Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microbial" keyword
meta-sparse 0.1.12
SPARSE indexes reference genomes in public databases into hierarchical clusters and uses it to pr...12 versions - Latest release: over 5 years ago - 1 dependent repositories - 39 downloads last month - 17 stars on GitHub - 1 maintainer
shortbred 0.9.5
ShortBRED: a system for profiling protein families of interest at very high specificity in shotgu...1 version - Latest release: almost 4 years ago - 1 dependent repositories - 14 downloads last month - 1 maintainer
humann2 2.8.2
HUMAnN2: The HMP Unified Metabolic Analysis Network 225 versions - Latest release: about 4 years ago - 6 dependent repositories - 162 downloads last month - 1 maintainer
posnegevolution 0.1.4
Software for simulating positive and negative effect mutations inpact on population evolution in ...8 versions - Latest release: over 1 year ago - 45 downloads last month - 1 maintainer
microsalt 3.0.1
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.1 version - Latest release: about 4 years ago - 1 dependent repositories - 11 downloads last month - 2 stars on GitHub - 2 maintainers
grapetree 1.6.1
Web interface of GrapeTree, which is a program for phylogenetic analysis.16 versions - Latest release: over 4 years ago - 1 dependent repositories - 210 downloads last month - 75 stars on GitHub - 3 maintainers
pypolca 0.3.1
Standalone Python implementation of the POLCA polisher from MaSuRCA5 versions - Latest release: 4 months ago - 29 downloads last month - 17 stars on GitHub - 1 maintainer
anadama2 0.10.0
AnADAMA2: Another Automated Data Analysis Management Application 221 versions - Latest release: over 1 year ago - 1 dependent package - 3 dependent repositories - 121 downloads last month - 1 maintainer
parathaa 0.1.0
PARATHAA: Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assig...1 version - Latest release: 5 months ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
plassembler 1.6.2
Quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates10 versions - Latest release: 2 months ago - 71 downloads last month - 45 stars on GitHub - 1 maintainer
dnaapler 0.7.0
Reorients assembled microbial sequences11 versions - Latest release: 4 months ago - 48 downloads last month - 79 stars on GitHub - 1 maintainer
subhelper 1.0.8
Helper scripts for submission to ena (microbial + sarscov2) and gisaid (sarscov2 only)2 versions - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 5 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
16 versions - Latest release: over 6 years ago - 2 dependent repositories - 162 downloads last month - 137 stars on GitHub - 1 maintainer
scoary 1.6.16
Microbial pan-GWAS using the output from Roary16 versions - Latest release: over 6 years ago - 2 dependent repositories - 162 downloads last month - 137 stars on GitHub - 1 maintainer
phiercc 1.27
Hierarchical Clustering of cgMLST profiles6 versions - Latest release: over 2 years ago - 1 dependent repositories - 25 downloads last month - 7 stars on GitHub - 1 maintainer
peppan 1.0.6
Phylogeny Enhanded Prediction of PAN-genome https://doi.org/10.1101/2020.01.03.8941547 versions - Latest release: almost 4 years ago - 1 dependent repositories - 69 downloads last month - 37 stars on GitHub - 1 maintainer
ngmaster 1.0.0
In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)6 versions - Latest release: over 1 year ago - 1 dependent repositories - 38 downloads last month - 4 stars on GitHub - 1 maintainer
mothulity 1.8.0
Easy-to-use tool facilitating work with Mothur.7 versions - Latest release: over 4 years ago - 1 dependent repositories - 26 downloads last month - 3 stars on GitHub - 1 maintainer
metawibele 0.4.7
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome10 versions - Latest release: 8 months ago - 1 dependent repositories - 52 downloads last month - 18 stars on GitHub - 1 maintainer
meningotype 0.8.5
In silico serotyping and finetyping (porA and fetA) of Neisseria meningitidis3 versions - Latest release: almost 3 years ago - 1 dependent repositories - 29 downloads last month - 9 stars on GitHub - 1 maintainer
humann 3.6.1
HUMAnN: The HMP Unified Metabolic Analysis Network, version 315 versions - Latest release: about 1 year ago - 1 dependent repositories - 584 downloads last month - 1 maintainer
hiercc 1.24
Hierarchical Clustering of cgMLST profiles8 versions - Latest release: about 3 years ago - 1 dependent repositories - 23 downloads last month - 7 stars on GitHub - 1 maintainer
fastsource 0.1
Automatic classification of Source Metadata.1 version - Latest release: about 4 years ago - 1 dependent repositories - 6 downloads last month - 0 stars on GitHub - 1 maintainer
bio-peppa 1.2.1
Phylogeny Enhanded Prediction of PAn-genome https://doi.org/10.1101/2020.01.03.89415413 versions - Latest release: almost 4 years ago - 61 downloads last month - 35 stars on GitHub - 1 maintainer
biobakery-workflows 0.15.1
bioBakery workflows: A collection of meta'omic analysis workflows24 versions - Latest release: almost 4 years ago - 101 downloads last month - 1 maintainer
seevo1d 1.7.5
Software for simulating slightly effect mutations impact on population evolution in tau leap vers...35 versions - Latest release: 7 months ago - 238 downloads last month - 1 maintainer
kneaddata 0.12.0
13 versions - Latest release: over 1 year ago - 1 dependent repositories - 204 downloads last month - 1 maintainerclonalevolution 2.3.2
Software for simulating clonal evolution.71 versions - Latest release: 4 months ago - 586 downloads last month - 0 stars on GitHub - 1 maintainer
seevo-1d 0.0.2 removed
Software for simulating slightly effect mutations impact on population evolution in tau leap vers...2 versions - Latest release: over 1 year ago
Related Keywords
bioinformatics
18
genomics
10
microbiome
8
microbiology
7
metagenomic
7
MLST
5
metatranscriptomic
5
anadama2
4
typing
3
pan-genome
3
numerical modelling
3
clonal evolution
3
humann
3
Neisseria
2
hierarhical clustering
2
sequence
2
bacteria
2
metawibele
1
microbial-communities
1
assembly
1
bioactive
1
gene catalog
1
easy-to-use
1
fungal
1
its
1
16s-rrna
1
16s
1
microbial-ecology
1
archived
1
biobakery
1
public
1
python
1
tools
1
metadata
1
machine learning
1
text classification
1
metaphlan
1
strainphlan
1
kneaddata
1
clonal
1
evolution
1
numerical
1
modelling
1
metagenomics
1
shortbred
1
humann2
1
clinical
1
pipeline
1
resistance
1
visulisation
1
bigdata
1
mlst
1
tree
1
visualization
1
workflow
1
grid
1
anadama
1
baqlava
1
plasmids
1
gisaid
1
ena
1
data
1
submission
1
GWAS
1
Roary
1
gene-presence-absence
1
gwas
1
mothur
1
diversity
1