Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "samtools" keyword
bamrefine 0.1.1
A small program to mask positions that could result in a PMD artifact from a BAM file using a pre...4 versions - Latest release: 6 months ago - 33 downloads last month - 1 stars on GitHub - 1 maintainer
biobear 0.20.0 💰
A package for working with Bioinformatics data with SQL and Arrow50 versions - Latest release: 28 days ago - 1 dependent package - 5.91 thousand downloads last month - 123 stars on GitHub - 1 maintainer
Top 1.9% on pypi.org
88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 113 thousand downloads last month - 441 stars on GitHub - 1 maintainer
amplicon-coverage-inspector 1.4.20240116
Visualization of coverage for amplicon sequencing3 versions - Latest release: 4 months ago - 30 downloads last month - 2 stars on GitHub - 1 maintainer
sufam 0.4.2
So U Found A Mutation?6 versions - Latest release: over 8 years ago - 4 dependent repositories - 48 downloads last month - 7 stars on GitHub - 1 maintainer
plasmiduncover 1.0.4
Script to obtain plasmid id from WGS data using bowtie2 to map3 versions - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 1 stars on GitHub - 1 maintainer
pileup2sam 0.3.0
Convert pileup to SAM3 versions - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
camembert-bri 0.0.2
Python interface to BRI (Bam Read Index)2 versions - Latest release: over 4 years ago - 58 downloads last month - 0 stars on GitHub - 1 maintainer
bampy 0.1.0
Python implementation of htslib supporting BAM, SAM, and BGZF compression1 version - Latest release: over 6 years ago - 1 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
Related Keywords
python
4
bioinformatics
4
bam
3
htslib
3
python3
2
pileup
2
sam
2
bgzf
2
genomics
2
ancient-dna
1
validation
1
mutation
1
mpileup
1
vcf
1
bowtie2
1
patlas
1
plasmids
1
bri
1
read
1
index
1
bai
1
hts
1
alignment
1
computational-biology
1
sequence-alignment
1
population-genomics
1
pysam
1
arrow
1
biology
1
biopython
1
duckdb
1
polars
1
pyarrow
1
rust-bio
1
dna
1
fasta
1
indexing
1
protein
1
amplicon
1
coverage
1
visualization
1
amplicons
1
depth
1
Python
1