Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "k-mer" keyword
pyjellyfish 1.2.0
A python wrapper around DNA k-kmer counter Jellfish4 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 28 downloads last month - 3 stars on GitHub - 1 maintainer
kmerdb 0.8.2 💰
Yet another corretion to the 'yet another correction to just a k-mer counter...'38 versions - Latest release: 15 days ago - 1 dependent repositories - 255 downloads last month - 12 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
23 versions - Latest release: about 3 years ago - 5 dependent repositories - 194 downloads last month - 76 stars on GitHub - 2 maintainers
poppunk 2.4.0
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)23 versions - Latest release: about 3 years ago - 5 dependent repositories - 194 downloads last month - 76 stars on GitHub - 2 maintainers
unitig-caller 1.2.0
unitig-caller: wrapper around mantis to detect presence of sequence elements3 versions - Latest release: about 3 years ago - 1 dependent repositories - 24 downloads last month - 16 stars on GitHub - 1 maintainer
pykmindex 0.2.2
Python API to query kmindex server.3 versions - Latest release: about 1 year ago - 29 downloads last month - 38 stars on GitHub - 1 maintainer
km-walk 2.2.1
A software for RNA-seq investigation using k-mer decomposition3 versions - Latest release: 10 months ago - 1 dependent repositories - 20 downloads last month - 10 stars on GitHub - 1 maintainer
yack 0.1.2
Yet another k-mer counter2 versions - Latest release: over 6 years ago - 2 dependent repositories - 25 downloads last month - 1 stars on GitHub - 1 maintainer
pp-sketchlib 2.1.1
Library of sketching functions used by PopPUNK6 versions - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 28 stars on GitHub - 2 maintainers
fast-ska 0.9.3
A fast Cython implementation of the "Streaming K-mer Assignment" algorithm initially described in...2 versions - Latest release: over 7 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
decom 0.0.32
decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral sa...31 versions - Latest release: 10 months ago - 1 dependent repositories - 304 downloads last month - 4 stars on GitHub - 1 maintainer
virstrain 1.17
An RNA/DNA virus strain-level identification tool for short reads.7 versions - Latest release: 3 months ago - 1 dependent repositories - 78 downloads last month - 18 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
3
bacteria
3
kmer
2
k-mer-counting
2
genomics
2
population-genetics
2
sequencing
1
kmer-counting
1
rna
1
rbns
1
statistics
1
biology
1
ancient-dna
1
calculus
1
contamination
1
matrix
1
metagenomics
1
reference-database
1
strain
1
virus
1
variant
1
RNA-seq
1
kmindex
1
indexing
1
unitig
1
gwas
1
sketching
1
python-cli
1
k-mer-hashing
1
k-mer-frequency
1
bgzf
1
fasta
1
fastq
1
DNA
1