Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "anndata" keyword
Top 4.6% on pypi.org
12 versions - Latest release: about 4 years ago - 5 dependent packages - 12 dependent repositories - 1.35 thousand downloads last month - 1,778 stars on GitHub - 2 maintainers
diffxpy 0.7.4
Fast and scalable differential expression analysis on single-cell RNA-seq data12 versions - Latest release: about 4 years ago - 5 dependent packages - 12 dependent repositories - 1.35 thousand downloads last month - 1,778 stars on GitHub - 2 maintainers
treedata 0.0.1
anndata with trees1 version - Latest release: 22 days ago - 309 downloads last month - 1 stars on GitHub - 1 maintainer
cell-ann 0.0.1
cell-ann: Cell approximate nearest neighbors4 versions - Latest release: 7 months ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
torch-adata 0.0.24
torch-adata24 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 121 downloads last month - 21 stars on GitHub - 1 maintainer
pytximport
A python implementation of tximport to transform transcript into gene counts4 versions - 854 downloads last month - 1 stars on GitHub - 1 maintainer
geome 0.0.2
Geometric Learning for Genome Data2 versions - Latest release: 11 months ago - 2 dependent repositories - 22 downloads last month - 16 stars on GitHub - 3 maintainers
cellplots 0.0.0
Cell & Genomics Plotting2 versions - Latest release: 9 months ago - 1 dependent package - 18 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.7% on pypi.org
83 versions - Latest release: about 2 months ago - 389 dependent packages - 467 dependent repositories - 189 thousand downloads last month - 501 stars on GitHub - 3 maintainers
anndata 0.10.7
Annotated data.83 versions - Latest release: about 2 months ago - 389 dependent packages - 467 dependent repositories - 189 thousand downloads last month - 501 stars on GitHub - 3 maintainers
Top 1.2% on pypi.org
78 versions - Latest release: about 2 months ago - 416 dependent packages - 493 dependent repositories - 146 thousand downloads last month - 1,778 stars on GitHub - 3 maintainers
scanpy 1.10.1
Single-Cell Analysis in Python.78 versions - Latest release: about 2 months ago - 416 dependent packages - 493 dependent repositories - 146 thousand downloads last month - 1,778 stars on GitHub - 3 maintainers
Top 4.7% on pypi.org
9 versions - Latest release: 12 months ago - 24 dependent packages - 12 dependent repositories - 37.2 thousand downloads last month - 66 stars on GitHub - 1 maintainer
mudata 0.2.3
Multimodal omics analysis framework9 versions - Latest release: 12 months ago - 24 dependent packages - 12 dependent repositories - 37.2 thousand downloads last month - 66 stars on GitHub - 1 maintainer
cirrocumulus 1.1.57
Bring your single-cell data to life143 versions - Latest release: 8 months ago - 1 dependent repositories - 887 downloads last month - 64 stars on GitHub - 3 maintainers
Top 4.7% on pypi.org
9 versions - Latest release: about 2 months ago - 15 dependent packages - 6 dependent repositories - 7.57 thousand downloads last month - 198 stars on GitHub - 1 maintainer
muon 0.1.6
Multimodal omics analysis framework9 versions - Latest release: about 2 months ago - 15 dependent packages - 6 dependent repositories - 7.57 thousand downloads last month - 198 stars on GitHub - 1 maintainer
grnndata 0.1.0
Awesome gene regulatory network enhanced anndata1 version - Latest release: 5 months ago - 1 dependent package - 20 downloads last month - 1 stars on GitHub - 1 maintainer
adata-query 0.0.2
Fetch and format data matrices from AnnData.8 versions - Latest release: 7 months ago - 4 dependent packages - 94 downloads last month - 0 stars on GitHub - 1 maintainer
mudatasets 0.0.2
Multimodal Datasets in MuData format2 versions - Latest release: over 1 year ago - 1 dependent repositories - 74 downloads last month - 3 stars on GitHub - 1 maintainer
metaspace-converter 1.1.1
Convert Metaspace datasets to AnnData4 versions - Latest release: 3 months ago - 40 downloads last month - 7 stars on GitHub - 1 maintainer
ann-nmf 0.0.1
ann_nmf - AnnData wrapper of the ARD-NMF module from SignatureAnalyzer2 versions - Latest release: over 2 years ago - 1 dependent repositories - 33 downloads last month - 1 stars on GitHub - 1 maintainer
rapids-singlecell 0.10.3
running single cell analysis on Nvidia GPUs26 versions - Latest release: 22 days ago - 1 dependent package - 1.32 thousand downloads last month - 83 stars on GitHub - 1 maintainer
adpbulk 0.1.4
Pseudo-Bulking Single-Cell RNA-seq5 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 161 downloads last month - 19 stars on GitHub - 1 maintainer
gtfast 0.0.3
GTFast - cache and subset a `.gtf` file as a `.csv` for faster subsequent use.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 25 downloads last month - 2 stars on GitHub - 1 maintainer
vintools 0.0.55
vintools - Michael Vinyard's utilities.23 versions - Latest release: over 2 years ago - 1 dependent repositories - 161 downloads last month - 2 stars on GitHub - 1 maintainer
annoyance 0.0.18
annoyance - single-cell AnnData wrapper of Spotify's Annoy library.8 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 82 downloads last month - 1 stars on GitHub - 1 maintainer
anngtf 0.0.11
anngtf - lift annotations from a `.gtf` file to your AnnData object.3 versions - Latest release: about 2 years ago - 32 downloads last month - 2 stars on GitHub - 1 maintainer
featherplot 0.0.6
featherplot6 versions - Latest release: 10 months ago - 4 downloads last month - 0 stars on GitHub - 1 maintainer
akey 0.0.5
akey5 versions - Latest release: 2 months ago - 1 dependent package - 194 downloads last month - 1 maintainer
scmorph 0.1.0 removed
Single-cell morphological analysis1 version - Latest release: almost 2 years ago - 27 downloads last month
Related Keywords
single-cell
13
python
10
scanpy
10
scverse
10
bioinformatics
8
genomics
5
data-science
4
transcriptomics
4
single
3
cell
3
scrna-seq
3
muon
3
multi-omics
3
mudata
3
machine-learning
3
gtf
2
gff
2
gencode
2
seq
2
RNA-seq
2
sc
2
multimodal-omics-analysis
2
visualize-data
2
extras
2
extra
2
rna-seq
2
xsc
1
pseudobulk
1
differential-expression
1
gpu
1
nmf
1
lineage-tracing
1
chromatin-accessibility
1
morphology
1
crispr
1
gene-expression
1
akey
1
parquet-format
1
parquet
1
google-cloud
1
approximate-nearest-neighbor-search
1
feather-format
1
cell-type-classifier
1
featherplot
1
feather
1
pyarrow
1
arrow
1
nearest-neighbors
1
adata
1
pytorch
1
deseq2
1
rna
1
tximport
1
graph-learning
1
microscopy
1
pytorch-geometric
1
plotting
1
data-analysis
1
10x
1
data-visualization
1
seurat
1
smartseq2
1
spatial
1
visualization
1
webgl
1
cite-seq
1
multimodal-data
1
scatac-seq
1
scRNAseq
1
gene regulatory networks
1
scPrint
1
gene-regulatory-network
1
utils
1
multimodal-omics
1
multiome
1
metaspace
1
spatialdata
1