pypi.org "long-reads" keyword
View the packages on the pypi.org package registry that are tagged with the "long-reads" keyword.
pepper-polish 0.1.5
RNN based standalone assembly polisher.8 versions - Latest release: over 4 years ago - 1 dependent repositories - 289 downloads last month - 245 stars on GitHub - 1 maintainer
haplotaglr 1.1.10
Phasing individual long reads using known haplotype information.6 versions - Latest release: about 1 month ago - 387 downloads last month - 2 stars on GitHub - 1 maintainer
tiptoft 1.0.2
tiptoft: predict which plasmid should be present from uncorrected long read data6 versions - Latest release: over 5 years ago - 1 dependent repositories - 243 downloads last month - 39 stars on GitHub - 1 maintainer
strkit-rust-ext 0.20.2
A short tandem repeat (STR) genotyping and analysis toolkit for long reads32 versions - Latest release: 17 days ago - 1 dependent package - 6.02 thousand downloads last month - 10 stars on GitHub - 1 maintainer
strkit 0.22.0
A toolkit for analyzing variation in short(ish) tandem repeats.135 versions - Latest release: 23 days ago - 1 dependent repositories - 1.91 thousand downloads last month - 10 stars on GitHub - 1 maintainer
redundans 0.13a5
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.6 versions - Latest release: about 8 years ago - 1 dependent repositories - 169 downloads last month - 107 stars on GitHub - 1 maintainer
lapa 0.0.5
Tools for alternative polyadenylation detection and analysis from diverse data sources (3'seq and...5 versions - Latest release: over 2 years ago - 1 dependent repositories - 102 downloads last month - 29 stars on GitHub - 2 maintainers
plasmidpredictor 0.1.0
plasmidpredictor: predict which plasmid should be present from uncorrected long read data1 version - Latest release: over 6 years ago - 1 dependent repositories - 59 downloads last month - 39 stars on GitHub - 1 maintainer
pyabpoa 1.5.3
pyabpoa: SIMD-based partial order alignment using adaptive band24 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 1.08 thousand downloads last month - 119 stars on GitHub - 1 maintainer
pyscaf 0.12a4
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, an...5 versions - Latest release: about 8 years ago - 1 dependent repositories - 153 downloads last month - 24 stars on GitHub - 1 maintainer
lrphase 1.1.2
Phasing individual long reads using known haplotype information.65 versions - Latest release: about 2 years ago - 1 dependent repositories - 749 downloads last month - 2 stars on GitHub - 3 maintainers
isocon 0.3.3
Pipeline for obtaining non-redundant haplotype specific transcript isoforms using PacBio IsoSeq r...6 versions - Latest release: about 5 years ago - 1 dependent repositories - 146 downloads last month - 15 stars on GitHub - 1 maintainer
strainy 1.4 removed
Metagenomic strain phasing and assmebly using long reads4 versions - Latest release: 8 months ago - 41 stars on GitHub
Related Keywords
bioinformatics
7
genomics
6
nanopore
4
oxford-nanopore
3
assembly
3
long-read-sequencing
3
hifi
3
pathogen
2
plasmid
2
plasmidfinder
2
research
2
uncorrected
2
ngs
2
synteny
2
genome
2
scaffolding
2
paired-end
2
pacbio
2
kmer
2
infectious-diseases
2
global-health
2
bioinformatics-pipeline
2
haplotype
2
phasing
2
gfa-format
1
partial-order-alignment
1
simd
1
reference
1
Iso-Seq
1
consensus-sequences
1
consensus-sequence
1
banded-dp
1
alignment-graph
1
partial-order-graph-alignment
1
multiple-sequence-alignment
1
assembly-polishing
1
CCS
1
PacBio
1
transcript
1
long-read
1
ccs
1
clustering
1
error-correction
1
transcriptome
1
metagenomic-analysis
1
metagenomics
1
sequencing
1
genome-variation
1
pacbio-ccs
1
variant-calling
1
variants
1
heterozygous
1
reduction
1
assembled-contigs
1
closing
1
contigs
1
docker-image
1
fasta
1
gap
1
genome-assembly
1
mate-pairs
1
pipeline
1
polymorphic
1
python
1
long read RNA-seq
1
APA
1
polyadenylation
1
rna-seq
1
transcription
1