Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "SNP" keyword
admix 1.2
An admixture analysis tool that supports raw data from 23andme, AncestryDNA, etc.6 versions - Latest release: over 5 years ago - 1 dependent repositories - 82 downloads last month - 43 stars on GitHub - 1 maintainer
anvio 2.4.0
An interactive analysis and visualization platform for 'omics data. See https://merenlab.org/proj...29 versions - Latest release: almost 7 years ago - 2 dependent repositories - 95 downloads last month - 1 maintainer
snpio 1.0.5
Reads and writes VCF, PHYLIP, and STRUCTURE files and performs data filtering on the alignment.16 versions - Latest release: 8 months ago - 1 dependent package - 139 downloads last month - 2 stars on GitHub - 1 maintainer
varbscore 1.0.3
A python package to calculate varBscore using vcf input4 versions - Latest release: about 3 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
tabixpy 1.5.2
Tabix reader written 100% in Python5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 50 downloads last month - 7 stars on GitHub - 1 maintainer
gmarrayfilter 1.0.3
A python package to filter SNP array data4 versions - Latest release: over 2 years ago - 1 dependent repositories - 18 downloads last month - 1 maintainer
egrm 0.1
Expected Genetic Relationship Matrix1 version - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 6 stars on GitHub - 1 maintainer
mutation-simulator 3.0.2
A tool for simulating random mutations in any genome3 versions - Latest release: 4 months ago - 1 dependent repositories - 52 downloads last month - 30 stars on GitHub - 1 maintainer
array-as-vcf 1.1.0
Convert SNP array to VCF3 versions - Latest release: almost 2 years ago - 47 downloads last month - 2 maintainers
arv 0.9.2
A fast 23andMe raw genome file parser11 versions - Latest release: about 7 years ago - 221 downloads last month - 114 stars on GitHub - 1 maintainer
bio-hansel 2.6.1
Subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes.19 versions - Latest release: about 3 years ago - 1 dependent repositories - 119 downloads last month - 25 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics
6
snps
3
genome
3
VCF
2
NGS
2
Reseq
2
vcf
2
genomics
2
bio
2
DNA
2
Aho-Corasick
1
lumi370k
1
Cytoscan
1
OpenArray
1
convert
1
array
1
svs
1
sv
1
snp
1
biallelic
1
SNPs
1
SV
1
simulator
1
simulation
1
mutation
1
SVs
1
Bioinformatics
1
subtyping
1
kmer
1
Enteritidis
1
Heidelberg
1
enterica
1
Salmonella
1
snpedia
1
python
1
dna
1
23andme
1
RSID
1
RNA
1
protein
1
health
1
gene
1
disease
1
biopython
1
biology
1
23andMe
1
Affymetrix
1
lumi317k
1
MAF
1
filtering
1
missing data
1
STRUCTURE
1
PHYLIP
1
population genetics
1
SNV
1
visualization
1
bam
1
sequencing
1
pipeline
1
MBL
1
shotgun
1
microbiology
1
metatranscriptomics
1
metagenomics
1
admixture
1
ancestry
1
Genome
1
Simulation
1
Mutation
1
coalescence
1
genetics
1
tabix
1
Genomics
1
Tabix
1
vcf-files
1
structure-alignment
1
principal-component-analysis
1
plots
1
phylip
1
missing-data
1
minor-allele-frequency
1
input-output
1
genotypes
1
file-converter
1
dna-sequence-alignment
1