Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "genome-assembly" keyword
Top 10.0% on pypi.org
8 versions - Latest release: over 2 years ago - 2 dependent repositories - 145 downloads last month - 430 stars on GitHub - 1 maintainer
ragtag 2.1.0
Fast reference-guided genome assembly scaffolding8 versions - Latest release: over 2 years ago - 2 dependent repositories - 145 downloads last month - 430 stars on GitHub - 1 maintainer
cobra-meta 1.2.3
COBRA (Contig Overlap Based Re-Assembly) is a bioinformatics tool to get higher quality viral gen...4 versions - Latest release: 3 months ago - 59 downloads last month - 37 stars on GitHub - 1 maintainer
teloclip 0.0.4
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.3 versions - Latest release: 6 months ago - 1 dependent repositories - 28 downloads last month - 29 stars on GitHub - 1 maintainer
instagraal 0.1.6
Large genome reassembly based on Hi-C data.6 versions - Latest release: about 5 years ago - 1 dependent repositories - 49 downloads last month - 34 stars on GitHub - 3 maintainers
helen 0.0.23
RNN based assembly HELEN. It works paired with MarginPolish.19 versions - Latest release: about 4 years ago - 1 dependent repositories - 136 downloads last month - 68 stars on GitHub - 1 maintainer
camsa 1.0.0
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies35 versions - Latest release: over 7 years ago - 229 downloads last month - 24 stars on GitHub - 1 maintainer
tigmint 1.1.2
Correct misassemblies using linked reads1 version - Latest release: over 5 years ago - 2 dependent repositories - 21 downloads last month - 54 stars on GitHub - 1 maintainer
makura 1.2.0
NCBI Genome downloader4 versions - Latest release: about 1 year ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
redundans 0.13a5
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.6 versions - Latest release: over 7 years ago - 1 dependent repositories - 50 downloads last month - 107 stars on GitHub - 1 maintainer
pyfastg 0.1.0
Minimal Python library for parsing SPAdes FASTG files2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 167 downloads last month - 5 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
5
scaffolding
4
genomics
4
python
3
genome-scaffolding
2
bioinformatics-tool
1
linked-reads
1
misassembly-correction
1
genbank
1
ncbi
1
refseq
1
taxonomy
1
heterozygous
1
genome
1
assembly
1
reduction
1
paired-end
1
long-reads
1
synteny
1
assembled-contigs
1
closing
1
contigs
1
docker-image
1
fasta
1
gap
1
mate-pairs
1
pipeline
1
polymorphic
1
networkx
1
gap-filling
1
manual-curation
1
metagenomics
1
short-read-sequencing
1
viral-metagenomics
1
telomere
1
telomere-length
1
telomeres
1
telomeric
1
3c
1
hi-c
1
genome-analysis
1
genome-scale-models
1
genome-sequencing
1
genomes
1
genomic-data-analysis
1
human-genetics
1
oxford-nanopore
1
comparative genomics
1
genome assembly
1
asssembly-reconciliation
1
comparative-genomics
1
scaffold-assembly
1
10xgenomics
1