Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "umi" keyword

umipy 1.0.5
Umi API wrapper for python
6 versions - Latest release: 4 months ago - 31 downloads last month - 3 stars on GitHub - 1 maintainer
caltha 0.5.1
A python package to process UMI tagged mixed amplicon metabarcoding data.
10 versions - Latest release: about 4 years ago - 66 downloads last month - 2 stars on GitHub - 1 maintainer
cutseq 0.0.34 💰
Automatically cut adapter / barcode / UMI from NGS data
34 versions - Latest release: 22 days ago - 2.34 thousand downloads last month - 3 stars on GitHub - 1 maintainer
umitools 0.3.4
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
3 versions - Latest release: about 6 years ago - 2 dependent repositories - 40 downloads last month - 12 stars on GitHub - 1 maintainer
pyumi 0.5.0
Create and edit umi projects
6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 44 downloads last month - 3 stars on GitHub - 1 maintainer
dropseqpipe 0.23a0
A drop-seq pipeline
2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 13 downloads last month - 145 stars on GitHub - 1 maintainer
archetypal 2.17.9
Retrieve, construct, simulate, convert and analyse building archetypes
66 versions - Latest release: 4 months ago - 2 dependent repositories - 635 downloads last month - 11 stars on GitHub - 1 maintainer
Related Keywords
python 4 UMI 3 rna-seq 2 bioinformatics 2 plot 1 pipeline 1 picard 1 multiqc 1 dropseqtools 1 dropseq 1 drop-seq 1 conda 1 cell 1 single 1 rhino3dm 1 gis 1 unique-molecular-identifier 1 small-rna 1 high-throughput-sequencing 1 api 1 reference-genome 1 scrb-seq 1 scrbseq 1 snakemake 1 star 1 yaml 1 Building 1 archetypes 1 buildings 1 energy-simulation 1 energyplus 1 energyplus-models 1 simulation-templates 1 umi-template 1 visualization 1 asyncio 1 Metabarcoding 1 Amplicon 1 amplicon 1 metabarcoding 1 vsearch 1 NGS 1 adapter 1 barcode 1 cutadapt 1 dna-seq 1 ngs 1 RNA-seq 1 small 1 unique 1 molecular 1 identifier 1 PCR 1 duplicates 1 cycle 1 starting 1 material 1 sequencing 1 depth 1 high-throughput 1 deep 1 transcriptome 1 genome 1 umitools 1 RNA 1