pypi.org "variant" keyword
View the packages on the pypi.org package registry that are tagged with the "variant" keyword.
Top 9.3% on pypi.org
7 versions - Latest release: over 6 years ago - 1 dependent package - 17 dependent repositories - 38.3 thousand downloads last month - 23 stars on GitHub - 2 maintainers
myvariant 1.0.0
Python Client for MyVariant.Info services.7 versions - Latest release: over 6 years ago - 1 dependent package - 17 dependent repositories - 38.3 thousand downloads last month - 23 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
13 versions - Latest release: 8 months ago - 6 dependent packages - 74 dependent repositories - 149 thousand downloads last month - 18 stars on GitHub - 2 maintainers
biothings-client 0.4.1
Python Client for BioThings API services.13 versions - Latest release: 8 months ago - 6 dependent packages - 74 dependent repositories - 149 thousand downloads last month - 18 stars on GitHub - 2 maintainers
km-walk 2.2.2
A software for RNA-seq investigation using k-mer decomposition4 versions - Latest release: over 1 year ago - 1 dependent repositories - 29 downloads last month - 10 stars on GitHub - 2 maintainers
vatools 5.2.0
A tool for annotating VCF files with expression and readcount data10 versions - Latest release: 6 months ago - 1 dependent repositories - 249 downloads last month - 29 stars on GitHub - 3 maintainers
pyhgvs2 3.0.0
Fork of pyhgvs4 versions - Latest release: 9 days ago - 110 downloads last month - 1 stars on GitHub - 1 maintainer
sumtype 0.10.0
A namedtuple-style library for defining immutable sum types in Python.8 versions - Latest release: almost 7 years ago - 1 dependent repositories - 18 downloads last month - 27 stars on GitHub - 1 maintainer
mucor 1.51
Genomic Variant Aggregation and Mutation Correlation2 versions - Latest release: over 9 years ago - 2 dependent repositories - 8 downloads last month - 12 stars on GitHub - 1 maintainer
hmmcnv 1.1.6
Python package for Copy-Number Variation calling10 versions - Latest release: 10 months ago - 1 dependent repositories - 197 downloads last month - 2 stars on GitHub - 1 maintainer
genomicsdb 0.1.6
Python Bindings for querying GenomicsDB40 versions - Latest release: 6 months ago - 1 dependent repositories - 549 downloads last month - 1 stars on GitHub - 2 maintainers
vcfio 1.2.0
A simple and efficient VCF manipulation package.13 versions - Latest release: about 1 month ago - 1 dependent repositories - 642 downloads last month - 9 stars on GitHub - 1 maintainer
picus 0.0.5
Pointed Interpretation of Clinical Variant Significance5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
mutalyzer 3.1.1
Mutalyzer HGVS variant description tools.12 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 418 downloads last month - 44 stars on GitHub - 1 maintainer
gepyto 0.10.1
Utilities and tools to interface with genomic databases and to facilitate common bioinformatics t...3 versions - Latest release: almost 10 years ago - 3 dependent repositories - 316 downloads last month - 7 stars on GitHub - 1 maintainer
variant-extractor 5.0.0
Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files.11 versions - Latest release: 5 months ago - 1 dependent package - 153 downloads last month - 7 stars on GitHub - 1 maintainer
vcf-annotation-tools 3.0.0
A tool for annotating VCF files with expression and readcount data15 versions - Latest release: over 6 years ago - 1 dependent repositories - 46 downloads last month - 29 stars on GitHub - 1 maintainer
pvacseq 4.0.10
Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq)20 versions - Latest release: about 8 years ago - 2 dependent repositories - 67 downloads last month - 61 stars on GitHub - 2 maintainers
prody-rhapsody 0.9.8
Python program, based on ProDy, for pathogenicity prediction of human missense variants.6 versions - Latest release: over 5 years ago - 1 dependent repositories - 18 downloads last month - 10 stars on GitHub - 1 maintainer
mutalyzer-mutator 0.2.0
Mutalyzer sequence mutator.5 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 1.35 thousand downloads last month - 0 stars on GitHub - 1 maintainer
deepsvr 0.0.1.post1
Automated Somatic Variant Refinement by Deep Learning1 version - Latest release: over 7 years ago - 1 dependent repositories - 12 downloads last month - 50 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
91 versions - Latest release: 12 days ago - 1 dependent repositories - 541 downloads last month - 157 stars on GitHub - 3 maintainers
pvactools 5.5.1
A cancer immunotherapy tools suite91 versions - Latest release: 12 days ago - 1 dependent repositories - 541 downloads last month - 157 stars on GitHub - 3 maintainers
ngs-analysis 0.0.6
Analyze deep sequencing of complex libraries6 versions - Latest release: over 1 year ago - 18 downloads last month - 0 stars on GitHub - 1 maintainer
mutalyzer-hgvs-parser 0.3.8
Mutalyzer HGVS variant description parser.20 versions - Latest release: 6 months ago - 2 dependent packages - 1 dependent repositories - 1.57 thousand downloads last month - 0 stars on GitHub - 1 maintainer
variant-spark 0.5.2
VariantSpark Python API36 versions - Latest release: almost 3 years ago - 1 dependent repositories - 32 downloads last month - 146 stars on GitHub - 3 maintainers
charger 0.5.2
Characterization of Germline variants4 versions - Latest release: over 7 years ago - 1 dependent repositories - 49 downloads last month - 98 stars on GitHub - 2 maintainers
mython 0.0.2
The Mython extensible variant of the Python programming language.1 version - Latest release: about 2 years ago - 2 dependent repositories - 1 maintainer
seq-pigeon 0.4.3
Pipeline tool for NGS data17 versions - Latest release: almost 5 years ago - 1 dependent repositories - 13 downloads last month - 963 stars on GitHub - 1 maintainer
mitywgs 2.0.0 💰
A sensitive Mitochondrial variant detection pipeline from WGS data13 versions - Latest release: 3 months ago - 1 dependent repositories - 44 downloads last month - 35 stars on GitHub - 3 maintainers
exoclasma-note 0.9.0
Exo-C Data Quality Check, Mapping, and Variant Calling, part of ExoClasma Suite1 version - Latest release: over 2 years ago - 8 downloads last month - 0 stars on GitHub - 1 maintainer
myvariant-api 1.0
A simple API wrapper for the MyVariant.info API.1 version - Latest release: about 10 years ago - 2 dependent repositories - 3 downloads last month - 1 maintainer
exoclasma-pipe 0.9.1
Exo-C Data Quality Check, Mapping, and Variant Calling, part of ExoClasma Suite2 versions - Latest release: almost 3 years ago - 7 downloads last month - 0 stars on GitHub - 1 maintainer
seq-dove 0.4.4
Set of tools for downstream vcf analysis24 versions - Latest release: almost 5 years ago - 1 dependent repositories - 65 downloads last month - 1 maintainer
Top 8.9% on pypi.org
33 versions - Latest release: 3 months ago - 1 dependent repositories - 671 downloads last month - 324 stars on GitHub - 1 maintainer
igv-reports 1.15.1
Creates self-contained html pages for visual variant review with IGV (igv.js).33 versions - Latest release: 3 months ago - 1 dependent repositories - 671 downloads last month - 324 stars on GitHub - 1 maintainer
varpepdb 1.0.4
Generate reference database of variant peptides for peptide spectrum matching3 versions - Latest release: 3 months ago - 105 downloads last month - 0 stars on GitHub - 1 maintainer
oakvar 2.12.19 💰
A genomic variant analysis platform326 versions - Latest release: 4 months ago - 1 dependent repositories - 695 downloads last month - 39 stars on GitHub - 1 maintainer
pvacseq-client 0.0.2
Web Front-End for pVAC-Seq3 versions - Latest release: over 8 years ago - 1 dependent package - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 3 maintainers
vcf2networks 1.0.8
calculate Genotype Networks from VCF files18 versions - Latest release: almost 12 years ago - 2 dependent repositories - 33 downloads last month - 1 maintainer
etiennevar 1.0.4
Outil en ligne de commande pour résumer et visualiser les fichiers VCF5 versions - Latest release: about 2 months ago - 1 maintainer
palamedes 0.0.9
Palamedes: HGVS variants from a sequence alignment6 versions - Latest release: about 1 year ago - 162 downloads last month - 3 stars on GitHub - 1 maintainer
variant 0.0.98
annotate variant98 versions - Latest release: 3 months ago - 4 dependent repositories - 2.16 thousand downloads last month - 1 stars on GitHub - 1 maintainer
ensembl-variant-lookup 0.1.2
a user-friendly interface for searching individual variants, batch queries, and exploring gene re...3 versions - Latest release: over 1 year ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
vcf-kit 0.2.9
Assorted utilities for the variant call format16 versions - Latest release: over 4 years ago - 1 dependent repositories - 153 downloads last month - 131 stars on GitHub - 1 maintainer
howard-ann 0.12.1
HOWARD - Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery2 versions - Latest release: 9 months ago - 9 downloads last month - 10 stars on GitHub - 1 maintainer
pytest-variant 1.1.0
Variant support for Pytest2 versions - Latest release: over 3 years ago - 1 dependent repositories - 22 downloads last month - 1 stars on GitHub - 1 maintainer
dysgu 1.8.6
Structural variant calling39 versions - Latest release: about 1 month ago - 1 dependent repositories - 580 downloads last month - 107 stars on GitHub - 1 maintainer
varscore 0.0.1a0
A library for common functions in variant effect prediction & prioritization.1 version - Latest release: 8 months ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
plink-bed-reader 1.0.2
Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and indiv...3 versions - Latest release: 7 months ago - 15 downloads last month - 3 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
18
genomics
12
sequencing
11
genetics
9
variants
8
vcf
8
VCF
5
cancer
5
annotation
4
hgvs
4
genome
3
python
3
next
3
neoantigens
3
antigens
3
api
3
gene
3
generation
3
Mutalyzer
3
description
3
genetic
2
mutalyzer
2
discovery
2
genomic
2
HGVS
2
indel
2
mutation
2
syntax
2
prioritization
2
DNA
2
snv
2
variant-calling
2
human
2
clinical
2
client
2
service
2
web
2
biology
2
expression
2
readcounts
2
transcript
2
VAF
2
allele
2
frequency
2
FPKM
2
TPM
2
characterization
1
igv
1
annotations
1
acmg
1
classifier
1
visualization
1
germline
1
proteomics
1
BioMine
1
forensics
1
fasta
1
VEP
1
peptide
1
analysis
1
interpretation
1
extensible
1
pipeline
1
vep
1
pathogenicity
1
mitochondrial
1
pathogenic-variants
1
gnomad
1
SNV
1
germline-variants
1
INDEL
1
mitochondria
1
precision-medicine
1
exac
1
whole-genome-sequencing
1
diseases
1
adapters
1
clinvar
1
calling
1
mapping
1
duckdb
1
parquet
1
snpeff
1
variations
1
pytest
1
pytest-plugin
1
long-read
1
paired-end
1
structural
1
structural-variation
1
variant scoring
1
variant effect
1
variant prioritization
1
scoring
1
effect
1
chrombpnet
1
bed
1
plink
1
genotype
1
nucleotide variant
1