pypi.org "anndata" keyword
View the packages on the pypi.org package registry that are tagged with the "anndata" keyword.
pytximport 0.12.0 💰
A python implementation of `tximport` to transform transcript into gene counts14 versions - Latest release: 5 months ago - 110 downloads last month - 37 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
14 versions - Latest release: 3 months ago - 24 dependent packages - 12 dependent repositories - 87.6 thousand downloads last month - 99 stars on GitHub - 1 maintainer
mudata 0.3.2
Multimodal data14 versions - Latest release: 3 months ago - 24 dependent packages - 12 dependent repositories - 87.6 thousand downloads last month - 99 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
10 versions - Latest release: 10 months ago - 15 dependent packages - 6 dependent repositories - 9.71 thousand downloads last month - 245 stars on GitHub - 1 maintainer
muon 0.1.7
Multimodal omics analysis framework10 versions - Latest release: 10 months ago - 15 dependent packages - 6 dependent repositories - 9.71 thousand downloads last month - 245 stars on GitHub - 1 maintainer
annsel 0.1.1
A Narwhals powered DataFrame-style selection, filtering and indexing operations on AnnData Objects.11 versions - Latest release: 5 months ago - 128 downloads last month - 10 stars on GitHub - 1 maintainer
Top 1.2% on pypi.org
88 versions - Latest release: about 1 month ago - 416 dependent packages - 493 dependent repositories - 787 thousand downloads last month - 1,778 stars on GitHub - 3 maintainers
scanpy 1.11.4
Single-Cell Analysis in Python.88 versions - Latest release: about 1 month ago - 416 dependent packages - 493 dependent repositories - 787 thousand downloads last month - 1,778 stars on GitHub - 3 maintainers
smftools 0.1.7
Single Molecule Footprinting Analysis in Python.5 versions - Latest release: 3 months ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.7% on pypi.org
100 versions - Latest release: 27 days ago - 389 dependent packages - 467 dependent repositories - 963 thousand downloads last month - 651 stars on GitHub - 2 maintainers
anndata 0.12.2
Annotated data.100 versions - Latest release: 27 days ago - 389 dependent packages - 467 dependent repositories - 963 thousand downloads last month - 651 stars on GitHub - 2 maintainers
rapids-singlecell 0.13.2
running single cell analysis on Nvidia GPUs47 versions - Latest release: 4 days ago - 1 dependent package - 5.06 thousand downloads last month - 83 stars on GitHub - 1 maintainer
drvi-py 0.1.9
Unsupervised Deep Disentangled Representation of Single-Cell Omics8 versions - Latest release: about 2 months ago - 210 downloads last month - 48 stars on GitHub - 1 maintainer
cellplots 0.0.0
Cell & Genomics Plotting2 versions - Latest release: about 2 years ago - 1 dependent package - 19 downloads last month - 0 stars on GitHub - 1 maintainer
adpbulk 0.1.4
Pseudo-Bulking Single-Cell RNA-seq5 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 53.2 thousand downloads last month - 21 stars on GitHub - 1 maintainer
annoyance 0.0.18
annoyance - single-cell AnnData wrapper of Spotify's Annoy library.8 versions - Latest release: almost 3 years ago - 2 dependent packages - 2 dependent repositories - 87 downloads last month - 1 stars on GitHub - 1 maintainer
ann-nmf 0.0.1
ann_nmf - AnnData wrapper of the ARD-NMF module from SignatureAnalyzer2 versions - Latest release: over 3 years ago - 1 dependent repositories - 39 downloads last month - 1 stars on GitHub - 1 maintainer
cirrocumulus 1.1.60
Bring your single-cell data to life147 versions - Latest release: 9 days ago - 1 dependent repositories - 1.01 thousand downloads last month - 88 stars on GitHub - 3 maintainers
cytetype 0.9.2
Python client for characterization of clusters from single-cell RNA-seq data.26 versions - Latest release: 9 days ago - 679 downloads last month - 37 stars on GitHub - 1 maintainer
featherplot 0.0.6
featherplot6 versions - Latest release: about 2 years ago - 17 downloads last month - 0 stars on GitHub - 1 maintainer
sc-average-overlap 1.0.6
A tool for comparing populations in single-cell RNA-seq data with average overlap of marker gene ...5 versions - Latest release: 4 months ago - 22 downloads last month - 2,082 stars on GitHub - 1 maintainer
torch-adata 0.1.1
torch-adata: bridging AnnData-based data models to torch.28 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 52 downloads last month - 20 stars on GitHub - 1 maintainer
gtfast 0.0.3
GTFast - cache and subset a `.gtf` file as a `.csv` for faster subsequent use.2 versions - Latest release: over 3 years ago - 1 dependent repositories - 14 downloads last month - 2 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
12 versions - Latest release: over 5 years ago - 5 dependent packages - 12 dependent repositories - 850 downloads last month - 2,062 stars on GitHub - 3 maintainers
diffxpy 0.7.4
Fast and scalable differential expression analysis on single-cell RNA-seq data12 versions - Latest release: over 5 years ago - 5 dependent packages - 12 dependent repositories - 850 downloads last month - 2,062 stars on GitHub - 3 maintainers
cell-ann 0.0.1
cell-ann: Cell approximate nearest neighbors4 versions - Latest release: almost 2 years ago - 17 downloads last month - 0 stars on GitHub - 1 maintainer
anndash 0.0.9
9 versions - Latest release: 11 months ago - 58 downloads last month - 1 maintainerakey 0.0.5
akey5 versions - Latest release: over 1 year ago - 1 dependent package - 68 downloads last month - 1 maintainer
xsc 0.0.12
xsc12 versions - Latest release: over 1 year ago - 59 downloads last month - 1 maintainer
annsql 1.0.3
A Python SQL tool for converting Anndata objects to a relational DuckDb database. Methods are inc...15 versions - Latest release: 4 months ago - 555 downloads last month - 29 stars on GitHub - 1 maintainer
adata-query 0.1.0
Fetch and format data matrices from AnnData.10 versions - Latest release: 4 months ago - 4 dependent packages - 138 downloads last month - 0 stars on GitHub - 1 maintainer
mudatasets 0.0.2
Multimodal Datasets in MuData format2 versions - Latest release: over 2 years ago - 1 dependent repositories - 58 downloads last month - 3 stars on GitHub - 1 maintainer
grnndata 1.1.5
Awesome gene regulatory network enhanced anndata9 versions - Latest release: 9 months ago - 1 dependent package - 320 downloads last month - 5 stars on GitHub - 1 maintainer
metaspace-converter 1.1.1
Convert Metaspace datasets to AnnData4 versions - Latest release: over 1 year ago - 31 downloads last month - 11 stars on GitHub - 1 maintainer
anndatavis 0.0.8
anndatavis8 versions - Latest release: 7 months ago - 63 downloads last month - 1 maintainer
treedata 0.2.1
anndata with trees10 versions - Latest release: about 2 months ago - 15.5 thousand downloads last month - 5 stars on GitHub - 1 maintainer
geome 0.0.2
Geometric Learning for Genome Data2 versions - Latest release: about 2 years ago - 2 dependent repositories - 108 downloads last month - 16 stars on GitHub - 3 maintainers
vintools 0.0.55
vintools - Michael Vinyard's utilities.23 versions - Latest release: almost 4 years ago - 1 dependent repositories - 82 downloads last month - 2 stars on GitHub - 1 maintainer
anngtf 0.0.11
anngtf - lift annotations from a `.gtf` file to your AnnData object.3 versions - Latest release: over 3 years ago - 14 downloads last month - 2 stars on GitHub - 1 maintainer
bonesistools 1.1.5
BoNesisTools is a python package proposing bioinformatics tools for upstream and downstream analy...8 versions - Latest release: 2 months ago - 579 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
single-cell
16
python
15
bioinformatics
13
scanpy
12
scverse
11
transcriptomics
7
genomics
6
machine-learning
5
data-science
5
mudata
4
visualize-data
3
cell
3
single
3
multi-omics
3
muon
3
RNA-seq
3
scrna-seq
3
spatial
2
chromatin-accessibility
2
seq
2
sc
2
data-visualization
2
extra
2
extras
2
gtf
2
gff
2
gencode
2
multimodal-omics-analysis
2
rna-seq
2
annsql
1
xsc
1
genomic-data-analysis
1
h5ad
1
akey
1
dash
1
plotly
1
pipseq
1
omics
1
anndash
1
nearest-neighbors
1
pytorch
1
approximate-nearest-neighbor-search
1
systems-biology
1
rnaseq
1
gene-regulatory-networks
1
boolean-networks
1
bonesis
1
atacseq
1
google-cloud
1
gene-expression
1
crispr
1
pytorch-geometric
1
microscopy
1
graph-learning
1
lineage-tracing
1
single cell RNA
1
spatialdata
1
metaspace
1
utils
1
gene-regulatory-network
1
scRNAseq
1
scPRINT
1
gene regulatory networks
1
multiome
1
multimodal-omics
1
sql
1
pseudobulk
1
differential-expression
1
plotting
1
integration
1
disentanglement
1
gpu
1
protein-dna-interactions
1
nanopore-sequencing
1
chromatin-accessibiity
1
single-molecule-footprinting
1
single-locus
1
protein-dna-binding
1
nanopore
1
narwhals
1
scatac-seq
1
multimodal-data
1
cite-seq
1
data-analysis
1
tximport
1
rna
1
deseq2
1
adata
1
scRNA-seq
1
parquet-format
1
parquet
1
feather-format
1
arrow
1
pyarrow
1
feather
1
featherplot
1
marker-genes
1
llm-agent
1
celltype-identification
1
celltype-annotation
1