Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "alignment" keyword
Top 0.1% on pypi.org
109 versions - Latest release: about 1 month ago - 17,045 dependent packages - 310,870 dependent repositories - 214 million downloads last month - 40,616 stars on GitHub - 11 maintainers
pandas 2.2.2 💰
Powerful data structures for data analysis, time series, and statistics109 versions - Latest release: about 1 month ago - 17,045 dependent packages - 310,870 dependent repositories - 214 million downloads last month - 40,616 stars on GitHub - 11 maintainers
smallgenomeutilities 0.4.0
A collection of scripts that are useful for dealing with viral RNA NGS data.5 versions - Latest release: 9 months ago - 1 dependent repositories - 44 downloads last month - 10 stars on GitHub - 6 maintainers
sam-alignment-reconstructor 0.0.5
SAM Alignment Reconstructor3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 4 maintainers
sciencebeam-alignment 0.0.5
ScienceBeam Alignment5 versions - Latest release: about 4 years ago - 3 dependent repositories - 33 downloads last month - 0 stars on GitHub - 4 maintainers
Top 8.5% on pypi.org
14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
pyspoa 0.2.1
Python bindings to spoa14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
disco-generation 1.1.1
A toolkit for distributional control of generative models4 versions - Latest release: 10 months ago - 20 downloads last month - 67 stars on GitHub - 3 maintainers
savemoney 0.2.16
Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You!13 versions - Latest release: about 2 months ago - 194 downloads last month - 9 stars on GitHub - 2 maintainers
pyclaragenomics-cuda-10-0 0.4.3
NVIDIA genomics python libraries and utiliites2 versions - Latest release: over 4 years ago - 1 dependent repositories - 6 downloads last month - 275 stars on GitHub - 2 maintainers
sato 0.1.7
Python package that generates consensus sequence from the forward and reverse sequences, performs...9 versions - Latest release: 12 days ago - 66 downloads last month - 0 stars on GitHub - 2 maintainers
py-goicp 0.0.4
GO-ICP compiled using Cython to use in python4 versions - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 113 stars on GitHub - 2 maintainers
scheduled-tasks-reader 0.1.1 💰
A program to various information of scheduled tasks.2 versions - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 41,864 stars on GitHub - 2 maintainers
pandas-xlwt 0.1.1 💰
Flexible and powerful data analysis / manipulation library for Python, providing labeled data str...2 versions - Latest release: 10 months ago - 275 downloads last month - 41,864 stars on GitHub - 2 maintainers
clumppling 0.2.0
Clumppling: cluster matching and permutation program with integer linear programming1 version - Latest release: 7 months ago - 16 downloads last month - 2 stars on GitHub - 2 maintainers
textlinebreaker 0.2.0
A module to format strings. Length and alignment of lines can be specified. In the new version is...4 versions - Latest release: 21 days ago - 1 dependent package - 116 downloads last month - 0 stars on GitHub - 2 maintainers
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 2 maintainers
metalogo 1.1.1
MetaLogo is a heterogeneity-aware sequence logo generator and aligner5 versions - Latest release: over 2 years ago - 2 dependent repositories - 24 downloads last month - 17 stars on GitHub - 2 maintainers
pyaliner 0.1.2
A library for comparing sequential data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
recan 0.1.5
recan: recombination analysis tool5 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 9 stars on GitHub - 2 maintainers
dmpfold 2.0
Protein structure prediction with the DMPfold2 method2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers
spruceup 2022.2.4
A module for lexible identification, visualization, and removal of outliers from large multiple s...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 76 downloads last month - 17 stars on GitHub - 2 maintainers
moexalgo 2.0.0 💰
Python lib for MOEX AlgoPack data3 versions - Latest release: 8 days ago - 598 downloads last month - 41,864 stars on GitHub - 2 maintainers
pydeas 1.0.2 💰
A simple db package5 versions - Latest release: over 1 year ago - 17 downloads last month - 41,864 stars on GitHub - 2 maintainers
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas6 versions - Latest release: almost 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 2 maintainers
tssv 1.1.2
Targeted characterisation of short structural variation.24 versions - Latest release: over 2 years ago - 2 dependent repositories - 367 downloads last month - 2 stars on GitHub - 2 maintainers
subaligner 0.3.6
Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-...29 versions - Latest release: 5 months ago - 1 dependent repositories - 664 downloads last month - 418 stars on GitHub - 2 maintainers
stxmproc 0.0.1
Pixel Alignment and Normalization of STXM images.1 version - Latest release: over 6 years ago - 1 dependent repositories - 21 downloads last month - 61 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
16 versions - Latest release: about 1 year ago - 13 dependent packages - 780 dependent repositories - 978 thousand downloads last month - 745 stars on GitHub - 2 maintainers
facexlib 0.3.0
Basic face library16 versions - Latest release: about 1 year ago - 13 dependent packages - 780 dependent repositories - 978 thousand downloads last month - 745 stars on GitHub - 2 maintainers
ffsubs 0.3.3 💰
Language-agnostic synchronization of subtitles with video via speech detection, and other subtitl...1 version - Latest release: about 4 years ago - 1 dependent repositories - 11 downloads last month - 6,513 stars on GitHub - 2 maintainers
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.9 versions - Latest release: 2 months ago - 25 downloads last month - 9 stars on GitHub - 2 maintainers
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 51 downloads last month - 2 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
blockrs 0.6.1
Encode and decode alignment blocks7 versions - Latest release: over 5 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 2 maintainers
timething 0.0.27
Aligning text transcripts with their audio recordings.29 versions - Latest release: over 1 year ago - 1 dependent repositories - 178 downloads last month - 64 stars on GitHub - 2 maintainers
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy1 version - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 19 stars on GitHub - 2 maintainers
dsbplot 0.1.3
A package for visualizing alignment variations in DNA-seq data from double-strand break (DSB) exp...3 versions - Latest release: 4 months ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.5% on pypi.org
8 versions - Latest release: 5 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
monkey-patch.py 0.0.12
NOTE: This project has been moved [HERE](https://pypi.org/project/tanuki.py/)8 versions - Latest release: 5 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
tanuki.py 0.2.0
The easiest way to build scalable LLM-powered applications, which gets cheaper and faster over time.6 versions - Latest release: 3 months ago - 1 dependent package - 77 downloads last month - 622 stars on GitHub - 2 maintainers
trajectopy 2.0.14
Trajectory Evaluation in Python43 versions - Latest release: 3 days ago - 838 downloads last month - 21 stars on GitHub - 2 maintainers
softalignments 1.0.4
Neural macine translation soft alignment visualisations for web and command line1 version - Latest release: almost 4 years ago - 1 dependent repositories - 17 downloads last month - 72 stars on GitHub - 2 maintainers
face-crop-plus 1.1.0
Automatic face aligner and cropper with quality enhancement and attribute parsing.5 versions - Latest release: 11 months ago - 216 downloads last month - 32 stars on GitHub - 2 maintainers
pyprot 0.1-alpha
Python Proteins1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 2 maintainers
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
matchtools 0.1.2
A set of tools for data matching and manipulation3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 5 stars on GitHub - 2 maintainers
pyswrd 0.4.2
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic m...3 versions - Latest release: 4 months ago - 368 downloads last month - 3 stars on GitHub - 2 maintainers
highresanalysis 0.0.7
Analysis of High Resolution Data from CERN and DESY beam tests6 versions - Latest release: 12 months ago - 56 downloads last month - 0 stars on GitHub - 2 maintainers
trajectopy-core 3.1.0
Trajectory Evaluation in Python46 versions - Latest release: 3 days ago - 2 dependent packages - 883 downloads last month - 1 stars on GitHub - 2 maintainers
genomeworks-cuda-10-0 2021.2.0
NVIDIA genomics python libraries and utiliites221 versions - Latest release: about 3 years ago - 1 dependent repositories - 2 thousand downloads last month - 276 stars on GitHub - 2 maintainers
textjustify 0.0.5
A text justify package5 versions - Latest release: about 3 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 2 maintainers
datawise 0.0.23 💰
AI Assistant for Python Data Analytics11 versions - Latest release: 11 months ago - 16 downloads last month - 41,864 stars on GitHub - 2 maintainers
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.16 versions - Latest release: 3 days ago - 1 dependent repositories - 3.02 thousand downloads last month - 7 stars on GitHub - 2 maintainers
scikit-fda-sim 0.7.1
Functional Data Analysis Python package.1 version - Latest release: over 1 year ago - 19 downloads last month - 272 stars on GitHub - 2 maintainers
pxblat 1.1.20
A native python binding for blat suite25 versions - Latest release: 3 months ago - 468 downloads last month - 10 stars on GitHub - 2 maintainers
aligner-pytorch 0.0.19 💰
Aligner - PyTorch13 versions - Latest release: over 1 year ago - 75 downloads last month - 1,664 stars on GitHub - 2 maintainers
wrilytextaligner 0.10
Aligns text lines and characters within an image1 version - Latest release: 8 months ago - 15 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.6% on pypi.org
1 version - Latest release: 9 months ago - 2 dependent repositories - 2 maintainers
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam1 version - Latest release: 9 months ago - 2 dependent repositories - 2 maintainers
simple-face-alignment 0.0.2
a simple implmentation for face align2 versions - Latest release: over 3 years ago - 1 dependent repositories - 16 downloads last month - 1 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
stringdist 1.0.9
This package provides the stringdist module, which includes several functions for calculating str...4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
protparcon 3.1
ProtParCon - A framework for framework for processing molecular data and identifying parallel and...4 versions - Latest release: about 5 years ago - 1 dependent repositories - 30 downloads last month - 4 stars on GitHub - 2 maintainers
metameta 0.0.0.66
Toolkit for analyzing meta-transcriptome/metagenome mapping data63 versions - Latest release: over 7 years ago - 2 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
nwalign 0.3.1
Needleman-Wunsch global sequence alignment7 versions - Latest release: over 14 years ago - 8 dependent repositories - 97 downloads last month - 2 maintainers
ultra-bioinformatics 0.0.4
Splice aligner of long transcriptomic reads to genome.14 versions - Latest release: over 2 years ago - 2 dependent repositories - 99 downloads last month - 56 stars on GitHub - 2 maintainers
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.10 versions - Latest release: 8 months ago - 1 dependent package - 599 downloads last month - 5 stars on GitHub - 2 maintainers
onto-merger 0.1.0
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes,(i.e. ontolog...1 version - Latest release: almost 2 years ago - 12 downloads last month - 89 stars on GitHub - 2 maintainers
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
15 versions - Latest release: 2 months ago - 5 dependent packages - 14 dependent repositories - 31.8 thousand downloads last month - 272 stars on GitHub - 2 maintainers
scikit-fda 0.9.1
Functional Data Analysis Python package.15 versions - Latest release: 2 months ago - 5 dependent packages - 14 dependent repositories - 31.8 thousand downloads last month - 272 stars on GitHub - 2 maintainers
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 479 downloads last month - 276 stars on GitHub - 2 maintainers
leechem 1.2
Code and data access for “Anatomy and activity patterns in a multifunctional motor neuron and its...2 versions - Latest release: about 1 year ago - 3 downloads last month - 1 stars on GitHub - 2 maintainers
msplotter 0.1.37
Make a graphical representation of a blastn alignment10 versions - Latest release: 9 months ago - 7 downloads last month - 0 stars on GitHub - 2 maintainers
bible-alignments 0.3.5
Word-level alignments for Bibles, including both automatic alignments and manually corrected alig...21 versions - Latest release: 4 months ago - 95 downloads last month - 4 stars on GitHub - 2 maintainers
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 2 maintainers
kfa 0.2.0
Khmer Forced Aligner powered by Wav2Vec2CTC and Phonetisaurus10 versions - Latest release: 2 months ago - 175 downloads last month - 1 stars on GitHub - 2 maintainers
mssw 0.1.5
Modern Cpp binding for complete-striped-smith-watern-library5 versions - Latest release: over 1 year ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
mvirs 1.1.1
mVIRs: Localisation of inducible prophages using NGS data1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 12 stars on GitHub - 2 maintainers
caretta 0.1.2
Fast multiple protein structure alignment3 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 24 stars on GitHub - 2 maintainers
rich-msa 0.1.0
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.1 version - Latest release: almost 2 years ago - 1 dependent repositories - 33 downloads last month - 75 stars on GitHub - 2 maintainers
samsift 0.2.5
SAMsift - sift your alignments6 versions - Latest release: about 6 years ago - 1 dependent repositories - 55 downloads last month - 21 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.21 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
minineedle 3.1.5
Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects.15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
hadal 0.0.3
Tool for mining/alignment parallel texts3 versions - Latest release: 6 months ago - 19 downloads last month - 1 stars on GitHub - 2 maintainers
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
splam 1.0.10
Splice junction scoring tool30 versions - Latest release: 6 months ago - 162 downloads last month - 28 stars on GitHub - 2 maintainers
datadreamer.dev 0.35.0
Prompt. Generate Synthetic Data. Train & Align Models.34 versions - Latest release: 9 days ago - 1.05 thousand downloads last month - 648 stars on GitHub - 2 maintainers
docoskin 0.1.0
"Onion-skin" visual differences between a reference document image and a scanned copy1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 2 maintainers
align1d 2.3.0
A small package for 1d aligment in cuda5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 2 maintainers
phonechars 0.1
Extract phonological phylogenetic characters from aligned data1 version - Latest release: over 1 year ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
viro-seq-utils 1.3.4
Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory.3 versions - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 2 maintainers
reveal 0.2.2
Graph based multi genome aligner2 versions - Latest release: over 4 years ago - 2 dependent repositories - 46 downloads last month - 43 stars on GitHub - 2 maintainers
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites150 versions - Latest release: over 3 years ago - 1 dependent repositories - 865 downloads last month - 273 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
104 versions - Latest release: almost 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites104 versions - Latest release: almost 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 2 maintainers
seqpipe 0.0.7
Sequencing pipeline5 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 2 maintainers
subsume 0.2.16 💰
Language-agnostic synchronization of subtitles with video via speech detection.1 version - Latest release: over 4 years ago - 1 dependent repositories - 5 downloads last month - 6,478 stars on GitHub - 2 maintainers
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites224 versions - Latest release: almost 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 2 maintainers
pypar 0.0.6
Python phoneme alignment representation6 versions - Latest release: 28 days ago - 1 dependent package - 3 dependent repositories - 1.35 thousand downloads last month - 11 stars on GitHub - 2 maintainers
wisedata 1.0.13 💰
AI Assistant for Python Data Analytics14 versions - Latest release: 10 months ago - 119 downloads last month - 41,864 stars on GitHub - 2 maintainers
borders 1.2.0
A module to create a frame when printing a list of strings, with control on the alignment of the ...9 versions - Latest release: 4 months ago - 98 downloads last month - 0 stars on GitHub - 2 maintainers
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
pyali 0.1.1
A package for merging alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...8 versions - Latest release: 5 days ago - 2.44 thousand downloads last month - 21 stars on GitHub - 2 maintainers
Related Keywords
python
46
bioinformatics
41
genomics
19
sequence
17
pandas
15
data-analysis
15
data-science
15
mapping
14
flexible
14
poa
11
gpu
10
cuda
10
nvidia
10
partial-order-alignment
10
python-api
10
registration
8
protein
8
visualization
7
deep-learning
7
multiple-sequence-alignment
7
sequence-alignment
6
audio
6
speech
6
nlp
5
text
5
dna
5
graph
5
align
5
phylogenetics
5
synchronization
5
machine-learning
5
subtitles
5
pytorch
5
python3
5
forced-alignment
4
captions
4
llm
4
levenshtein
4
edit-distance
4
biology
4
needleman-wunsch
4
string
4
voice-activity-detection
4
ffmpeg
4
NGS
4
comparison
4
srt
4
sync
4
fft
3
fast-fourier-transform
3
deep learning
3
python-library
3
speech-detection
3
data
3
caption
3
string-alignment
3
subtitle
3
parsing
3
vad
3
video
3
vlc
3
face
3
vlc-media-player
3
srt-subtitles
3
neuroscience
3
similarity
3
clustering
3
metagenomics
3
msa
3
ai
3
word
3
minimap2
3
dtw
3
sequencing
3
opencv
2
spliced-alignment
2
annotation
2
block
2
cli
2
parallel-corpus
2
nlp-library
2
hgvs
2
speech-recognition
2
tts
2
image-processing
2
ai-functions
2
chat-gpt
2
distillation
2
gpt-4
2
compare
2
gpt-4-api
2
genetics
2
pydantic
2
research
2
band
2
command-line
2
astronomy
2
translation
2
machine
2
asr
2