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pypi.org "pdb" keyword

View the packages on the pypi.org package registry that are tagged with the "pdb" keyword.

Top 1.2% on pypi.org
pudb 2024.1.3
A full-screen, console-based Python debugger
82 versions - Latest release: 11 months ago - 38 dependent packages - 2,186 dependent repositories - 1.16 million downloads last month - 3,139 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
remote-pdb 2.1.0 💰
Remote vanilla PDB (over TCP sockets) *done right*: no extras, proper handling around connection ...
12 versions - Latest release: about 5 years ago - 4 dependent packages - 256 dependent repositories - 449 thousand downloads last month - 291 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
pdbpp 0.11.7
pdb++, a drop-in replacement for pdb
29 versions - Latest release: about 2 months ago - 197 dependent packages - 1,401 dependent repositories - 750 thousand downloads last month - 1,246 stars on GitHub - 3 maintainers
ipdbx 1.0.4
IPython-enabled pdb with extra functionality and customisation
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 31 downloads last month - 1 maintainer
pdbtextmatesupport 0.2.1
Display source code in TextMate while debugging with pdb.
4 versions - Latest release: over 18 years ago - 1 dependent repositories - 15 downloads last month - 1 maintainer
Top 4.0% on pypi.org
pdb-tools 2.5.0
A swiss army knife for PDB files.
38 versions - Latest release: about 3 years ago - 5 dependent packages - 14 dependent repositories - 16.7 thousand downloads last month - 427 stars on GitHub - 2 maintainers
periodify-pdb 0.1
A package that places a pdb structure into a periodic box
1 version - Latest release: about 2 years ago - 7 downloads last month - 1 maintainer
Top 4.8% on pypi.org
web-pdb 1.6.3
Web interface for Python's built-in PDB debugger
24 versions - Latest release: 10 months ago - 39 dependent repositories - 102 thousand downloads last month - 516 stars on GitHub - 1 maintainer
rna-tools 3.23.1 💰
a toolbox to analyze structures and simulations of RNA
97 versions - Latest release: 7 months ago - 1 dependent repositories - 571 downloads last month - 177 stars on GitHub - 1 maintainer
Top 1.1% on pypi.org
ipdb 0.13.13
IPython-enabled pdb
46 versions - Latest release: over 2 years ago - 411 dependent packages - 20,323 dependent repositories - 9.76 million downloads last month - 1,786 stars on GitHub - 2 maintainers
ptdb 0.2.1
A pdb class based on ptpython
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 38 downloads last month - 0 stars on GitHub - 1 maintainer
hbat 2.2.15
Hydrogen Bond Analysis Tool for PDB structures
36 versions - Latest release: about 1 month ago - 345 downloads last month - 3 stars on GitHub - 1 maintainer
pdbutil 2.1.3
A simple module for handling protein backbone coordinates.
13 versions - Latest release: about 2 months ago - 1 dependent repositories - 48 downloads last month - 1 stars on GitHub - 1 maintainer
pdbi 0.1
Improved IPython-enabled pdb
1 version - Latest release: over 9 years ago - 2 dependent repositories - 7 downloads last month - 6 stars on GitHub - 1 maintainer
st-speckmol 0.0.6
Streamlit component for for Speck molecule visualization.
7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 281 downloads last month - 31 stars on GitHub - 1 maintainer
provis 0.1.0
Protein Visualization Library in Python
25 versions - Latest release: over 3 years ago - 1 dependent repositories - 39 downloads last month - 3 stars on GitHub - 1 maintainer
pdbx-mmcif 0.0.2
Parser for structures in the protein data bank (PDB) in the mmCIF format.
2 versions - Latest release: almost 9 years ago - 1 dependent repositories - 24 downloads last month - 1 stars on GitHub - 1 maintainer
chatdbg 1.0.0 💰
AI-assisted debugging. Uses AI to answer 'why'.
30 versions - Latest release: 5 months ago - 188 downloads last month - 1,018 stars on GitHub - 1 maintainer
betahaus.debug 0.1
Simple debug help with pdb
1 version - Latest release: about 16 years ago - 13 downloads last month - 2 maintainers
pdb-tools-removed-atom-limit 2.4.5
A swiss army knife for PDB files, customized to avoid the original atom limit.
1 version - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
pyjess 0.6.0
Cython bindings and Python interface to JESS, a 3D template matching software.
17 versions - Latest release: 6 days ago - 9.5 thousand downloads last month - 9 stars on GitHub - 1 maintainer
crash-ipdb 0.0.4
Trigger ipdb whenever Python crashes
4 versions - Latest release: almost 3 years ago - 4 dependent repositories - 49 downloads last month - 2 stars on GitHub - 1 maintainer
ircpdb 1.8.1
Remotely and collaboratively debug your Python application via IRC
33 versions - Latest release: about 9 years ago - 2 dependent repositories - 23 downloads last month - 59 stars on GitHub - 1 maintainer
pppele 1.0.10
Protein PELE preparation
11 versions - Latest release: about 3 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 1 maintainer
printbreakpoint 0.9.8
Use breakpoint() to print out filename, line number, and data.
8 versions - Latest release: over 3 years ago - 1 dependent repositories - 13 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-chem 1.0.1
Base Scipion plugin defining objects and protocols for CHEMoinformatics and Virtual Drug Screening.
2 versions - Latest release: 4 months ago - 186 downloads last month - 7 stars on GitHub - 1 maintainer
llama-index-readers-pdb 0.4.0
llama-index readers pdb integration
8 versions - Latest release: about 1 month ago - 56 downloads last month - 41,415 stars on GitHub - 1 maintainer
pdb-attach 3.0.1
A python debugger that can attach to running processes.
12 versions - Latest release: almost 2 years ago - 1 dependent repositories - 116 thousand downloads last month - 36 stars on GitHub - 1 maintainer
teamrubber.pdberrorlog 1.1
Allows a nice interface to the Plone error log from ztc functional tests
2 versions - Latest release: almost 17 years ago - 2 dependent repositories - 11 downloads last month - 1 maintainer
Top 4.4% on pypi.org
pdbr 0.9.2
Pdb with Rich library.
60 versions - Latest release: 3 months ago - 2 dependent packages - 27 dependent repositories - 4.06 million downloads last month - 320 stars on GitHub - 1 maintainer
chatpdb 0.1.14
A chatgpt enabled python debugger
15 versions - Latest release: over 1 year ago - 58 downloads last month - 28 stars on GitHub - 1 maintainer
timetravelpdb 0.1.0
The Time Travel Python Debugger
1 version - Latest release: about 2 years ago - 2 dependent repositories - 4 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
molecularnodes 4.4.3
Toolbox for molecular animations with Blender and Geometry Nodes.
15 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 104 downloads last month - 1,066 stars on GitHub - 1 maintainer
nopdb 0.2.0
Non-interactive Python debugger
4 versions - Latest release: almost 4 years ago - 1 dependent package - 1 dependent repositories - 189 downloads last month - 84 stars on GitHub - 1 maintainer
pyxmolpp2-stubs 0.0.8
PEP 561 type stubs for pyxmolpp2
8 versions - Latest release: over 6 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 1 maintainer
pyxmolpp2 2.0.2
Utils for processing MD
39 versions - Latest release: about 2 years ago - 1 dependent repositories - 100 downloads last month - 6 stars on GitHub - 1 maintainer
bio-jade 1.0
A repository for modules and applications to aid in the design and analysis of Biological molecul...
1 version - Latest release: over 7 years ago - 1 dependent repositories - 15 downloads last month - 8 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
madbg 1.3.2 💰
A fully-featured remote debugger for python
8 versions - Latest release: about 2 years ago - 2 dependent repositories - 4.47 thousand downloads last month - 285 stars on GitHub - 1 maintainer
mr.freeze 1.0a3
Trigger a pdb in a running zope via a USR1 signal
3 versions - Latest release: over 16 years ago - 2 dependent repositories - 9 downloads last month - 2 maintainers
pdbstore 1.1.0
manage PDB and PE files through a local symbols store
9 versions - Latest release: over 1 year ago - 21 downloads last month - 2 stars on GitHub - 1 maintainer
cipdb 0.1.0
Conditional iPDB - Simple conditional debugging for Python
1 version - Latest release: 9 days ago - 1 maintainer
protein-information-system 2.0.0
Comprehensive Python Module for Protein Data Management: Designed for streamlined integration and...
7 versions - Latest release: about 1 month ago - 99 downloads last month - 5 stars on GitHub - 1 maintainer
wingdbg 6.0.9
Zope2 to WingIDE debugging driver
6 versions - Latest release: over 7 years ago - 1 dependent repositories - 4 downloads last month - 2 maintainers
remote-pdb-client 1.0.4
A client for the RemotePDB debugger
7 versions - Latest release: about 6 years ago - 1 dependent repositories - 8.83 thousand downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.4% on pypi.org
epdb 0.15.1
Enhanced Python Debugger
4 versions - Latest release: over 8 years ago - 1 dependent package - 34 dependent repositories - 17.1 thousand downloads last month - 76 stars on GitHub - 2 maintainers
pdb-objects 0.1.3
Object-oriented processing of Protein Databank (PDB) files
4 versions - Latest release: over 6 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 1 maintainer
annotate-lineinfo 0.1
Annotate IDA with source and line number information from a PDB
1 version - Latest release: about 6 years ago - 1 dependent repositories - 18 downloads last month - 12 stars on GitHub - 1 maintainer
pdb2py 1.3
Read a pdb file and return a dictionary
4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 20 downloads last month - 1 maintainer
python-pydebug 0.6
A set of debugging decorators
6 versions - Latest release: about 6 years ago - 1 dependent repositories - 9 downloads last month - 42 stars on GitHub - 1 maintainer
complexconstructor 0.1.6
Generate macrocomplexes superimposing paired interacting elements.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 3 downloads last month - 0 stars on GitHub - 1 maintainer
gevent-tools 0.3.1
gevent utilities library
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 10 downloads last month - 14 stars on GitHub - 1 maintainer
pybug 1.2.1
PyBug extends Python's interactive debugger (pdb), making it simpler to add breakpoints to your c...
4 versions - Latest release: about 7 years ago - 1 dependent repositories - 33 downloads last month - 3 stars on GitHub - 1 maintainer
protein-cluster-conformers 1.2.1
Clusters conformations of monomeric protein
3 versions - Latest release: 10 months ago - 30 downloads last month - 15 stars on GitHub - 1 maintainer
adhoc-pdb 0.1.2
A simple tool that allows you to debug your system whenever you want, with no overhead, even in p...
3 versions - Latest release: over 5 years ago - 1 dependent repositories - 63 downloads last month - 6 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
plip 2.4.0
PLIP - Fully automated protein-ligand interaction profiler
26 versions - Latest release: 9 months ago - 6 dependent repositories - 796 downloads last month - 435 stars on GitHub - 1 maintainer
crops 0.1.1
Cropping and Renumbering Operations for PDB structure and Sequence files
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 21 downloads last month - 1 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
biopandas 0.5.1
Machine Learning Library Extensions
21 versions - Latest release: about 1 year ago - 14 dependent packages - 51 dependent repositories - 19.2 thousand downloads last month - 735 stars on GitHub - 1 maintainer
dm.pdb 1.4.1
Slightly extended and sanitized Python debugger -- Debugger with Zope support
12 versions - Latest release: almost 4 years ago - 2 dependent repositories - 26 downloads last month - 1 maintainer
protein-metamorphisms-is 4.4.0
Comprehensive Python Module for Protein Data Management: Designed for streamlined integration and...
28 versions - Latest release: 3 months ago - 124 downloads last month - 4 stars on GitHub - 1 maintainer
scipion-em-atomstructutils 3.0.3
A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)
8 versions - Latest release: over 4 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
nim-mmcif 0.0.14
mmCIF parser written in Nim with Python bindings
6 versions - Latest release: 15 days ago - 1.06 thousand downloads last month - 3 stars on GitHub - 1 maintainer
pdbcs 0.3
pdb for setuptools console scripts
3 versions - Latest release: over 11 years ago - 2 dependent repositories - 6 downloads last month - 2 stars on GitHub - 1 maintainer
contactextractor 1.0.0
Contact Extractor from PDB/mmCIF coordinate files
2 versions - Latest release: 4 months ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
pymacromol 0.1-dev-r117
Python module to read macro molecules and forcefield files and process it.
1 version - Latest release: about 2 years ago - 2 dependent repositories - 1 maintainer
morepy 0.1.0
getMORE out of your everyday Python experience
5 versions - Latest release: about 6 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
xontrib-debug-tools 0.0.1 💰
Debug tools for xonsh shell.
1 version - Latest release: over 2 years ago - 1 dependent package - 17 downloads last month - 3 stars on GitHub - 1 maintainer
qiskit-xyz2pdb 0.1.2
A simple Python package to convert XYZ files from Qiskit output into PDB structures
3 versions - Latest release: about 2 years ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
poetry-scaffold-plugin 0.1.0
Poetry plugin that installs and configures dev dependencies, so you don't have to.
1 version - Latest release: over 3 years ago - 1 dependent repositories - 13 downloads last month - 1,304 stars on GitHub - 1 maintainer
python-ddd 0.2.3
Pyddd is a super-GDB debugger used to debug python scripts line by line in GDB
5 versions - Latest release: almost 10 years ago - 2 dependent repositories - 11 downloads last month - 9 stars on GitHub - 1 maintainer
iw.debug 0.3
Tools to help debugging a zope based application
3 versions - Latest release: over 17 years ago - 2 dependent repositories - 186 downloads last month - 1 maintainer
pdbsublimetextsupport 0.2
Display source code in Sublime Text 2 while debugging with pdb.
2 versions - Latest release: about 14 years ago - 1 dependent package - 2 dependent repositories - 11 downloads last month - 1 maintainer
Top 4.8% on pypi.org
pytest-pudb 0.7.0
Pytest PuDB debugger integration
6 versions - Latest release: almost 7 years ago - 4 dependent packages - 111 dependent repositories - 360 thousand downloads last month - 58 stars on GitHub - 1 maintainer
protein-topmodel 1.0.1
validate molecular structure models
1 version - Latest release: over 1 year ago - 1 dependent package - 51 downloads last month - 19 stars on GitHub - 1 maintainer
pdbp 1.7.1
pdbp (Pdb+): A drop-in replacement for pdb and pdbpp.
32 versions - Latest release: about 2 months ago - 3 dependent packages - 2 dependent repositories - 536 thousand downloads last month - 94 stars on GitHub - 1 maintainer
pdbplus 1.7.1
pdbp (Pdb+): A drop-in replacement for pdb and pdbpp.
30 versions - Latest release: about 2 months ago - 2.91 thousand downloads last month - 94 stars on GitHub - 1 maintainer
cpdb-protein 0.2.0 💰
Cython implementation of PDB -> DataFrame parsing
3 versions - Latest release: about 2 years ago - 1.44 thousand downloads last month - 23 stars on GitHub - 1 maintainer
collective.testing 0.1dev-r31163
general package for testing and debugging aids for CMF, Plone, Zope2 and Zope3
3 versions - Latest release: about 2 years ago - 3 dependent repositories - 31 downloads last month - 1 maintainer
Top 3.7% on pypi.org
pypdb 2.4
A Python wrapper for the RCSB Protein Data Bank (PDB) API
19 versions - Latest release: over 1 year ago - 6 dependent packages - 21 dependent repositories - 7.21 thousand downloads last month - 326 stars on GitHub - 1 maintainer
pdbeditorsupport 0.4.0
Display source code in your editor while debugging with pdb.
2 versions - Latest release: about 7 years ago - 1 dependent repositories - 893 downloads last month - 1 stars on GitHub - 1 maintainer
proteofav 0.2.3
PROtein Feature Aggregation and Variants.
3 versions - Latest release: almost 8 years ago - 1 dependent repositories - 11 downloads last month - 4 stars on GitHub - 1 maintainer
blendpdb 0.1.2 💰
Blending two PDB files to create solvate
2 versions - Latest release: about 12 years ago - 2 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
pwdtools 1.0.6
tools for password generation, management and checking
7 versions - Latest release: 8 months ago - 64 downloads last month - 0 stars on GitHub - 1 maintainer
py3pdb 0.1.1
A Python3 API for the RCSB Protein Data Bank (PDB).
1 version - Latest release: almost 5 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 1 maintainer
python-debugger-mcp 0.4.0
Model Context Protocol server for Python debugging with AI assistants
1 version - Latest release: 3 months ago - 164 downloads last month - 1 maintainer
pdbprocessor 0.1.1
Simple PDB file processing tool
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
pdbdownload 1.3 💰
A Python script to download PDB files associated with a Portable Executable (PE)
2 versions - Latest release: almost 2 years ago - 35 downloads last month - 117 stars on GitHub - 1 maintainer
wtf 0.1
Post-mortem PDB handler
1 version - Latest release: almost 15 years ago - 155 dependent repositories - 982 downloads last month - 2 stars on GitHub - 1 maintainer
stxnext.pdb 0.2.1
This is extended Python Debugger (pdb). It offers few very useful features that helps in debuggin...
5 versions - Latest release: over 16 years ago - 2 dependent repositories - 26 downloads last month - 2 maintainers
aldepyde 0.0.0a33
A package of chemistry and biochemical tools
4 versions - Latest release: 26 days ago - 13 downloads last month - 1 maintainer
apfid 0.2.0
APFID - Arbitrary Protein Fragment IDentifier parser
2 versions - Latest release: 5 months ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
patdb 0.1.1 💰
Pat's Python debugger
2 versions - Latest release: about 2 months ago - 137 downloads last month - 64 stars on GitHub - 1 maintainer
vimpdb 0.4.5
Vim and Pdb integration
20 versions - Latest release: over 14 years ago - 3 dependent repositories - 57 downloads last month - 203 stars on GitHub - 2 maintainers
molr 0.1.0
Molecular Realm for Spatial Indexed Structures - Fast spatial operations for molecular data
6 versions - Latest release: about 1 month ago - 0 stars on GitHub - 1 maintainer
bugbuzz 0.1.2
Easy to use web-base online debugger
6 versions - Latest release: over 10 years ago - 2 dependent repositories - 19 downloads last month - 104 stars on GitHub - 1 maintainer
pdbbbeditsupport 1.0.1
Display source code in BBEdit while debugging in pdb
2 versions - Latest release: over 13 years ago - 1 dependent repositories - 129 downloads last month - 1 maintainer
unipdb_mapper 1.0.0
Python Package for residue mapping between UniProt and PDB entries.
2 versions - Latest release: 4 months ago - 23 downloads last month - 2 stars on GitHub - 1 maintainer
pdbtest 1.0
A unittest shim to make PDB debugging of test cases easy.
6 versions - Latest release: about 2 years ago - 2 dependent repositories - 20 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.6% on pypi.org
rmsd 1.6.4
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
14 versions - Latest release: 8 months ago - 9 dependent packages - 25 dependent repositories - 4.26 thousand downloads last month - 538 stars on GitHub - 1 maintainer
pdbtextmatesupport2 0.5
Display source code in TextMate while debugging with pdb.
2 versions - Latest release: almost 15 years ago - 1 dependent repositories - 7 downloads last month - 3 stars on GitHub - 1 maintainer
pdb-tools-no-atom-limit 2.4.5 removed
A swiss army knife for PDB files.
3 versions - Latest release: over 3 years ago