Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "genbank" keyword

genmine 1.0.13
GenBank data miner for fungal taxonomists
21 versions - Latest release: 7 days ago - 342 downloads last month - 7 stars on GitHub - 1 maintainer
gbcrawler 0.3.0
Complete GenBank parser
1 version - Latest release: almost 4 years ago - 1 dependent repositories - 9 downloads last month - 1 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
pydna 5.2.0
Representing double stranded DNA and functions for simulating cloning and homologous recombinatio...
112 versions - Latest release: over 1 year ago - 7 dependent packages - 15 dependent repositories - 7.41 thousand downloads last month - 155 stars on GitHub - 2 maintainers
pygenomeviz 0.4.4
A genome visualization python package for comparative genomics
24 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 633 downloads last month - 232 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
ncbi-genome-download 0.3.3
Download genome files from the NCBI FTP server.
25 versions - Latest release: 10 months ago - 3 dependent packages - 8 dependent repositories - 851 downloads last month - 886 stars on GitHub - 2 maintainers
cazy-webscraper 2.3.0
A tool to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly in...
31 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 226 downloads last month - 13 stars on GitHub - 2 maintainers
rsnapsim 0.0.58
A package for mRNA sequence translation stochastic simulations
48 versions - Latest release: almost 2 years ago - 1 dependent repositories - 408 downloads last month - 562 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
dna-features-viewer 3.1.3
Plot features from DNA sequences (e.g. Genbank) with Python
30 versions - Latest release: 7 months ago - 9 dependent packages - 19 dependent repositories - 2.41 thousand downloads last month - 546 stars on GitHub - 1 maintainer
ogu 1.52
Organelle Genome Utilities
2 versions - Latest release: 29 days ago - 68 downloads last month - 20 stars on GitHub - 1 maintainer
genbank-to 0.42
Convert GenBank format files to a swath of other formats
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 33 downloads last month - 11 stars on GitHub - 1 maintainer
sumac 2.0
SUMAC: Supermatrix Constructor
9 versions - Latest release: 9 months ago - 2 dependent repositories - 42 downloads last month - 8 stars on GitHub - 1 maintainer
nebgb 0.1.2
Genbank file parser.
7 versions - Latest release: almost 15 years ago - 2 dependent repositories - 8 downloads last month - 1 maintainer
multisub 1.0
SARS-CoV-2 data converter between Genbank/GISAID/ENA formats
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 6 downloads last month - 34 stars on GitHub - 1 maintainer
genbank-download 0.5
a small script to download nucleotide sequences from genbank using an accession number.
1 version - Latest release: over 14 years ago - 2 dependent repositories - 12 downloads last month - 1 maintainer
gbkviz 1.2.0
Simple web application to visualize and compare genomes in Genbank files
12 versions - Latest release: about 2 years ago - 1 dependent repositories - 125 downloads last month - 19 stars on GitHub - 1 maintainer
dgparse 0.0.1
Parser library for several biological data file formats
1 version - Latest release: 9 months ago - 2 dependent repositories - 1 maintainer
barcodefinder 0.9.49
All-in-one solution for discovering novel DNA barcode
23 versions - Latest release: about 3 years ago - 1 dependent repositories - 149 downloads last month - 20 stars on GitHub - 1 maintainer
biopython.convert 1.3.3
Interconvert various file formats supported by biopython. Supports querying records with JMESPath.
9 versions - Latest release: almost 2 years ago - 39 downloads last month - 3 stars on GitHub - 1 maintainer
gb-io 0.3.3
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
9 versions - Latest release: about 1 month ago - 1 dependent repositories - 2.08 thousand downloads last month - 12 stars on GitHub - 1 maintainer
gbgb 0.1.0
Goodbye, GenBank is a package for use with Biopython that gives feature annotations from GenBank ...
2 versions - Latest release: about 8 years ago - 3 dependent repositories - 9 downloads last month - 14 stars on GitHub - 2 maintainers
makura 1.2.0
NCBI Genome downloader
4 versions - Latest release: about 1 year ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics 12 genomics 6 python 6 visualization 5 fasta 5 biopython 4 ncbi 3 comparative-genomics 2 parser 2 genomics-visualization 2 gff 2 gff3 2 microbial-genomics 2 microbiology 2 dna-visualization 2 molecular-biology 2 synthetic-biology 2 biology 2 taxonomy 2 gisaid-upload 1 gisaid-uploader 1 gisaid-xls 1 meta-data 1 ncbi-ftp 1 gisaid-format 1 ena 1 supermatrix 1 phylogenetics 1 genome 1 organelle 1 Bioinformatics 1 analysis 1 organelle genome 1 mitochondria 1 plastid 1 Matplotlib 1 refseq 1 genome-assembly 1 sequence-ontology 1 record 1 sequence 1 fastq 1 filter 1 embl 1 convert 1 primer-design 1 dna-barcode 1 deskgen 1 snapgene 1 webapp 1 streamlit 1 gbkviz 1 mitchondria 1 genetics 1 tsv 1 sarscov2 1 sars-cov-2 1 Biopython 1 command-line 1 synteny 1 matplotlib 1 simulation 1 pydna 1 jupyter-notebooks 1 jupyter-notebook 1 jupyter 1 gibson-assembly 1 gel-simulation 1 gel-electrophoresis 1 gel 1 dna 1 cloning-strategies 1 assembly-strategies 1 anaconda 1 complete-genbank-parser 1 web-crawling 1 fungi 1 Genbank 1 Feature 1 Sequence 1 DNA 1 scraper 1 protein-structures 1 protein-sequences 1 gtdb 1 enzymes 1 database 1 cazymes 1 cazy-webscraper 1 cazy-family 1 cazy 1 carbohydrates 1 webscraper 1 protein 1 bioinforamtics 1 download-genomes 1