pypi.org "bam" keyword
View the packages on the pypi.org package registry that are tagged with the "bam" keyword.
vcforge 0.1.8
Python library for working with VCF files17 versions - Latest release: 5 months ago - 460 downloads last month - 845 stars on GitHub - 1 maintainer
weldx 0.7.0
Python API for the WelDX file format and standard27 versions - Latest release: 2 days ago - 1 dependent repositories - 1.2 thousand downloads last month - 21 stars on GitHub - 3 maintainers
pydemux 1.0.1
Python package for demultiplexing raw sequencing reads in SAM/BAM format2 versions - Latest release: over 2 years ago - 91 downloads last month - 0 stars on GitHub - 1 maintainer
bamplot 0.9.0
bamplot python package1 version - Latest release: over 8 years ago - 1 dependent repositories - 54 downloads last month - 1 stars on GitHub - 1 maintainer
sufam 0.4.2
So U Found A Mutation?6 versions - Latest release: over 9 years ago - 4 dependent repositories - 215 downloads last month - 7 stars on GitHub - 1 maintainer
bampy 0.1.0
Python implementation of htslib supporting BAM, SAM, and BGZF compression1 version - Latest release: about 7 years ago - 1 dependent repositories - 33 downloads last month - 1 stars on GitHub - 1 maintainer
fast5seek 0.1.1
Get paths for fast5 files contained in BAM, SAM, or fastq.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 71 downloads last month - 12 stars on GitHub - 1 maintainer
mop-bam 0.0.6
Get well-mapped regions from bams13 versions - Latest release: over 3 years ago - 1 dependent repositories - 235 downloads last month - 22 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
27 versions - Latest release: 6 months ago - 1 dependent repositories - 655 downloads last month - 521 stars on GitHub - 1 maintainer
biocode 0.12.0
Bioinformatics code libraries and scripts27 versions - Latest release: 6 months ago - 1 dependent repositories - 655 downloads last month - 521 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: over 1 year ago - 209 downloads last month - 1 maintainer
snoopy 0.4.7
Browser based quality control tool to expedite reviewing predicted variants in next generation se...7 versions - Latest release: over 8 years ago - 3 dependent repositories - 143 downloads last month - 9 stars on GitHub - 1 maintainer
compas-model 0.7.0
This package provides a universal model datastructure for design, analysis, fabrication, and cons...12 versions - Latest release: about 1 month ago - 1.97 thousand downloads last month - 3 stars on GitHub - 1 maintainer
anvio 2.4.0
An interactive analysis and visualization platform for 'omics data. See https://merenlab.org/proj...29 versions - Latest release: over 7 years ago - 2 dependent repositories - 688 downloads last month - 1 maintainer
rustbam 0.2.0
A Rust-based BAM depth calculator for Python.7 versions - Latest release: 2 months ago - 159 downloads last month - 1 maintainer
Top 9.6% on pypi.org
1 version - Latest release: over 1 year ago - 2 dependent repositories - 1 maintainer
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam1 version - Latest release: over 1 year ago - 2 dependent repositories - 1 maintainer
fuc 0.38.0 💰
Frequently used commands in bioinformatics39 versions - Latest release: 10 months ago - 1 dependent package - 2 dependent repositories - 3.23 thousand downloads last month - 48 stars on GitHub - 1 maintainer
lapels 1.1.1
Lapels - A remapper and annotator of in silico (pseudo) genome alignments10 versions - Latest release: almost 9 years ago - 2 dependent repositories - 190 downloads last month - 5 stars on GitHub - 1 maintainer
pymasc 0.3.2
Python implementation to calc mappability-sensitive cross-correlation for fragment length estimat...12 versions - Latest release: over 5 years ago - 1 dependent repositories - 326 downloads last month - 2 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
32 versions - Latest release: about 1 month ago - 3 dependent repositories - 683 downloads last month - 47 stars on GitHub - 1 maintainer
paleomix 1.3.9
Bioinformatics pipelines for HTS data32 versions - Latest release: about 1 month ago - 3 dependent repositories - 683 downloads last month - 47 stars on GitHub - 1 maintainer
mbf-bam 0.6.0
Helpers to deal with BAM files9 versions - Latest release: 6 months ago - 1 dependent repositories - 367 downloads last month - 1 maintainer
bamread 0.0.17
Read bam files quickly into dataframes in Python16 versions - Latest release: about 1 month ago - 5 dependent packages - 2 dependent repositories - 1.05 thousand downloads last month - 13 stars on GitHub - 1 maintainer
coalispr 0.7.8
Small RNA-Seq analysis starting from bedgraph files4 versions - Latest release: 6 months ago - 63 downloads last month - 1 maintainer
ngsderive 4.0.0
Forensic analysis tool useful in backwards computing information from next-generation sequencing ...24 versions - Latest release: over 1 year ago - 1 dependent repositories - 389 downloads last month - 11 stars on GitHub - 1 maintainer
bamr 0.2.0
bamr is a lightweight python library for reading bam files3 versions - Latest release: over 3 years ago - 73 downloads last month - 0 stars on GitHub - 1 maintainer
vafator 2.2.0
Annotate a VCF file with AF, AD and DP from tumor and normal BAMs23 versions - Latest release: about 2 years ago - 1 dependent repositories - 268 downloads last month - 8 stars on GitHub - 1 maintainer
pileup2sam 0.3.0
Convert pileup to SAM3 versions - Latest release: over 5 years ago - 1 dependent repositories - 76 downloads last month - 0 stars on GitHub - 1 maintainer
bam2fasta 1.0.8 removed
tool for converting a bam file to fastas8 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 52 downloads last month - 8 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
12
sam
9
vcf
5
fastq
4
fasta
3
cram
3
htslib
3
ngs
3
pileup
3
samtools
3
genomics
3
python
3
sequencing
2
hts
2
pysam
2
pipeline
2
visualization
2
genetics
2
bed
2
variants
2
bigwig
1
chip-seq
1
analysis
1
algorithm
1
ChIP-Seq
1
cross-correlation
1
NGS
1
mod
1
position
1
remap
1
lapels
1
maf
1
gtf
1
gff
1
cli
1
api
1
snapshot
1
headless
1
visualize
1
files
1
sequences
1
kmers
1
fastas
1
genomic
1
10x
1
annotation
1
library
1
light-weight
1
reading
1
workflow-engine
1
workflow
1
strandedness-inference
1
strandedness
1
next-generation-sequencing
1
gene-model
1
computational-biology
1
RNA
1
bedgraph
1
pyCRAC
1
pandas
1
matplotlib
1
high troughput sequencing
1
phylogeny
1
quality-control
1
pypi
1
mappability
1
cython
1
ont
1
nanopore
1
fast5
1
fast5seek
1
bgzf
1
bai
1
mpileup
1
mutation
1
validation
1
Python
1
plotting
1
SEQ
1
demultiplexing
1
squencing
1
welding-community
1
opendata
1
iso-9692-1
1
data-format
1
asdf
1
advanced-scientific-data-format
1
weldx
1
welding
1
bcf
1
alignment
1
igv
1
parallel
1
rust
1
SNV
1
SNP
1
MBL
1
shotgun
1
microbiology
1
metatranscriptomics
1