pypi.org "fastq" keyword
View the packages on the pypi.org package registry that are tagged with the "fastq" keyword.
exoclasma-fastq 0.9.0
Different file formats to FastQ, part of ExoClasma Suite1 version - Latest release: over 2 years ago - 25 downloads last month - 0 stars on GitHub - 1 maintainer
filterx 0.3.6
A command line tool to filter data by using python-like syntax16 versions - Latest release: 2 months ago - 4.13 thousand downloads last month - 22 stars on GitHub - 1 maintainer
rnaseeker 1.0.0
RNA-seq scripts and libraries1 version - Latest release: about 1 year ago - 47 downloads last month - 1 stars on GitHub - 1 maintainer
fastq-and-furious 0.3.2
Fast handling of FASTQ files6 versions - Latest release: over 3 years ago - 2 dependent repositories - 232 downloads last month - 51 stars on GitHub - 1 maintainer
fqtool 1.3.3
Tool to parse and filter FASTQ files8 versions - Latest release: about 7 years ago - 1 dependent repositories - 252 downloads last month - 1 maintainer
sequana-downsampling 0.9.0
downsample NGS data sets5 versions - Latest release: over 2 years ago - 1 dependent repositories - 95 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
68 versions - Latest release: 4 months ago - 18 dependent packages - 28 dependent repositories - 37.2 thousand downloads last month - 277 stars on GitHub - 1 maintainer
pyfastx 2.2.0
pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file68 versions - Latest release: 4 months ago - 18 dependent packages - 28 dependent repositories - 37.2 thousand downloads last month - 277 stars on GitHub - 1 maintainer
fast2q 2.7.8
A Python3 program that counts sequence occurences in fastq files.24 versions - Latest release: 4 days ago - 1 dependent repositories - 942 downloads last month - 8 stars on GitHub - 1 maintainer
fastq-dl 3.0.1
Download FASTQ files from SRA or ENA repositories.7 versions - Latest release: 28 days ago - 1 dependent repositories - 21 thousand downloads last month - 318 stars on GitHub - 1 maintainer
geodl 1.0b21
Dowload FASTQ files from GEO-NCBI with ease.11 versions - Latest release: about 4 years ago - 1 dependent repositories - 297 downloads last month - 0 stars on gitlab.com - 1 maintainer
zfq 1.0.0
FastQ file compressor1 version - Latest release: about 1 year ago - 31 downloads last month - 1 stars on GitHub - 1 maintainer
dnadesign 0.1.8
Python bindings for dnadesign9 versions - Latest release: 6 months ago - 604 downloads last month - 23 stars on GitHub - 1 maintainer
fast5seek 0.1.1
Get paths for fast5 files contained in BAM, SAM, or fastq.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 71 downloads last month - 12 stars on GitHub - 1 maintainer
bio-wrangler 0.2
A bioinformatics data wrangling package for FASTA, FASTQ, VCF, and GFF files.2 versions - Latest release: 6 months ago - 86 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
27 versions - Latest release: 6 months ago - 1 dependent repositories - 655 downloads last month - 521 stars on GitHub - 1 maintainer
biocode 0.12.0
Bioinformatics code libraries and scripts27 versions - Latest release: 6 months ago - 1 dependent repositories - 655 downloads last month - 521 stars on GitHub - 1 maintainer
bio-juno 1.0.0
Juno: read data generator1 version - Latest release: almost 3 years ago - 44 downloads last month - 0 stars on GitHub - 1 maintainer
mergegi 0.2.2
Merge MGI fastq files4 versions - Latest release: over 2 years ago - 1 dependent repositories - 118 downloads last month - 3 stars on GitHub - 2 maintainers
pydemult 0.4.1
Streamed and parallel demultiplexing of fastq files in python7 versions - Latest release: over 6 years ago - 1 dependent repositories - 225 downloads last month - 2 stars on GitHub - 1 maintainer
sequana-merge-flowcells 0.9.3
Merge FastQ from different projects (flowcells) into single project1 version - Latest release: over 4 years ago - 1 dependent repositories - 23 downloads last month - 1 maintainer
fuc 0.38.0 💰
Frequently used commands in bioinformatics39 versions - Latest release: 10 months ago - 1 dependent package - 2 dependent repositories - 3.23 thousand downloads last month - 48 stars on GitHub - 1 maintainer
demort 0.2.4
DEmultiplexing MOnitoring Report Tool3 versions - Latest release: over 5 years ago - 1 dependent repositories - 96 downloads last month - 0 stars on GitHub - 1 maintainer
fastqwiper 2024.1.93
An ensemble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired rea...22 versions - Latest release: 11 months ago - 1 dependent repositories - 150 downloads last month - 24 stars on GitHub - 1 maintainer
al-dente-fasta 0.1.0
Tool to analyze quality control of fastq files1 version - Latest release: 18 days ago
mercat2 1.4.1
versatile k-mer counter and diversity estimator for database independent property analysis (DIPA)...8 versions - Latest release: about 1 year ago - 1 dependent repositories - 226 downloads last month - 11 stars on GitHub - 2 maintainers
hubmap-fastq-utils 0.2.5
FASTQ utility functions for HuBMAP computational pipelines2 versions - Latest release: almost 3 years ago - 2 dependent repositories - 39 downloads last month - 0 stars on GitHub - 1 maintainer
biopython.convert 1.3.3
Interconvert various file formats supported by biopython. Supports querying records with JMESPath.9 versions - Latest release: almost 3 years ago - 139 downloads last month - 4 stars on GitHub - 1 maintainer
strandex 0.4.1
Strand-anchored regex for expansion or contraction of FASTQ files5 versions - Latest release: almost 8 years ago - 3 dependent repositories - 143 downloads last month - 11 stars on GitHub - 1 maintainer
kmerdb 0.8.15 💰
Yet another correction to the 'yet another correction to just a k-mer counter...'50 versions - Latest release: 26 days ago - 1 dependent repositories - 662 downloads last month - 12 stars on GitHub - 1 maintainer
pyfq 0.0.6
Fastq manipulations and quality check6 versions - Latest release: over 6 years ago - 1 dependent repositories - 122 downloads last month - 1 maintainer
fastq 2.0.4
A simple FASTQ reader / toolbox for small to medium size projects without dependencies.9 versions - Latest release: about 1 year ago - 1 dependent repositories - 1.31 thousand downloads last month - 5 stars on GitHub - 1 maintainer
fastx-barber 0.1.5
FASTX trimming tools7 versions - Latest release: almost 4 years ago - 1 dependent repositories - 168 downloads last month - 4 stars on GitHub - 1 maintainer
fastools 1.1.5
FASTA/FASTQ analysis and manipulation toolkit.26 versions - Latest release: over 2 years ago - 2 dependent repositories - 450 downloads last month - 0 stars on GitHub - 1 maintainer
demultiplex 1.2.2
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes9 versions - Latest release: over 3 years ago - 1 dependent repositories - 256 downloads last month - 33 stars on GitHub - 1 maintainer
convertfq 0.1.0
convertFQ is used to convert either DNA2RNA or RNA2DNA in a fastq file1 version - Latest release: almost 3 years ago - 34 downloads last month - 0 stars on GitHub - 1 maintainer
readstore-cli 1.3.0
ReadStore Command Line Interface (CLI) Is A Python Package For Accessing Data from the ReadStore API7 versions - Latest release: 2 months ago - 214 downloads last month - 1 stars on GitHub - 1 maintainer
ngsderive 4.0.0
Forensic analysis tool useful in backwards computing information from next-generation sequencing ...24 versions - Latest release: over 1 year ago - 1 dependent repositories - 389 downloads last month - 11 stars on GitHub - 1 maintainer
fastqsplitter 1.2.0
Splits FASTQ files evenly.3 versions - Latest release: over 5 years ago - 2 dependent packages - 3 dependent repositories - 508 downloads last month - 19 stars on GitHub - 1 maintainer
barcode-splitter 0.18.6
A utility to split multiple sequence files using multiple sets of barcodes7 versions - Latest release: over 5 years ago - 651 downloads last month - 2 maintainers
lrplots 0.7.0
Plot collection for Long Read Sequencing8 versions - Latest release: about 2 years ago - 1 dependent repositories - 166 downloads last month - 12 stars on GitHub - 1 maintainer
itermae 0.6.0
Commandline tool for parsing NGS reads by multiple fuzzy regex operations8 versions - Latest release: almost 4 years ago - 1 dependent repositories - 251 downloads last month - 0 stars on gitlab.com - 1 maintainer
ktio 0.1
A collection of functions for fasta/fastq i/o in Python1 version - Latest release: over 7 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 1 maintainer
vcfwiper 2021.1.4 removed
A package to wipe out uncompliant VCF files1 version - Latest release: almost 4 years ago - 1 dependent repositories - 6 downloads last month - 1 maintainer
Related Keywords
bioinformatics
25
fasta
13
ngs
8
sam
6
python
6
genomics
4
bam
4
sequencing
3
sra
3
barcode
3
gff
3
sequence
2
demultiplex
2
ncbi
2
computational-biology
2
genbank
2
nanopore
2
regex
2
vcf
2
demultiplexing
2
k-mer-frequency
2
k-mer-counting
2
parser
2
sequana
2
gtf
2
gff3
2
dna
2
snakemake
2
bio
2
k-mer
1
qualitycontrol
1
fuzzy
1
filter
1
embl
1
biopython
1
kmer
1
bgzf
1
convert
1
protein
1
plotly
1
nucleotides
1
amplicon
1
extractor
1
multiomics-data
1
multiomics
1
metatranscriptomic-analysis
1
metagenomic-analysis
1
kmer-frequency-count
1
divideandconquer
1
diversity-estimation
1
diversity
1
database-independent-analysis
1
dask
1
genetics
1
extracter
1
i/o
1
FastQC
1
screening
1
k-mer-hashing
1
regular-expression
1
trim
1
trimmer
1
paired
1
converter
1
dna-sequences
1
metagenomics
1
rna-seq
1
transcriptomics
1
gene-model
1
next-generation-sequencing
1
strandedness
1
strandedness-inference
1
workflow
1
workflow-engine
1
split
1
plot
1
python-cli
1
next
1
generation
1
quality
1
check
1
FASTQ
1
reader
1
toolbox
1
trimming
1
bioinformatics-tool
1
longread
1
extract-flags
1
fastx
1
fastx-barber
1
hacktoberfest
1
download
1
SRA
1
ENA
1
geo
1
bioinformatic
1
genomic
1
compression
1
codon-optimization
1
codon-usage
1