10 python 8 transcriptomics 6 scverse 6 data-science 5 scrna-seq 5 machine-learning 4 RNA-seq 4 seurat 3 visualize-data 3 single 2 gene-expression 2 mudata 2 multi-omics 2 extras 2 extra 2 cell 2 sc 2 muon 2 seq 2 spatial 2 squidpy 2 scRNA-seq 2 visualization 2 leiden 2 clustering 2 annotation 2 xsc 1 multimodal-omics 1 multiome 1 cancer-genomics 1 analysis 1 akey 1 louvain 1 clustree 1 quality 1 multiqc 1 control 1 rpy2 1 jupyter 1 bioconductor 1 marker-genes 1 octopy 1 MERSCOPE 1 MERFISH 1 tensorflow 1 gnn 1 glm 1 encoder-decoder-model 1 cvae 1 cell-cell-interaction 1 cell-cell-communication 1 lineage-tracing 1 data IO 1 hdf5 1 species 1 mouse 1 human 1 variational-autoencoder 1 scvi-tools 1 pre-clinical 1 kernel-machine-learning 1 drug-response 1 deep-learning 1 clinical 1 cell-lines 1 fastgenomics-module 1 fastgenomics 1 scatac-seq 1 multimodal-omics-analysis 1 multimodal-data 1 cite-seq 1 scrnaseq-analysis 1 scrna 1 qwen 1 openrouter 1 openai 1 multi-llm-consensus 1 llm 1 large-language-models 1 grok 1 gemini 1 deepseek 1 consensus-algorithm 1 computational-biology 1 claude 1 cell-type-annotation 1 artificial-intelligence 1 resolution 1 llm-agent 1 celltype-identification 1 celltype-annotation 1 cell types 1 webgl 1 smartseq2 1 data-visualization 1 10x 1 transcriptome 1