Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "PDB" keyword
pymolpy3 0.1.2
A PyMOL wrapper in Python3.1 version - Latest release: over 3 years ago - 1 dependent repositories - 318 downloads last month - 7 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
48 versions - Latest release: 3 months ago - 44 dependent packages - 37 dependent repositories - 17.2 thousand downloads last month - 199 stars on GitHub - 1 maintainer
gemmi 0.6.5
library for structural biology48 versions - Latest release: 3 months ago - 44 dependent packages - 37 dependent repositories - 17.2 thousand downloads last month - 199 stars on GitHub - 1 maintainer
pdbeccdutils 0.8.4
Toolkit to deal with wwPDB chemical components definitions for small molecules.15 versions - Latest release: 7 months ago - 1 dependent repositories - 353 downloads last month - 30 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
73 versions - Latest release: about 1 year ago - 20 dependent packages - 87 dependent repositories - 5.97 thousand downloads last month - 273 stars on GitHub - 1 maintainer
bioservices 1.11.2
Access to Biological Web Services from Python73 versions - Latest release: about 1 year ago - 20 dependent packages - 87 dependent repositories - 5.97 thousand downloads last month - 273 stars on GitHub - 1 maintainer
pdb-numpy 0.0.2
Pdb_Numpy is a python library allowing simple operations on pdb coor files.2 versions - Latest release: 6 months ago - 1 dependent package - 42 downloads last month - 7 stars on GitHub - 1 maintainer
Top 5.4% on pypi.org
16 versions - Latest release: over 1 year ago - 7 dependent packages - 12 dependent repositories - 5.1 thousand downloads last month - 30 stars on GitHub - 5 maintainers
diffpy.structure 3.1.0
Crystal structure container and parsers for structure formats.16 versions - Latest release: over 1 year ago - 7 dependent packages - 12 dependent repositories - 5.1 thousand downloads last month - 30 stars on GitHub - 5 maintainers
Top 2.3% on pypi.org
65 versions - Latest release: 9 months ago - 8 dependent packages - 30 dependent repositories - 6.99 thousand downloads last month - 388 stars on GitHub - 1 maintainer
prody 2.4.1
A Python Package for Protein Dynamics Analysis65 versions - Latest release: 9 months ago - 8 dependent packages - 30 dependent repositories - 6.99 thousand downloads last month - 388 stars on GitHub - 1 maintainer
Top 4.9% on pypi.org
7 versions - Latest release: about 4 years ago - 4 dependent packages - 6 dependent repositories - 1.49 thousand downloads last month - 29 stars on GitHub - 2 maintainers
pdbecif 1.4.2
A lightweight pure python package for reading, writing and manipulating mmCIF files distributed b...7 versions - Latest release: about 4 years ago - 4 dependent packages - 6 dependent repositories - 1.49 thousand downloads last month - 29 stars on GitHub - 2 maintainers
pdbpy 0.0.1
Pure python implementation of parsing PDB debug information files1 version - Latest release: 24 days ago - 0 stars on GitHub - 1 maintainer
pdbviewer 0.1.2
Automatically retrieve a PDB file for a given RCSB PDB id and visualize its 3D structure.3 versions - Latest release: 25 days ago - 192 downloads last month - 0 stars on GitHub - 1 maintainer
protkit 0.3.0
A unified toolkit for structural protein engineering.8 versions - Latest release: 15 days ago - 189 downloads last month - 28 stars on GitHub - 1 maintainer
prauto 0.214
PRauto is a package for collecting and preprocessing protein and ligand data.14 versions - Latest release: 12 months ago - 37 downloads last month - 0 stars on GitHub - 1 maintainer
pdbe-arpeggio 1.4.4
Arpeggio calculates interatomic contacts based on the rules defined in CREDO.2 versions - Latest release: 4 months ago - 262 downloads last month - 61 stars on GitHub - 1 maintainer
proteinflow 2.8.0
Versatile pipeline for processing protein structure data for deep learning applications.45 versions - Latest release: 4 months ago - 259 downloads last month - 165 stars on GitHub - 1 maintainer
structuralia 0.912
A toolset to work with proteins21 versions - Latest release: almost 6 years ago - 1 dependent repositories - 121 downloads last month - 0 stars on GitHub - 1 maintainer
sblu 0.7.2
Library for munging data files from ClusPro/FTMap/etc.28 versions - Latest release: over 4 years ago - 2 dependent repositories - 340 downloads last month - 2 maintainers
pyrotein 0.1.4
A tiny package for structure analysis of macromolecules.5 versions - Latest release: about 3 years ago - 1 dependent repositories - 44 downloads last month - 3 stars on GitHub - 1 maintainer
protchoir 1.2.25
A Modeller-based pipeline to generate homo-oligomers.43 versions - Latest release: 11 months ago - 1 dependent repositories - 203 downloads last month - 4 stars on GitHub - 1 maintainer
pdb-eda 2.7.1
Methods for analyzing electron density maps in wwPDB14 versions - Latest release: 8 months ago - 1 dependent repositories - 92 downloads last month - 12 stars on GitHub - 2 maintainers
palmdb 1.8.1
Pure Python library to read/write/modify Palm PDB and PRC format databases.11 versions - Latest release: 9 months ago - 1 dependent repositories - 43 downloads last month - 1 maintainer
mmtfpyspark 0.3.6
Methods for parallel and distributed analysis and mining of the Protein Data Bank using MMTF and ...10 versions - Latest release: over 5 years ago - 1 dependent repositories - 76 downloads last month - 67 stars on GitHub - 2 maintainers
fretraj 0.2.10
Predicting FRET with accessible-contact volumes34 versions - Latest release: 7 months ago - 1 dependent repositories - 739 downloads last month - 8 stars on GitHub - 1 maintainer
fretlabel 0.2.0
PyMOL plugin to interactively label nucleic acids with fluorophores in silico3 versions - Latest release: over 2 years ago - 1 dependent repositories - 34 downloads last month - 4 stars on GitHub - 1 maintainer
finley 0.1-r2701
Command line analyzer for large molecular dynamics trajectories with DCD support.6 versions - Latest release: about 9 years ago - 2 dependent repositories - 22 downloads last month - 1 maintainer
annotate-lineinfo 0.1
Annotate IDA with source and line number information from a PDB1 version - Latest release: almost 5 years ago - 1 dependent repositories - 16 downloads last month - 10 stars on GitHub - 1 maintainer
Top 5.5% on pypi.org
31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
atomium 1.0.11 💰
A molecular modeller and file parser.31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
pdbsearch 0.4.0 💰
A library for searching for PDB structures using the official APIs.4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
protein
10
bioinformatics
6
CIF
4
biology
3
structure
3
mmCIF
3
structural-biology
3
protein-structure
3
FRET
2
single-molecule
2
molecular dynamics
2
dynamics
2
antibody
2
dataset
2
protein-data-bank
2
python
2
structure biology
2
chemistry
2
proteins
2
biochemistry
2
molecules
2
MMCIF
2
multimer
1
oligomers
1
oligomerization
1
ligand
1
interactions
1
CREDO
1
atomic-interactions
1
cheminformatics
1
structural-bioinformatics
1
deep learning
1
deep-learning
1
protein-design
1
analysis
1
cluspro
1
UniChem
1
Protein
1
3D structure
1
Bioinformatics
1
protein engineering
1
structural biology
1
computational biology
1
sequence
1
amino acid
1
residue
1
antibody engineering
1
cdr
1
FASTA
1
sdf
1
Automation
1
arpeggio
1
contacts
1
electron densiy map
1
AMBERDYES
1
dye
1
fluorophore
1
forcefield
1
fret
1
gromacs
1
labeling
1
simulation
1
DCD
1
PSF
1
IDA
1
IDAPython
1
ida
1
idapython
1
pdb
1
MMTF
1
api-wrapper
1
rcsb
1
PRC
1
Palm
1
database
1
mmtf
1
spark
1
pyspark
1
apache-spark
1
big-data
1
binder
1
jupyter
1
jupyter-notebook
1
machine-learning
1
protein-ligand-interactions
1
protein-protein-interaction
1
protein-sequences
1
scientific-computing
1
structure prediction
1
fluorescence labeling
1
Kegg
1
KEGG
1
BioModels
1
EUtils
1
UniProt
1
PICR
1
ArrayExpress
1
MUSCLE
1
QuickGO
1
PSICQUIC
1