pypi.org "molecular-evolution" keyword
Top 6.2% on pypi.org
124 versions - Latest release: 12 days ago - 8 dependent packages - 5 dependent repositories - 5.56 thousand downloads last month - 294 stars on GitHub - 2 maintainers
stk 2026.10.25.0 💰
Automatic molecular construction and design.124 versions - Latest release: 12 days ago - 8 dependent packages - 5 dependent repositories - 5.56 thousand downloads last month - 294 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
91 versions - Latest release: 2 days ago - 5 dependent packages - 5 dependent repositories - 6.98 thousand downloads last month - 139 stars on GitHub - 3 maintainers
cogent3 2026.11.5
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...91 versions - Latest release: 2 days ago - 5 dependent packages - 5 dependent repositories - 6.98 thousand downloads last month - 139 stars on GitHub - 3 maintainers
predsim 0.7.0
Command-line tool for simulating predictive datasets from MrBayes' output.9 versions - Latest release: over 7 years ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
phydms 2.4.2
Phylogenetic analyses informed by deep mutational scanning data.37 versions - Latest release: 7 months ago - 3 dependent repositories - 67 downloads last month - 15 stars on GitHub - 1 maintainer
gains 0.2.1
Genetic Algorithm for Identifying Novel Structures (GAINS)25 versions - Latest release: over 8 years ago - 1 dependent repositories - 56 downloads last month - 6 stars on GitHub - 1 maintainer
fastdtlmapper 0.3.4
Fast genome-wide DTL(Duplication-Transfer-Loss) event mapping tool7 versions - Latest release: about 4 years ago - 1 dependent repositories - 16 downloads last month - 18 stars on GitHub - 1 maintainer
cafeplotter 0.2.0
A tool for plotting CAFE5 gene family expansion/contraction result3 versions - Latest release: about 3 years ago - 52 downloads last month - 38 stars on GitHub - 1 maintainer
babappa 0.8.9
Simulation-trained branch-site selection support from user-supplied codon MSAs and trees6 versions - Latest release: 5 months ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
mkado 0.5.0
Modern Python implementation of the McDonald-Kreitman test toolkit6 versions - Latest release: 6 months ago - 149 downloads last month - 12 stars on GitHub - 1 maintainer
zombi2 0.51.2
Simulating the evolution of species trees, genomes, sequences and traits63 versions - Latest release: 28 days ago - 1.27 thousand downloads last month - 3 stars on GitHub - 1 maintainer
zombi2-core 0.2.0
Compiled Rust engine for ZOMBI2's built-in gene-family model1 version - Latest release: 4 months ago - 15 downloads last month - 3 stars on GitHub - 1 maintainer
mgcplotter 1.0.1
Microbial Genome Circular plotting tool using Circos3 versions - Latest release: over 4 years ago - 1 dependent repositories - 19 downloads last month - 38 stars on GitHub - 1 maintainer
Related Keywords
phylogenetics
7
bioinformatics
7
python
6
comparative-genomics
4
phylogenomics
4
simulation
3
genomics
3
evolution
3
phylogenetic-trees
2
visualization
2
computational-biology
2
birth-death
2
gene families
2
positive-selection
1
rdkit
1
machine-learning
1
pipeline
1
gene-ontology
1
functional-analysis
1
dtl-reconciliation
1
fastdtlmapper
1
signal-processing
1
sequence-alignment
1
pycogent
1
parallel
1
non-stationary
1
maximum-likelihood
1
branch-site
1
codon
1
deep-learning
1
cheminformatics
1
chemistry
1
computational-chemistry
1
computational-science
1
materials-design
1
materials-discoveries
1
materials-science
1
materials-screening
1
molecular-modeling
1
molecular-structures
1
reactions
1
matplotlib
1
mcdonald-kreitman
1
population-genetics
1
selection
1
deep-mutational-scanning
1
protein-evolution
1
predictive
1
Seq-Gen
1
DendroPy
1
MrBayes
1
dna-sequences
1
Bayesian
1
bayesian
1
dendropy
1
mrbayes
1
posterior-predictive
1
seq-gen
1
circos
1
comparative-analysis
1
genomics-visualization
1
microbial-genomics
1
biology
1
statistics
1
phylogeny
1
biological-sequence-analysis
1
biopython
1
data-science
1
markov-chain
1