pypi.org "microbial" keyword
dnaapler 1.4.0
Reorients assembled microbial sequences19 versions - Latest release: 5 months ago - 237 downloads last month - 145 stars on GitHub - 1 maintainer
bio-peppa 1.2.1
Phylogeny Enhanded Prediction of PAn-genome https://doi.org/10.1101/2020.01.03.89415413 versions - Latest release: over 6 years ago - 84 downloads last month - 45 stars on GitHub - 1 maintainer
grapetree 3.0.0
Web interface of GrapeTree, which is a program for phylogenetic analysis.17 versions - Latest release: about 1 month ago - 1 dependent repositories - 212 downloads last month - 92 stars on GitHub - 3 maintainers
waafle 1.5.0
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events5 versions - Latest release: 5 months ago - 1 dependent repositories - 22 downloads last month - 24 stars on GitHub - 1 maintainer
microsalt 3.0.1
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.1 version - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 5 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
16 versions - Latest release: about 9 years ago - 2 dependent repositories - 600 downloads last month - 229 stars on GitHub - 1 maintainer
scoary 1.6.16
Microbial pan-GWAS using the output from Roary16 versions - Latest release: about 9 years ago - 2 dependent repositories - 600 downloads last month - 229 stars on GitHub - 1 maintainer
anadama2 0.10.0
AnADAMA2: Another Automated Data Analysis Management Application 221 versions - Latest release: about 4 years ago - 1 dependent package - 3 dependent repositories - 88 downloads last month - 1 maintainer
subhelper 1.0.8
Helper scripts for submission to ena (microbial + sarscov2) and gisaid (sarscov2 only)2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 42 downloads last month - 5 stars on GitHub - 1 maintainer
shortbred 0.9.5
ShortBRED: a system for profiling protein families of interest at very high specificity in shotgu...1 version - Latest release: over 6 years ago - 1 dependent repositories - 25 downloads last month - 1 maintainer
uqcme 0.9.4
Microbial Quality Control Dashboard14 versions - Latest release: 21 days ago - 61 downloads last month - 1 stars on GitHub - 1 maintainer
phiercc 1.27
Hierarchical Clustering of cgMLST profiles6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 36 downloads last month - 13 stars on GitHub - 1 maintainer
ngmaster 2.1.0
In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)12 versions - Latest release: 5 months ago - 1 dependent repositories - 44 downloads last month - 10 stars on GitHub - 1 maintainer
mothulity 1.8.0
Easy-to-use tool facilitating work with Mothur.7 versions - Latest release: almost 7 years ago - 1 dependent repositories - 18 downloads last month - 3 stars on GitHub - 1 maintainer
meta-sparse 0.1.12
SPARSE indexes reference genomes in public databases into hierarchical clusters and uses it to pr...12 versions - Latest release: almost 8 years ago - 1 dependent repositories - 36 downloads last month - 19 stars on GitHub - 1 maintainer
metawibele 0.4.8
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome11 versions - Latest release: about 2 years ago - 1 dependent repositories - 22 downloads last month - 22 stars on GitHub - 1 maintainer
kneaddata 0.12.4
17 versions - Latest release: 12 months ago - 1 dependent repositories - 201 downloads last month - 1 maintainerhumann2 2.8.2
HUMAnN2: The HMP Unified Metabolic Analysis Network 225 versions - Latest release: over 6 years ago - 6 dependent repositories - 37 downloads last month - 1 maintainer
humann 3.9
HUMAnN: The HMP Unified Metabolic Analysis Network, version 317 versions - Latest release: over 2 years ago - 1 dependent repositories - 1.78 thousand downloads last month - 1 maintainer
hiercc 1.24
Hierarchical Clustering of cgMLST profiles8 versions - Latest release: over 5 years ago - 1 dependent repositories - 21 downloads last month - 13 stars on GitHub - 1 maintainer
fastsource 0.1
Automatic classification of Source Metadata.1 version - Latest release: over 6 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
biobakery-workflows 3.1
bioBakery workflows: A collection of meta'omic analysis workflows25 versions - Latest release: about 4 years ago - 108 downloads last month - 1 maintainer
plassembler 1.9.0
Quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates20 versions - Latest release: 17 days ago - 222 downloads last month - 92 stars on GitHub - 1 maintainer
baqlava 1.0.0
BAQLaVa: Bioinformatic Application of Quantification and Labeling of Viral Taxonomy (BAQLaVa).2 versions - Latest release: 14 days ago - 18 downloads last month - 18 stars on GitHub - 1 maintainer
camel-core 0.1.7
CAMEL core is a set of utilities used by Bioinformatics Platform at the Belgian Public Health ins...8 versions - Latest release: 4 months ago - 34 stars on GitHub - 1 maintainer
peppan 1.0.6
Phylogeny Enhanded Prediction of PAN-genome https://doi.org/10.1101/2020.01.03.8941547 versions - Latest release: over 6 years ago - 1 dependent repositories - 10 downloads last month - 44 stars on GitHub - 1 maintainer
meningotype 0.8.5
In silico serotyping and finetyping (porA and fetA) of Neisseria meningitidis3 versions - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 17 stars on GitHub - 1 maintainer
clonalevolution 2.3.2
Software for simulating clonal evolution.71 versions - Latest release: almost 3 years ago - 126 downloads last month - 0 stars on GitHub - 1 maintainer
mgexpose 3.10.0
5 versions - Latest release: 5 months ago - 69 downloads last month - 0 stars on GitHub - 1 maintainerfugassem 0.3.8
FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional commu...3 versions - Latest release: over 1 year ago - 30 downloads last month - 21 stars on GitHub - 1 maintainer
seevo1d 1.7.5
Software for simulating slightly effect mutations impact on population evolution in tau leap vers...35 versions - Latest release: about 3 years ago - 73 downloads last month - 1 maintainer
pypolca 0.5.0
Standalone Python implementation of the POLCA polisher from MaSuRCA7 versions - Latest release: 2 months ago - 65 downloads last month - 44 stars on GitHub - 1 maintainer
seevo-1d 0.0.2
Software for simulating slightly effect mutations impact on population evolution in tau leap vers...2 versions - Latest release: almost 4 years ago
posnegevolution 0.1.4
Software for simulating positive and negative effect mutations inpact on population evolution in ...8 versions - Latest release: almost 4 years ago - 37 downloads last month - 1 maintainer
parathaa 1.0.0
PARATHAA: Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assig...4 versions - Latest release: over 1 year ago - 21 downloads last month - 3 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
21
microbiome
11
genomics
11
microbiology
10
metagenomic
10
metatranscriptomic
7
anadama2
6
MLST
5
python-tools
4
numerical modelling
3
clonal evolution
3
pan-genome
3
typing
3
humann
3
bacteria
2
hierarhical clustering
2
baqlava
2
sequence
2
Neisseria
2
python
2
tools
2
biobakery
2
waafle
1
evolution
1
clonal
1
pubsub
1
fugassem
1
public
1
microbial dark matter
1
unknown proteins
1
16s
1
function prediction
1
kneaddata
1
humann2
1
easy-to-use
1
fungal
1
its
1
16s-rrna
1
submission
1
data
1
ena
1
gisaid
1
plasmids
1
research
1
detection
1
element
1
genetic
1
mobile
1
genome
1
text classification
1
machine learning
1
metadata
1
modelling
1
numerical
1
visualisation
1
bigdata
1
mlst
1
tree
1
visualization
1
metawibele
1
metaphlan
1
strainphlan
1
assembly
1
shortbred
1
workflow
1
grid
1
anadama
1
bioactive
1
GWAS
1
Roary
1
gene-presence-absence
1
gwas
1
gene catalog
1
metagenomics
1
clinical
1
pipeline
1
resistance
1
dashboard
1
qc
1
quality-control
1
sequencing
1
mothur
1
diversity
1
microbial-communities
1
microbial-ecology
1