pypi.org "scanpy" keyword
View the packages on the pypi.org package registry that are tagged with the "scanpy" keyword.
Top 1.2% on pypi.org
88 versions - Latest release: 2 months ago - 416 dependent packages - 493 dependent repositories - 839 thousand downloads last month - 1,778 stars on GitHub - 3 maintainers
scanpy 1.11.4
Single-Cell Analysis in Python.88 versions - Latest release: 2 months ago - 416 dependent packages - 493 dependent repositories - 839 thousand downloads last month - 1,778 stars on GitHub - 3 maintainers
Top 1.7% on pypi.org
100 versions - Latest release: about 2 months ago - 389 dependent packages - 467 dependent repositories - 963 thousand downloads last month - 657 stars on GitHub - 2 maintainers
anndata 0.12.2
Annotated data.100 versions - Latest release: about 2 months ago - 389 dependent packages - 467 dependent repositories - 963 thousand downloads last month - 657 stars on GitHub - 2 maintainers
Top 4.9% on pypi.org
13 versions - Latest release: about 1 year ago - 6 dependent packages - 12 dependent repositories - 209 thousand downloads last month - 124 stars on GitHub - 1 maintainer
anndata2ri 1.3.2
Convert between AnnData and SingleCellExperiment13 versions - Latest release: about 1 year ago - 6 dependent packages - 12 dependent repositories - 209 thousand downloads last month - 124 stars on GitHub - 1 maintainer
cirrocumulus 1.1.61
Bring your single-cell data to life148 versions - Latest release: 8 days ago - 1 dependent repositories - 1.38 thousand downloads last month - 88 stars on GitHub - 3 maintainers
Top 4.6% on pypi.org
12 versions - Latest release: over 5 years ago - 5 dependent packages - 12 dependent repositories - 2.8 thousand downloads last month - 2,062 stars on GitHub - 3 maintainers
diffxpy 0.7.4
Fast and scalable differential expression analysis on single-cell RNA-seq data12 versions - Latest release: over 5 years ago - 5 dependent packages - 12 dependent repositories - 2.8 thousand downloads last month - 2,062 stars on GitHub - 3 maintainers
sc-average-overlap 1.0.6
A tool for comparing populations in single-cell RNA-seq data with average overlap of marker gene ...5 versions - Latest release: 5 months ago - 22 downloads last month - 2,082 stars on GitHub - 1 maintainer
diopy 0.5.5
The single cell data IO between R and Python(Python version)9 versions - Latest release: almost 4 years ago - 1 dependent repositories - 103 downloads last month - 1 maintainer
treedata 0.2.2
anndata with trees11 versions - Latest release: 14 days ago - 873 downloads last month - 5 stars on GitHub - 1 maintainer
mudatasets 0.0.2
Multimodal Datasets in MuData format2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 56 downloads last month - 3 stars on GitHub - 1 maintainer
cytetype 0.10.0
Python client for characterization of clusters from single-cell RNA-seq data.27 versions - Latest release: 15 days ago - 651 downloads last month - 43 stars on GitHub - 1 maintainer
fgread 0.7.7
Module for reading datasets shared on FASTGenomics39 versions - Latest release: about 4 years ago - 1 dependent repositories - 158 downloads last month - 1 stars on GitHub - 3 maintainers
akey 0.0.5
akey5 versions - Latest release: over 1 year ago - 1 dependent package - 68 downloads last month - 1 maintainer
adpbulk 0.1.4
Pseudo-Bulking Single-Cell RNA-seq5 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 68.4 thousand downloads last month - 21 stars on GitHub - 1 maintainer
treetag 0.1.1
Hierarchical cell-type tagging with YAML ontologies and markers.2 versions - Latest release: 26 days ago - 111 downloads last month - 2 stars on GitHub - 1 maintainer
checkatlas 0.6.0
One liner tool to check the quality of your single-cell atlases.70 versions - Latest release: 2 months ago - 147 downloads last month - 3 stars on GitHub - 1 maintainer
decontx-python 0.2.0
Python implementation of DecontX for removing ambient RNA contamination from single-cell RNA-seq ...1 version - Latest release: 25 days ago - 0 stars on GitHub - 1 maintainer
resolutiontree 0.1.1
Systematic exploration of clustering resolutions in single-cell analysis3 versions - Latest release: 4 months ago - 10 downloads last month - 1 stars on GitHub - 1 maintainer
pycea-lineage 0.1.0
Scverse lineage tracing toolkit2 versions - Latest release: 14 days ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
ncem 0.1.5
ncem. Learning cell communication from spatial graphs of cells.6 versions - Latest release: over 2 years ago - 1 dependent repositories - 31 downloads last month - 112 stars on GitHub - 1 maintainer
opticlust 0.4.2
Single cell clustering and recommendations at a glance5 versions - Latest release: 6 months ago - 12 downloads last month - 1 stars on GitHub - 3 maintainers
mousipy 0.1.7
Python package for translating between single-cell count data with mouse and human genes using or...12 versions - Latest release: 4 months ago - 1 dependent repositories - 159 downloads last month - 27 stars on GitHub - 1 maintainer
mllmcelltype 1.3.4 💰
A Python module for cell type annotation using various LLMs.10 versions - Latest release: about 1 month ago - 380 downloads last month - 548 stars on GitHub - 1 maintainer
spatialperturb 0.1.0
Spatial transcriptomics × Perturb-seq toolkit: signatures, label transfer, spatial scoring, and g...1 version - Latest release: 10 days ago
xsc 0.0.12
xsc12 versions - Latest release: over 1 year ago - 26 downloads last month - 1 maintainer
sobolev-alignment 1.0.0
Sobolev alignment of deep probabilistic models for comparing single cell profiles1 version - Latest release: over 2 years ago - 6 downloads last month - 6 stars on GitHub - 1 maintainer
orthomap 0.0.1
extract orthomap from OrthoFinder output for query species1 version - Latest release: over 2 years ago - 13 downloads last month - 6 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
10 versions - Latest release: 11 months ago - 15 dependent packages - 6 dependent repositories - 9.71 thousand downloads last month - 245 stars on GitHub - 1 maintainer
muon 0.1.7
Multimodal omics analysis framework10 versions - Latest release: 11 months ago - 15 dependent packages - 6 dependent repositories - 9.71 thousand downloads last month - 245 stars on GitHub - 1 maintainer
octopy-st 0.0.1a0 removed
Tool for analyzing cell closeness in spatial transcriptomic data3 versions - Latest release: about 3 years ago
Related Keywords
single-cell
13
bioinformatics
12
anndata
12
python
8
scverse
7
transcriptomics
6
data-science
5
RNA-seq
5
scrna-seq
5
machine-learning
4
visualize-data
3
seurat
3
muon
2
squidpy
2
extras
2
multi-omics
2
mudata
2
lineage-tracing
2
annotation
2
gnn
2
extra
2
clustering
2
leiden
2
single
2
cell
2
scRNA-seq
2
sc
2
visualization
2
spatial
2
seq
2
gene-expression
2
cancer-genomics
1
cell-lines
1
clinical
1
xsc
1
analysis
1
xenium
1
perturb-seq
1
spatial transcriptomics
1
scrnaseq-analysis
1
scrna
1
qwen
1
openrouter
1
openai
1
multi-llm-consensus
1
llm
1
large-language-models
1
grok
1
gemini
1
deepseek
1
consensus-algorithm
1
pseudobulk
1
octopy
1
MERSCOPE
1
MERFISH
1
scatac-seq
1
multimodal-omics-analysis
1
multimodal-data
1
cite-seq
1
transcriptome
1
tai
1
scrna-seq-analysis
1
orthofinder
1
gene-expression-profiles
1
expression-profiles
1
evolution
1
phylostratigraphy
1
orthologs
1
gene age
1
orthomap
1
variational-autoencoder
1
scvi-tools
1
pre-clinical
1
kernel-machine-learning
1
drug-response
1
deep-learning
1
differential-expression
1
akey
1
python-module
1
hacktoberfest
1
fastgenomics-module
1
fastgenomics
1
marker-genes
1
llm-agent
1
celltype-identification
1
celltype-annotation
1
cell types
1
multiome
1
multimodal-omics
1
data IO
1
hdf5
1
webgl
1
smartseq2
1
data-visualization
1
10x
1
rpy2
1
jupyter
1
bioconductor
1
computational-biology
1
claude
1