Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "alignment" keyword
search-kwic 0.2
Tool for KWIC representation of paralleltext. Find a word in the parallel text corresponding to q...1 version - Latest release: almost 6 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
align-benchmark 0.1.1
Benchmark tests for dualtext alignment2 versions - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
sam-alignment-reconstructor 0.0.5
SAM Alignment Reconstructor3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 4 maintainers
borders 1.2.0
A module to create a frame when printing a list of strings, with control on the alignment of the ...9 versions - Latest release: 4 months ago - 98 downloads last month - 0 stars on GitHub - 2 maintainers
sato 0.1.7
Python package that generates consensus sequence from the forward and reverse sequences, performs...9 versions - Latest release: 13 days ago - 66 downloads last month - 0 stars on GitHub - 2 maintainers
sciencebeam-alignment 0.0.5
ScienceBeam Alignment5 versions - Latest release: about 4 years ago - 3 dependent repositories - 33 downloads last month - 0 stars on GitHub - 4 maintainers
align1d 2.3.0
A small package for 1d aligment in cuda5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 2 maintainers
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
enpc-aligner 1.0.5
Library of alignment of translated texts in differents languages6 versions - Latest release: about 6 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 2 maintainers
wrilytextaligner 0.10
Aligns text lines and characters within an image1 version - Latest release: 8 months ago - 15 downloads last month - 0 stars on GitHub - 2 maintainers
highresanalysis 0.0.7
Analysis of High Resolution Data from CERN and DESY beam tests6 versions - Latest release: 12 months ago - 56 downloads last month - 0 stars on GitHub - 2 maintainers
metameta 0.0.0.66
Toolkit for analyzing meta-transcriptome/metagenome mapping data63 versions - Latest release: over 7 years ago - 2 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
sil-thot 3.4.3
A toolkit for statistical word alignment and machine translation11 versions - Latest release: 5 months ago - 1 dependent package - 2 dependent repositories - 908 downloads last month - 0 stars on GitHub - 1 maintainer
textlinebreaker 0.2.0
A module to format strings. Length and alignment of lines can be specified. In the new version is...4 versions - Latest release: 22 days ago - 1 dependent package - 116 downloads last month - 0 stars on GitHub - 2 maintainers
elastic-tables 0.0.3
Format text using elastic tabstops3 versions - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas6 versions - Latest release: almost 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 2 maintainers
dsbplot 0.1.3
A package for visualizing alignment variations in DNA-seq data from double-strand break (DSB) exp...3 versions - Latest release: 4 months ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
malign 0.3.2
Library for multiple asymmetric alignments on different alphabets6 versions - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
pyaliner 0.1.2
A library for comparing sequential data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
msplotter 0.1.37
Make a graphical representation of a blastn alignment10 versions - Latest release: 9 months ago - 7 downloads last month - 0 stars on GitHub - 2 maintainers
blockrs 0.6.1
Encode and decode alignment blocks7 versions - Latest release: over 5 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 2 maintainers
phonechars 0.1
Extract phonological phylogenetic characters from aligned data1 version - Latest release: over 1 year ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python17 versions - Latest release: about 5 years ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 1 maintainer
text-alignment-tool 0.2.15
A tool for performing complex text alignment processes.18 versions - Latest release: over 2 years ago - 1 dependent repositories - 156 downloads last month - 1 stars on GitLab.com - 1 maintainer
simple-face-alignment 0.0.2
a simple implmentation for face align2 versions - Latest release: over 3 years ago - 1 dependent repositories - 16 downloads last month - 1 stars on GitHub - 2 maintainers
columnify 1.0.1
To create text-based columnized (ls-like) content suitable for console output from a list of strings5 versions - Latest release: almost 2 years ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
leechem 1.2
Code and data access for “Anatomy and activity patterns in a multifunctional motor neuron and its...2 versions - Latest release: about 1 year ago - 3 downloads last month - 1 stars on GitHub - 2 maintainers
kfa 0.2.0
Khmer Forced Aligner powered by Wav2Vec2CTC and Phonetisaurus10 versions - Latest release: 2 months ago - 175 downloads last month - 1 stars on GitHub - 2 maintainers
binit 0.0.3
Timestamp binning package3 versions - Latest release: 11 months ago - 37 downloads last month - 1 stars on GitHub - 2 maintainers
textjustify 0.0.5
A text justify package5 versions - Latest release: over 3 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 2 maintainers
trajectopy-core 3.1.0
Trajectory Evaluation in Python46 versions - Latest release: 4 days ago - 2 dependent packages - 883 downloads last month - 1 stars on GitHub - 2 maintainers
pygas 1.0.4
python Guide aligned Sequences2 versions - Latest release: over 2 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
seq-tools 1.0.10
Python tools for working with biological sequence data5 versions - Latest release: over 6 years ago - 1 dependent repositories - 86 downloads last month - 1 stars on GitHub - 2 maintainers
pyali 0.1.1
A package for merging alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.21 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 2 maintainers
hadal 0.0.3
Tool for mining/alignment parallel texts3 versions - Latest release: 6 months ago - 19 downloads last month - 1 stars on GitHub - 2 maintainers
seqpipe 0.0.7
Sequencing pipeline5 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 2 maintainers
aligned-treemap 1.0.5
Pure Python implementation of treemap, aligned_treemap, and squarify3 versions - Latest release: over 4 years ago - 44 downloads last month - 2 stars on GitHub - 1 maintainer
bialign 0.3
Bialignment of RNAs and proteins7 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 2 maintainers
tssv 1.1.2
Targeted characterisation of short structural variation.24 versions - Latest release: over 2 years ago - 2 dependent repositories - 367 downloads last month - 2 stars on GitHub - 2 maintainers
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
msa-cigars 0.0.1
To return CIGAR strings of a multiple sequences alignment1 version - Latest release: over 5 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
docoskin 0.1.0
"Onion-skin" visual differences between a reference document image and a scanned copy1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 2 maintainers
clumppling 0.2.0
Clumppling: cluster matching and permutation program with integer linear programming1 version - Latest release: 7 months ago - 16 downloads last month - 2 stars on GitHub - 2 maintainers
palamedes 0.0.5
Palamedes: HGVS variants from a sequence alignment3 versions - Latest release: 24 days ago - 114 downloads last month - 2 stars on GitHub - 2 maintainers
mssw 0.1.5
Modern Cpp binding for complete-striped-smith-watern-library5 versions - Latest release: over 1 year ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
pyicoshift 0.0.3
Python 3 Version of icoshift1 version - Latest release: over 1 year ago - 17 downloads last month - 3 stars on GitHub - 1 maintainer
hladownload 0.0.5
Python command line program and module for retrieving HLA alleles, frequencies and eplets.7 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
pyswrd 0.4.2
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic m...3 versions - Latest release: 4 months ago - 368 downloads last month - 3 stars on GitHub - 2 maintainers
srbpy 0.2.3
A Python/C++ Mixed Road Bridge Design Package17 versions - Latest release: 4 months ago - 1 dependent repositories - 48 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
protmapper 0.0.29
Map protein sites to human reference sequence.27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
protparcon 3.1
ProtParCon - A framework for framework for processing molecular data and identifying parallel and...4 versions - Latest release: about 5 years ago - 1 dependent repositories - 30 downloads last month - 4 stars on GitHub - 2 maintainers
starsalign 1.1.0
A package for aligning and comparing astronomical images15 versions - Latest release: over 1 year ago - 97 downloads last month - 4 stars on GitHub - 1 maintainer
bible-alignments 0.3.5
Word-level alignments for Bibles, including both automatic alignments and manually corrected alig...21 versions - Latest release: 4 months ago - 95 downloads last month - 4 stars on GitHub - 2 maintainers
matchtools 0.1.2
A set of tools for data matching and manipulation3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 5 stars on GitHub - 2 maintainers
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.10 versions - Latest release: 8 months ago - 1 dependent package - 599 downloads last month - 5 stars on GitHub - 2 maintainers
molalignlib 1.0.3
A library to align rigid molecules and clusters12 versions - Latest release: 6 months ago - 8 downloads last month - 6 stars on GitHub - 1 maintainer
nmalign 0.0.3
forced alignment of lists of string by fuzzy string matching3 versions - Latest release: over 1 year ago - 1 dependent repositories - 14 downloads last month - 6 stars on GitHub - 1 maintainer
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 2 maintainers
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.16 versions - Latest release: 4 days ago - 1 dependent repositories - 3.02 thousand downloads last month - 7 stars on GitHub - 2 maintainers
pyprot 0.1-alpha
Python Proteins1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 2 maintainers
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
recan 0.1.5
recan: recombination analysis tool5 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 9 stars on GitHub - 2 maintainers
savemoney 0.2.16
Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You!13 versions - Latest release: about 2 months ago - 194 downloads last month - 9 stars on GitHub - 2 maintainers
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.9 versions - Latest release: 2 months ago - 25 downloads last month - 9 stars on GitHub - 2 maintainers
biastools 0.0.2
The toolkits to analyze reference bias of short DNA read alignment.2 versions - Latest release: 8 months ago - 7 downloads last month - 9 stars on GitHub - 1 maintainer
pxblat 1.1.20
A native python binding for blat suite25 versions - Latest release: 3 months ago - 468 downloads last month - 10 stars on GitHub - 2 maintainers
smallgenomeutilities 0.4.0
A collection of scripts that are useful for dealing with viral RNA NGS data.5 versions - Latest release: 9 months ago - 1 dependent repositories - 44 downloads last month - 10 stars on GitHub - 6 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
pypar 0.0.6
Python phoneme alignment representation6 versions - Latest release: 29 days ago - 1 dependent package - 3 dependent repositories - 1.35 thousand downloads last month - 11 stars on GitHub - 2 maintainers
mvirs 1.1.1
mVIRs: Localisation of inducible prophages using NGS data1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 12 stars on GitHub - 2 maintainers
Top 8.5% on pypi.org
14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
pyspoa 0.2.1
Python bindings to spoa14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data8 versions - Latest release: over 4 years ago - 1 dependent repositories - 88 downloads last month - 12 stars on GitHub - 1 maintainer
seqanpy 0.2
Fast pairwise sequence alignment using SeqAn1 version - Latest release: almost 7 years ago - 1 dependent repositories - 11 downloads last month - 13 stars on GitHub - 2 maintainers
parangonar 1.0.0
Symbolic music alignment8 versions - Latest release: 6 months ago - 1 dependent repositories - 87 downloads last month - 15 stars on GitHub - 1 maintainer
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.16 versions - Latest release: 10 months ago - 1 dependent repositories - 1.81 thousand downloads last month - 16 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
stringdist 1.0.9
This package provides the stringdist module, which includes several functions for calculating str...4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
astred 0.9.7
A collection of syntactic metrics to calculate (dis)similarities between source and target senten...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 117 downloads last month - 17 stars on GitHub - 1 maintainer
spruceup 2022.2.4
A module for lexible identification, visualization, and removal of outliers from large multiple s...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 76 downloads last month - 17 stars on GitHub - 2 maintainers
metalogo 1.1.1
MetaLogo is a heterogeneity-aware sequence logo generator and aligner5 versions - Latest release: over 2 years ago - 2 dependent repositories - 24 downloads last month - 17 stars on GitHub - 2 maintainers
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy1 version - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 19 stars on GitHub - 2 maintainers
trajectopy 2.0.14
Trajectory Evaluation in Python43 versions - Latest release: 4 days ago - 838 downloads last month - 21 stars on GitHub - 2 maintainers
samsift 0.2.5
SAMsift - sift your alignments6 versions - Latest release: about 6 years ago - 1 dependent repositories - 55 downloads last month - 21 stars on GitHub - 2 maintainers
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...8 versions - Latest release: 6 days ago - 2.44 thousand downloads last month - 21 stars on GitHub - 2 maintainers
bapt 1.1.0
Band alignment plotting tool2 versions - Latest release: 12 days ago - 1 dependent repositories - 33 downloads last month - 21 stars on GitHub - 1 maintainer
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
pywfa 0.5.1
Align sequences using WFA2-lib9 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 261 downloads last month - 22 stars on GitHub - 1 maintainer
caretta 0.1.2
Fast multiple protein structure alignment3 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 24 stars on GitHub - 2 maintainers
splam 1.0.10
Splice junction scoring tool30 versions - Latest release: 6 months ago - 162 downloads last month - 28 stars on GitHub - 2 maintainers
torch-cif 0.2.0
A fast parallel implementation of continuous integrate-and-fire (CIF) https://arxiv.org/abs/1905....2 versions - Latest release: 3 months ago - 23 downloads last month - 28 stars on GitHub - 1 maintainer
pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files5 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 31 stars on GitHub - 2 maintainers
face-crop-plus 1.1.0
Automatic face aligner and cropper with quality enhancement and attribute parsing.5 versions - Latest release: 11 months ago - 216 downloads last month - 32 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
minineedle 3.1.5
Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects.15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
dmpfold 2.0
Protein structure prediction with the DMPfold2 method2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers
pyalign 0.4.4
Fast and Versatile Alignments for Python16 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 951 downloads last month - 43 stars on GitHub - 2 maintainers
reveal 0.2.2
Graph based multi genome aligner2 versions - Latest release: over 4 years ago - 2 dependent repositories - 46 downloads last month - 43 stars on GitHub - 2 maintainers
alignqc 2.0.5
Python and R based tool for assessing the quality of alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 45 stars on GitHub - 1 maintainer
minimappers2 0.1.3
A Python wrapper for minimap2-rs4 versions - Latest release: over 1 year ago - 8 downloads last month - 47 stars on GitHub - 1 maintainer
pyfoal 1.0.1
Python forced aligner6 versions - Latest release: 29 days ago - 1 dependent repositories - 203 downloads last month - 50 stars on GitHub - 1 maintainer
linmdtw 0.1.7
A linear memory, exact, parallelizable algorithm for dynamic time warping in arbitrary Euclidean ...7 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 50 stars on GitHub - 2 maintainers
Related Keywords
python
46
bioinformatics
41
genomics
19
sequence
17
pandas
15
data-analysis
15
data-science
15
flexible
14
mapping
14
poa
11
cuda
10
gpu
10
nvidia
10
partial-order-alignment
10
python-api
10
registration
8
protein
8
multiple-sequence-alignment
7
deep-learning
7
visualization
7
sequence-alignment
6
speech
6
audio
6
graph
5
nlp
5
phylogenetics
5
subtitles
5
align
5
pytorch
5
text
5
synchronization
5
machine-learning
5
python3
5
dna
5
biology
4
voice-activity-detection
4
edit-distance
4
levenshtein
4
srt
4
sync
4
ffmpeg
4
NGS
4
llm
4
comparison
4
needleman-wunsch
4
forced-alignment
4
string
4
captions
4
neuroscience
3
python-library
3
similarity
3
face
3
msa
3
clustering
3
deep learning
3
caption
3
fast-fourier-transform
3
fft
3
word
3
metagenomics
3
dtw
3
parsing
3
sequencing
3
data
3
minimap2
3
vlc-media-player
3
vlc
3
video
3
vad
3
subtitle
3
string-alignment
3
srt-subtitles
3
ai
3
speech-detection
3
duration
2
opencv
2
compare
2
phoneme
2
hgvs
2
computer vision
2
protein-structure
2
parallel-corpus
2
nlp-library
2
machine-translation
2
TTS
2
trimming
2
distance
2
edit
2
trajectory-analysis
2
metrics
2
benchmark
2
robotics
2
ai-functions
2
match
2
statistics
2
attributes
2
smoothing
2
rust
2
rmsd
2
scikits
2