pypi.org "pathogen" keyword
View the packages on the pypi.org package registry that are tagged with the "pathogen" keyword.
Top 8.1% on pypi.org
33 versions - Latest release: over 7 years ago - 6 dependent repositories - 59 downloads last month - 244 stars on GitHub - 2 maintainers
circlator 1.5.5
circlator: a tool to circularise genome assemblies33 versions - Latest release: over 7 years ago - 6 dependent repositories - 59 downloads last month - 244 stars on GitHub - 2 maintainers
tiptoft 1.0.2
tiptoft: predict which plasmid should be present from uncorrected long read data6 versions - Latest release: over 5 years ago - 1 dependent repositories - 38 downloads last month - 40 stars on GitHub - 1 maintainer
mashpit 0.9.10
A sketch-based surveillance platform12 versions - Latest release: 8 months ago - 1 dependent repositories - 176 downloads last month - 8 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
16 versions - Latest release: over 7 years ago - 5 dependent repositories - 57 downloads last month - 56 stars on GitHub - 2 maintainers
iva 1.0.9
Iterative Virus Assembler16 versions - Latest release: over 7 years ago - 5 dependent repositories - 57 downloads last month - 56 stars on GitHub - 2 maintainers
Top 7.1% on pypi.org
53 versions - Latest release: almost 5 years ago - 7 dependent repositories - 185 downloads last month - 175 stars on GitHub - 2 maintainers
ariba 2.14.6
ARIBA: Antibiotic Resistance Identification By Assembly53 versions - Latest release: almost 5 years ago - 7 dependent repositories - 185 downloads last month - 175 stars on GitHub - 2 maintainers
bfscan 0.0.4
bfscan is designed to detect foodborne pathogens using bloom filter and machine learning4 versions - Latest release: over 2 years ago - 32 downloads last month - 1 maintainer
seroba 1.0.0
SEROBA: Serotyping for illumina reads3 versions - Latest release: over 7 years ago - 1 dependent repositories - 9 downloads last month - 16 stars on GitHub - 1 maintainer
plasmidpredictor 0.1.0
plasmidpredictor: predict which plasmid should be present from uncorrected long read data1 version - Latest release: almost 7 years ago - 1 dependent repositories - 13 downloads last month - 40 stars on GitHub - 1 maintainer
viman 0.0.14
The vim plugin manager based on git and pathogen!14 versions - Latest release: over 6 years ago - 1 dependent repositories - 35 downloads last month - 3 stars on GitHub - 1 maintainer
catastrophy 0.1.0
A fungal trophy classifier based on CAZymes5 versions - Latest release: about 3 years ago - 1 dependent repositories - 30 downloads last month - 3 stars on GitHub - 1 maintainer
oh-my-vim 0.7
Vim plugin manager and Vim related stuff7 versions - Latest release: over 13 years ago - 2 dependent repositories - 29 downloads last month - 152 stars on GitHub - 1 maintainer
albatradis 1.0.1
Comparitive transposon mutagenesis experiment analysis2 versions - Latest release: over 5 years ago - 1 dependent repositories - 32 downloads last month - 9 stars on GitHub - 1 maintainer
uniqmin 1.3.0
An alignment-independent tool for the study of pathogen sequence diversity at any given rank of t...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 6 stars on GitHub - 2 maintainers
pathogena 2.2.1
The command line and Python client for EIT Pathogena.12 versions - Latest release: 28 days ago - 402 downloads last month - 3 maintainers
Top 6.8% on pypi.org
22 versions - Latest release: 4 months ago - 42 dependent repositories - 1.37 thousand downloads last month - 71 stars on GitHub - 2 maintainers
pyfastaq 3.18.0
Script to manipulate FASTA and FASTQ files, plus API for developers.22 versions - Latest release: 4 months ago - 42 dependent repositories - 1.37 thousand downloads last month - 71 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics
10
genomics
8
global-health
8
infectious-diseases
8
research
8
bioinformatics-pipeline
7
next-generation-sequencing
6
sequencing
6
vim
2
uncorrected
2
plasmidfinder
2
plasmid
2
pacbio
2
oxford-nanopore
2
nanopore
2
long-reads
2
kmer
2
microbial-genomics
1
tradis
1
transposon-mutagenesis
1
virus
1
sequence diversity
1
alignment-independent
1
minimal set
1
proteome
1
minimal-set
1
python3
1
sequence-diversity
1
pathogena
1
eit
1
trophic-interactions
1
pathogenomics
1
machine-learning
1
fungi
1
vim-plugin-manager
1
python
1
foodborne
1
science
1
data
1
filter
1
bloom
1
surveillance
1
sourmash
1