Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "scanpy" keyword
Top 1.7% on pypi.org
83 versions - Latest release: about 2 months ago - 389 dependent packages - 467 dependent repositories - 196 thousand downloads last month - 501 stars on GitHub - 3 maintainers
anndata 0.10.7
Annotated data.83 versions - Latest release: about 2 months ago - 389 dependent packages - 467 dependent repositories - 196 thousand downloads last month - 501 stars on GitHub - 3 maintainers
cirrocumulus 1.1.57
Bring your single-cell data to life143 versions - Latest release: 8 months ago - 1 dependent repositories - 887 downloads last month - 64 stars on GitHub - 3 maintainers
Top 4.7% on pypi.org
9 versions - Latest release: about 2 months ago - 15 dependent packages - 6 dependent repositories - 7.57 thousand downloads last month - 198 stars on GitHub - 1 maintainer
muon 0.1.6
Multimodal omics analysis framework9 versions - Latest release: about 2 months ago - 15 dependent packages - 6 dependent repositories - 7.57 thousand downloads last month - 198 stars on GitHub - 1 maintainer
treedata 0.0.1
anndata with trees1 version - Latest release: 11 days ago - 274 downloads last month - 1 stars on GitHub - 1 maintainer
Top 1.2% on pypi.org
78 versions - Latest release: about 2 months ago - 416 dependent packages - 493 dependent repositories - 147 thousand downloads last month - 1,777 stars on GitHub - 3 maintainers
scanpy 1.10.1
Single-Cell Analysis in Python.78 versions - Latest release: about 2 months ago - 416 dependent packages - 493 dependent repositories - 147 thousand downloads last month - 1,777 stars on GitHub - 3 maintainers
checkatlas 0.4.17
One liner tool to check the quality of your single-cell atlases.68 versions - Latest release: about 1 month ago - 320 downloads last month - 3 stars on GitHub - 1 maintainer
mudatasets 0.0.2
Multimodal Datasets in MuData format2 versions - Latest release: over 1 year ago - 1 dependent repositories - 74 downloads last month - 3 stars on GitHub - 1 maintainer
fgread 0.7.7
Module for reading datasets shared on FASTGenomics39 versions - Latest release: almost 3 years ago - 1 dependent repositories - 303 downloads last month - 1 stars on GitHub - 3 maintainers
Top 4.6% on pypi.org
12 versions - Latest release: about 4 years ago - 5 dependent packages - 12 dependent repositories - 672 downloads last month - 1,728 stars on GitHub - 2 maintainers
diffxpy 0.7.4
Fast and scalable differential expression analysis on single-cell RNA-seq data12 versions - Latest release: about 4 years ago - 5 dependent packages - 12 dependent repositories - 672 downloads last month - 1,728 stars on GitHub - 2 maintainers
Top 4.9% on pypi.org
11 versions - Latest release: 9 months ago - 6 dependent packages - 12 dependent repositories - 2.52 thousand downloads last month - 114 stars on GitHub - 1 maintainer
anndata2ri 1.3.1
Convert between AnnData and SingleCellExperiment11 versions - Latest release: 9 months ago - 6 dependent packages - 12 dependent repositories - 2.52 thousand downloads last month - 114 stars on GitHub - 1 maintainer
adpbulk 0.1.4
Pseudo-Bulking Single-Cell RNA-seq5 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 161 downloads last month - 19 stars on GitHub - 1 maintainer
sobolev-alignment 1.0.0
Sobolev alignment of deep probabilistic models for comparing single cell profiles1 version - Latest release: about 1 year ago - 23 downloads last month - 5 stars on GitHub - 1 maintainer
orthomap 0.0.1
extract orthomap from OrthoFinder output for query species1 version - Latest release: about 1 year ago - 14 downloads last month - 6 stars on GitHub - 1 maintainer
diopy 0.5.5
The single cell data IO between R and Python(Python version)9 versions - Latest release: over 2 years ago - 1 dependent repositories - 173 downloads last month - 1 maintainer
akey 0.0.5
akey5 versions - Latest release: about 2 months ago - 1 dependent package - 194 downloads last month - 1 maintainer
mousipy 0.1.5
Python package for translating between single-cell count data with mouse and human genes using or...10 versions - Latest release: 4 months ago - 1 dependent repositories - 133 downloads last month - 12 stars on GitHub - 1 maintainer
ncem 0.1.5
ncem. Learning cell communication from spatial graphs of cells.6 versions - Latest release: 11 months ago - 1 dependent repositories - 97 downloads last month - 96 stars on GitHub - 1 maintainer
octopy-st 0.0.1a0 removed
Tool for analyzing cell closeness in spatial transcriptomic data3 versions - Latest release: over 1 year ago
Related Keywords
anndata
10
python
7
single-cell
7
bioinformatics
6
scverse
5
transcriptomics
5
scrna-seq
5
data-science
4
RNA-seq
3
machine-learning
3
seq
2
gene-expression
2
squidpy
2
sc
2
cell
2
single
2
extras
2
extra
2
visualize-data
2
muon
2
mudata
2
multi-omics
2
spatial
2
seurat
2
analysis
1
scRNA-seq
1
transcriptome
1
tai
1
scrna-seq-analysis
1
orthofinder
1
gene-expression-profiles
1
expression-profiles
1
evolution
1
phylostratigraphy
1
orthologs
1
gene age
1
orthomap
1
variational-autoencoder
1
multimodal-omics-analysis
1
octopy
1
MERSCOPE
1
MERFISH
1
tensorflow
1
10x
1
gnn
1
glm
1
encoder-decoder-model
1
cvae
1
cell-cell-interaction
1
cell-cell-communication
1
species
1
mouse
1
human
1
akey
1
data IO
1
hdf5
1
scatac-seq
1
lineage-tracing
1
multimodal-data
1
control
1
multiqc
1
quality
1
multimodal-omics
1
multiome
1
fastgenomics
1
fastgenomics-module
1
hacktoberfest
1
python-module
1
bioconductor
1
jupyter
1
rpy2
1
differential-expression
1
pseudobulk
1
xsc
1
cite-seq
1
webgl
1
visualization
1
smartseq2
1
cancer-genomics
1
cell-lines
1
clinical
1
deep-learning
1
drug-response
1
data-visualization
1
kernel-machine-learning
1
pre-clinical
1
scvi-tools
1