Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "alignment" keyword
nwalign 0.3.1
Needleman-Wunsch global sequence alignment7 versions - Latest release: over 14 years ago - 8 dependent repositories - 97 downloads last month - 2 maintainers
alignlib-lite 0.2.3
alignlib-lite - simple wrapper around alignlib C++ library for sequence alignment5 versions - Latest release: almost 10 years ago - 4 dependent repositories - 28 downloads last month - 1 maintainer
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 51 downloads last month - 2 maintainers
metameta 0.0.0.66
Toolkit for analyzing meta-transcriptome/metagenome mapping data63 versions - Latest release: over 7 years ago - 2 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
15 versions - Latest release: about 7 years ago - 2 dependent packages - 18 dependent repositories - 2.49 thousand downloads last month - 2,375 stars on GitHub - 1 maintainer
aeneas 1.7.3.0
aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka ...15 versions - Latest release: about 7 years ago - 2 dependent packages - 18 dependent repositories - 2.49 thousand downloads last month - 2,375 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
stringdist 1.0.9
This package provides the stringdist module, which includes several functions for calculating str...4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
matchtools 0.1.2
A set of tools for data matching and manipulation3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 5 stars on GitHub - 2 maintainers
pyprot 0.1-alpha
Python Proteins1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 2 maintainers
seqanpy 0.2
Fast pairwise sequence alignment using SeqAn1 version - Latest release: almost 7 years ago - 1 dependent repositories - 11 downloads last month - 13 stars on GitHub - 2 maintainers
seqpipe 0.0.7
Sequencing pipeline5 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 2 maintainers
stxmalign 0.0.10
Pixel Alignment of STXM images.4 versions - Latest release: over 6 years ago - 1 dependent repositories - 36 downloads last month - 61 stars on GitHub - 2 maintainers
stxmproc 0.0.1
Pixel Alignment and Normalization of STXM images.1 version - Latest release: over 6 years ago - 1 dependent repositories - 21 downloads last month - 61 stars on GitHub - 2 maintainers
seq-tools 1.0.10
Python tools for working with biological sequence data5 versions - Latest release: over 6 years ago - 1 dependent repositories - 86 downloads last month - 1 stars on GitHub - 2 maintainers
alignqc 2.0.5
Python and R based tool for assessing the quality of alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 45 stars on GitHub - 1 maintainer
pyali 0.1.1
A package for merging alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
enpc-aligner 1.0.5
Library of alignment of translated texts in differents languages6 versions - Latest release: about 6 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 2 maintainers
samsift 0.2.5
SAMsift - sift your alignments6 versions - Latest release: about 6 years ago - 1 dependent repositories - 55 downloads last month - 21 stars on GitHub - 2 maintainers
search-kwic 0.2
Tool for KWIC representation of paralleltext. Find a word in the parallel text corresponding to q...1 version - Latest release: almost 6 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
sam-alignment-reconstructor 0.0.5
SAM Alignment Reconstructor3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 4 maintainers
msa-cigars 0.0.1
To return CIGAR strings of a multiple sequences alignment1 version - Latest release: over 5 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
19 versions - Latest release: over 5 years ago - 4 dependent repositories - 779 downloads last month - 100 stars on GitHub - 1 maintainer
asr_evaluation 2.0.4
Evaluating ASR (automatic speech recognition) hypotheses, i.e. computing word error rate.19 versions - Latest release: over 5 years ago - 4 dependent repositories - 779 downloads last month - 100 stars on GitHub - 1 maintainer
blockrs 0.6.1
Encode and decode alignment blocks7 versions - Latest release: over 5 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 2 maintainers
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python17 versions - Latest release: about 5 years ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 1 maintainer
protparcon 3.1
ProtParCon - A framework for framework for processing molecular data and identifying parallel and...4 versions - Latest release: about 5 years ago - 1 dependent repositories - 30 downloads last month - 4 stars on GitHub - 2 maintainers
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas6 versions - Latest release: almost 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 2 maintainers
aligned-treemap 1.0.5
Pure Python implementation of treemap, aligned_treemap, and squarify3 versions - Latest release: over 4 years ago - 44 downloads last month - 2 stars on GitHub - 1 maintainer
scheduled-tasks-reader 0.1.1 💰
A program to various information of scheduled tasks.2 versions - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 41,864 stars on GitHub - 2 maintainers
reveal 0.2.2
Graph based multi genome aligner2 versions - Latest release: over 4 years ago - 2 dependent repositories - 46 downloads last month - 43 stars on GitHub - 2 maintainers
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data8 versions - Latest release: over 4 years ago - 1 dependent repositories - 88 downloads last month - 12 stars on GitHub - 1 maintainer
pyclaragenomics-cuda-10-1 0.4.3
NVIDIA genomics python libraries and utiliites2 versions - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 273 stars on GitHub - 2 maintainers
pyclaragenomics-cuda-10-0 0.4.3
NVIDIA genomics python libraries and utiliites2 versions - Latest release: over 4 years ago - 1 dependent repositories - 6 downloads last month - 275 stars on GitHub - 2 maintainers
subsume 0.2.16 💰
Language-agnostic synchronization of subtitles with video via speech detection.1 version - Latest release: over 4 years ago - 1 dependent repositories - 5 downloads last month - 6,478 stars on GitHub - 2 maintainers
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 2 maintainers
docoskin 0.1.0
"Onion-skin" visual differences between a reference document image and a scanned copy1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 2 maintainers
privat24-business-python-sdk 0.0.1 💰
Privat24 for Business Python SDK1 version - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 41,864 stars on GitHub - 1 maintainer
sciencebeam-alignment 0.0.5
ScienceBeam Alignment5 versions - Latest release: about 4 years ago - 3 dependent repositories - 33 downloads last month - 0 stars on GitHub - 4 maintainers
ffsubs 0.3.3 💰
Language-agnostic synchronization of subtitles with video via speech detection, and other subtitl...1 version - Latest release: about 4 years ago - 1 dependent repositories - 11 downloads last month - 6,513 stars on GitHub - 2 maintainers
py-goicp 0.0.4
GO-ICP compiled using Cython to use in python4 versions - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 113 stars on GitHub - 2 maintainers
pandas-mpmkp 1.0.9 💰
Powerful data structures for data analysis, time series, and statistics2 versions - Latest release: about 4 years ago - 1 dependent repositories - 33 downloads last month - 41,864 stars on GitHub - 1 maintainer
arbow 0.6.0
Cultivate your MSA to get better trees15 versions - Latest release: about 4 years ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
genomeworks 0.0.0
NVIDIA genomics python libraries and utilities1 version - Latest release: almost 4 years ago - 1 dependent repositories - 9 downloads last month - 276 stars on GitHub - 2 maintainers
softalignments 1.0.4
Neural macine translation soft alignment visualisations for web and command line1 version - Latest release: almost 4 years ago - 1 dependent repositories - 17 downloads last month - 72 stars on GitHub - 2 maintainers
align1d 2.3.0
A small package for 1d aligment in cuda5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 2 maintainers
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites150 versions - Latest release: over 3 years ago - 1 dependent repositories - 865 downloads last month - 273 stars on GitHub - 2 maintainers
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 2 maintainers
simple-face-alignment 0.0.2
a simple implmentation for face align2 versions - Latest release: over 3 years ago - 1 dependent repositories - 16 downloads last month - 1 stars on GitHub - 2 maintainers
pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files5 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 31 stars on GitHub - 2 maintainers
textjustify 0.0.5
A text justify package5 versions - Latest release: over 3 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 2 maintainers
malign 0.3.2
Library for multiple asymmetric alignments on different alphabets6 versions - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
genomeworks-cuda-10-0 2021.2.0
NVIDIA genomics python libraries and utiliites221 versions - Latest release: about 3 years ago - 1 dependent repositories - 2 thousand downloads last month - 276 stars on GitHub - 2 maintainers
viro-seq-utils 1.3.4
Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory.3 versions - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 2 maintainers
Top 9.8% on pypi.org
104 versions - Latest release: almost 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites104 versions - Latest release: almost 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites224 versions - Latest release: almost 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 479 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 2 maintainers
pygas 1.0.4
python Guide aligned Sequences2 versions - Latest release: over 2 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
hladownload 0.0.5
Python command line program and module for retrieving HLA alleles, frequencies and eplets.7 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
ultra-bioinformatics 0.0.4
Splice aligner of long transcriptomic reads to genome.14 versions - Latest release: over 2 years ago - 2 dependent repositories - 99 downloads last month - 56 stars on GitHub - 2 maintainers
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 2 maintainers
astred 0.9.7
A collection of syntactic metrics to calculate (dis)similarities between source and target senten...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 117 downloads last month - 17 stars on GitHub - 1 maintainer
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.21 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 2 maintainers
tssv 1.1.2
Targeted characterisation of short structural variation.24 versions - Latest release: over 2 years ago - 2 dependent repositories - 367 downloads last month - 2 stars on GitHub - 2 maintainers
metalogo 1.1.1
MetaLogo is a heterogeneity-aware sequence logo generator and aligner5 versions - Latest release: over 2 years ago - 2 dependent repositories - 24 downloads last month - 17 stars on GitHub - 2 maintainers
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
text-alignment-tool 0.2.15
A tool for performing complex text alignment processes.18 versions - Latest release: over 2 years ago - 1 dependent repositories - 156 downloads last month - 1 stars on GitLab.com - 1 maintainer
caretta 0.1.2
Fast multiple protein structure alignment3 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 24 stars on GitHub - 2 maintainers
pyaliner 0.1.2
A library for comparing sequential data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
align-benchmark 0.1.1
Benchmark tests for dualtext alignment2 versions - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
dmpfold 2.0
Protein structure prediction with the DMPfold2 method2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers
spruceup 2022.2.4
A module for lexible identification, visualization, and removal of outliers from large multiple s...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 76 downloads last month - 17 stars on GitHub - 2 maintainers
linmdtw 0.1.7
A linear memory, exact, parallelizable algorithm for dynamic time warping in arbitrary Euclidean ...7 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 50 stars on GitHub - 2 maintainers
mvirs 1.1.1
mVIRs: Localisation of inducible prophages using NGS data1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 12 stars on GitHub - 2 maintainers
bialign 0.3
Bialignment of RNAs and proteins7 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 2 maintainers
rich-msa 0.1.0
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.1 version - Latest release: almost 2 years ago - 1 dependent repositories - 33 downloads last month - 75 stars on GitHub - 2 maintainers
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
onto-merger 0.1.0
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes,(i.e. ontolog...1 version - Latest release: almost 2 years ago - 12 downloads last month - 89 stars on GitHub - 2 maintainers
columnify 1.0.1
To create text-based columnized (ls-like) content suitable for console output from a list of strings5 versions - Latest release: almost 2 years ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
pandassng 2.1.0 removed 💰
This package is used for security research and demonstrations. It might contain dangerous code sn...1 version - Latest release: over 1 year ago - 35,782 stars on GitHub
alicebob 6.6.6 removed 💰
This package is used for security research and demonstrations. It might contain dangerous code sn...1 version - Latest release: over 1 year ago - 35,782 stars on GitHub
timething 0.0.27
Aligning text transcripts with their audio recordings.29 versions - Latest release: over 1 year ago - 1 dependent repositories - 178 downloads last month - 64 stars on GitHub - 2 maintainers
recan 0.1.5
recan: recombination analysis tool5 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 9 stars on GitHub - 2 maintainers
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
pyicoshift 0.0.3
Python 3 Version of icoshift1 version - Latest release: over 1 year ago - 17 downloads last month - 3 stars on GitHub - 1 maintainer
dnalignment 0.0.6
dna sequence alignment5 versions - Latest release: over 1 year ago - 21 downloads last month - 1 maintainer
mssw 0.1.5
Modern Cpp binding for complete-striped-smith-watern-library5 versions - Latest release: over 1 year ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy1 version - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 19 stars on GitHub - 2 maintainers
phonechars 0.1
Extract phonological phylogenetic characters from aligned data1 version - Latest release: over 1 year ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
nmalign 0.0.3
forced alignment of lists of string by fuzzy string matching3 versions - Latest release: over 1 year ago - 1 dependent repositories - 14 downloads last month - 6 stars on GitHub - 1 maintainer
pydeas 1.0.2 💰
A simple db package5 versions - Latest release: over 1 year ago - 17 downloads last month - 41,864 stars on GitHub - 2 maintainers
in-memory-table 1.0.0 💰
In memory indexed data1 version - Latest release: over 1 year ago - 26 downloads last month - 41,864 stars on GitHub - 1 maintainer
aligner-pytorch 0.0.19 💰
Aligner - PyTorch13 versions - Latest release: over 1 year ago - 75 downloads last month - 1,664 stars on GitHub - 2 maintainers
pyalign 0.4.4
Fast and Versatile Alignments for Python16 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 951 downloads last month - 43 stars on GitHub - 2 maintainers
scikit-fda-sim 0.7.1
Functional Data Analysis Python package.1 version - Latest release: over 1 year ago - 19 downloads last month - 272 stars on GitHub - 2 maintainers
elastic-tables 0.0.3
Format text using elastic tabstops3 versions - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
dtwalign 0.1.1
Comprehensive DTW package which enables partial mathing and has various constraint options7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
Top 2.6% on pypi.org
9 versions - Latest release: over 1 year ago - 8 dependent packages - 25 dependent repositories - 16.3 thousand downloads last month - 457 stars on GitHub - 1 maintainer
rmsd 1.5.1
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB...9 versions - Latest release: over 1 year ago - 8 dependent packages - 25 dependent repositories - 16.3 thousand downloads last month - 457 stars on GitHub - 1 maintainer
baplotter 1.0.0b1 removed
Plotting of band gap alignments for a list of materials. The user can specify the material names,...3 versions - Latest release: over 1 year ago - 1 maintainer
starsalign 1.1.0
A package for aligning and comparing astronomical images15 versions - Latest release: over 1 year ago - 97 downloads last month - 4 stars on GitHub - 1 maintainer
minimappers2 0.1.3
A Python wrapper for minimap2-rs4 versions - Latest release: over 1 year ago - 8 downloads last month - 47 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
12 versions - Latest release: about 1 year ago - 9 dependent packages - 21 dependent repositories - 30.5 thousand downloads last month - 100 stars on GitHub - 1 maintainer
edit-distance 1.0.6
Computing edit distance on arbitrary Python sequences.12 versions - Latest release: about 1 year ago - 9 dependent packages - 21 dependent repositories - 30.5 thousand downloads last month - 100 stars on GitHub - 1 maintainer
Related Keywords
python
46
bioinformatics
41
genomics
19
sequence
17
data-analysis
15
data-science
15
pandas
15
flexible
14
mapping
14
poa
11
cuda
10
gpu
10
nvidia
10
partial-order-alignment
10
python-api
10
protein
8
registration
8
multiple-sequence-alignment
7
visualization
7
deep-learning
7
sequence-alignment
6
speech
6
audio
6
nlp
5
align
5
text
5
machine-learning
5
synchronization
5
subtitles
5
pytorch
5
graph
5
dna
5
python3
5
phylogenetics
5
levenshtein
4
string
4
NGS
4
srt
4
comparison
4
voice-activity-detection
4
forced-alignment
4
edit-distance
4
captions
4
sync
4
needleman-wunsch
4
ffmpeg
4
biology
4
llm
4
similarity
3
fast-fourier-transform
3
fft
3
speech-detection
3
srt-subtitles
3
string-alignment
3
subtitle
3
vad
3
video
3
word
3
msa
3
vlc
3
vlc-media-player
3
clustering
3
data
3
deep learning
3
face
3
minimap2
3
metagenomics
3
sequencing
3
parsing
3
neuroscience
3
python-library
3
ai
3
dtw
3
caption
3
opencv
2
left
2
format
2
epsg
2
centre
2
trajectory-analysis
2
center
2
parallel-corpus
2
multiple
2
machine-translation
2
genome
2
library
2
assembly
2
translation
2
command-line
2
leverarm
2
evaluation
2
compare
2
line
2
right
2
proteomics
2
trajectory
2
metrics
2
python-bindings
2
cython-library
2
phoneme
2