Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "alignment" keyword

Top 0.1% on pypi.org
pandas 2.2.2 💰
Powerful data structures for data analysis, time series, and statistics
109 versions - Latest release: about 1 month ago - 17,045 dependent packages - 310,870 dependent repositories - 214 million downloads last month - 40,616 stars on GitHub - 11 maintainers
Top 1.6% on pypi.org
facexlib 0.3.0
Basic face library
16 versions - Latest release: about 1 year ago - 13 dependent packages - 780 dependent repositories - 978 thousand downloads last month - 745 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
scikit-fda 0.9.1
Functional Data Analysis Python package.
15 versions - Latest release: 3 months ago - 5 dependent packages - 14 dependent repositories - 31.8 thousand downloads last month - 272 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
edit-distance 1.0.6
Computing edit distance on arbitrary Python sequences.
12 versions - Latest release: about 1 year ago - 9 dependent packages - 21 dependent repositories - 30.5 thousand downloads last month - 100 stars on GitHub - 1 maintainer
Top 2.6% on pypi.org
rmsd 1.5.1
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB...
9 versions - Latest release: over 1 year ago - 8 dependent packages - 25 dependent repositories - 16.3 thousand downloads last month - 457 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
stringdist 1.0.9
This package provides the stringdist module, which includes several functions for calculating str...
4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
Top 3.2% on pypi.org
ffsubsync 0.4.25 💰
Language-agnostic synchronization of subtitles with video.
29 versions - Latest release: about 1 year ago - 2 dependent packages - 9 dependent repositories - 3.66 thousand downloads last month - 6,339 stars on GitHub - 1 maintainer
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
16 versions - Latest release: 3 days ago - 1 dependent repositories - 3.02 thousand downloads last month - 7 stars on GitHub - 2 maintainers
thingsvision 2.6.4
Extracting image features from state-of-the-art neural networks for Computer Vision made easy
207 versions - Latest release: 9 days ago - 1 dependent repositories - 2.88 thousand downloads last month - 141 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
aeneas 1.7.3.0
aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka ...
15 versions - Latest release: about 7 years ago - 2 dependent packages - 18 dependent repositories - 2.49 thousand downloads last month - 2,375 stars on GitHub - 1 maintainer
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
8 versions - Latest release: 5 days ago - 2.44 thousand downloads last month - 21 stars on GitHub - 2 maintainers
Top 9.4% on pypi.org
protmapper 0.0.29
Map protein sites to human reference sequence.
27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
astroalign 2.5.1
Astrometric Alignment of Images
27 versions - Latest release: 7 months ago - 11 dependent packages - 21 dependent repositories - 2.11 thousand downloads last month - 133 stars on GitHub - 1 maintainer
genomeworks-cuda-10-0 2021.2.0
NVIDIA genomics python libraries and utiliites
221 versions - Latest release: about 3 years ago - 1 dependent repositories - 2 thousand downloads last month - 276 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
montreal-forced-aligner 3.0.7
Montreal Forced Aligner is a package for aligning speech corpora using Kaldi functionality.
93 versions - Latest release: 9 days ago - 1 dependent package - 5 dependent repositories - 1.97 thousand downloads last month - 1,124 stars on GitHub - 1 maintainer
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
16 versions - Latest release: 10 months ago - 1 dependent repositories - 1.81 thousand downloads last month - 16 stars on GitHub - 1 maintainer
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites
224 versions - Latest release: almost 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 2 maintainers
Top 8.5% on pypi.org
pyspoa 0.2.1
Python bindings to spoa
14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
pypar 0.0.6
Python phoneme alignment representation
6 versions - Latest release: 29 days ago - 1 dependent package - 3 dependent repositories - 1.35 thousand downloads last month - 11 stars on GitHub - 2 maintainers
datadreamer.dev 0.35.0
Prompt. Generate Synthetic Data. Train & Align Models.
34 versions - Latest release: 10 days ago - 1.05 thousand downloads last month - 648 stars on GitHub - 2 maintainers
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 2 maintainers
pyalign 0.4.4
Fast and Versatile Alignments for Python
16 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 951 downloads last month - 43 stars on GitHub - 2 maintainers
sil-thot 3.4.3
A toolkit for statistical word alignment and machine translation
11 versions - Latest release: 5 months ago - 1 dependent package - 2 dependent repositories - 908 downloads last month - 0 stars on GitHub - 1 maintainer
trajectopy-core 3.1.0
Trajectory Evaluation in Python
46 versions - Latest release: 3 days ago - 2 dependent packages - 883 downloads last month - 1 stars on GitHub - 2 maintainers
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites
150 versions - Latest release: over 3 years ago - 1 dependent repositories - 865 downloads last month - 273 stars on GitHub - 2 maintainers
trajectopy 2.0.14
Trajectory Evaluation in Python
43 versions - Latest release: 3 days ago - 838 downloads last month - 21 stars on GitHub - 2 maintainers
Top 7.1% on pypi.org
asr_evaluation 2.0.4
Evaluating ASR (automatic speech recognition) hypotheses, i.e. computing word error rate.
19 versions - Latest release: over 5 years ago - 4 dependent repositories - 779 downloads last month - 100 stars on GitHub - 1 maintainer
distilabel 1.0.3
AI Feedback (AIF) framework
16 versions - Latest release: 16 days ago - 776 downloads last month - 2 maintainers
Top 9.9% on pypi.org
minineedle 3.1.5
Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects.
15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
deepslice 1.1.7
A package to align histology to 3D brain atlases
16 versions - Latest release: 3 months ago - 674 downloads last month - 67 stars on GitHub - 1 maintainer
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites
155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 2 maintainers
subaligner 0.3.6
Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-...
29 versions - Latest release: 5 months ago - 1 dependent repositories - 664 downloads last month - 418 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites
104 versions - Latest release: almost 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
dtwalign 0.1.1
Comprehensive DTW package which enables partial mathing and has various constraint options
7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.
10 versions - Latest release: 8 months ago - 1 dependent package - 599 downloads last month - 5 stars on GitHub - 2 maintainers
moexalgo 2.0.0 💰
Python lib for MOEX AlgoPack data
3 versions - Latest release: 8 days ago - 598 downloads last month - 41,864 stars on GitHub - 2 maintainers
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 479 downloads last month - 276 stars on GitHub - 2 maintainers
pxblat 1.1.20
A native python binding for blat suite
25 versions - Latest release: 3 months ago - 468 downloads last month - 10 stars on GitHub - 2 maintainers
pyswrd 0.4.2
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic m...
3 versions - Latest release: 4 months ago - 368 downloads last month - 3 stars on GitHub - 2 maintainers
tssv 1.1.2
Targeted characterisation of short structural variation.
24 versions - Latest release: over 2 years ago - 2 dependent repositories - 367 downloads last month - 2 stars on GitHub - 2 maintainers
geomapi 0.3.3
A standard library to manage geomatic data
34 versions - Latest release: 7 months ago - 1 dependent repositories - 328 downloads last month - 1 maintainer
pandas-xlwt 0.1.1 💰
Flexible and powerful data analysis / manipulation library for Python, providing labeled data str...
2 versions - Latest release: 10 months ago - 275 downloads last month - 41,864 stars on GitHub - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
pywfa 0.5.1
Align sequences using WFA2-lib
9 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 261 downloads last month - 22 stars on GitHub - 1 maintainer
face-crop-plus 1.1.0
Automatic face aligner and cropper with quality enhancement and attribute parsing.
5 versions - Latest release: 11 months ago - 216 downloads last month - 32 stars on GitHub - 2 maintainers
audalign 1.2.4
Audio Alignment and Recognition in Python
27 versions - Latest release: 4 months ago - 1 dependent repositories - 215 downloads last month - 67 stars on GitHub - 1 maintainer
senseppi 0.7.1
SENSE-PPI: Sequence-based EvolutioNary ScalE Protein-Protein Interaction prediction
17 versions - Latest release: 23 days ago - 204 downloads last month - 1,259 stars on GitHub - 1 maintainer
pyfoal 1.0.1
Python forced aligner
6 versions - Latest release: 29 days ago - 1 dependent repositories - 203 downloads last month - 50 stars on GitHub - 1 maintainer
savemoney 0.2.16
Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You!
13 versions - Latest release: about 2 months ago - 194 downloads last month - 9 stars on GitHub - 2 maintainers
timething 0.0.27
Aligning text transcripts with their audio recordings.
29 versions - Latest release: over 1 year ago - 1 dependent repositories - 178 downloads last month - 64 stars on GitHub - 2 maintainers
kfa 0.2.0
Khmer Forced Aligner powered by Wav2Vec2CTC and Phonetisaurus
10 versions - Latest release: 2 months ago - 175 downloads last month - 1 stars on GitHub - 2 maintainers
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python
17 versions - Latest release: about 5 years ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 1 maintainer
splam 1.0.10
Splice junction scoring tool
30 versions - Latest release: 6 months ago - 162 downloads last month - 28 stars on GitHub - 2 maintainers
text-alignment-tool 0.2.15
A tool for performing complex text alignment processes.
18 versions - Latest release: over 2 years ago - 1 dependent repositories - 156 downloads last month - 1 stars on GitLab.com - 1 maintainer
arbow 0.6.0
Cultivate your MSA to get better trees
15 versions - Latest release: almost 4 years ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment
4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas
6 versions - Latest release: almost 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 2 maintainers
wisedata 1.0.13 💰
AI Assistant for Python Data Analytics
14 versions - Latest release: 10 months ago - 119 downloads last month - 41,864 stars on GitHub - 2 maintainers
astred 0.9.7
A collection of syntactic metrics to calculate (dis)similarities between source and target senten...
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 117 downloads last month - 17 stars on GitHub - 1 maintainer
textlinebreaker 0.2.0
A module to format strings. Length and alignment of lines can be specified. In the new version is...
4 versions - Latest release: 21 days ago - 1 dependent package - 116 downloads last month - 0 stars on GitHub - 2 maintainers
palamedes 0.0.5
Palamedes: HGVS variants from a sequence alignment
3 versions - Latest release: 23 days ago - 114 downloads last month - 2 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants
20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
ultra-bioinformatics 0.0.4
Splice aligner of long transcriptomic reads to genome.
14 versions - Latest release: over 2 years ago - 2 dependent repositories - 99 downloads last month - 56 stars on GitHub - 2 maintainers
borders 1.2.0
A module to create a frame when printing a list of strings, with control on the alignment of the ...
9 versions - Latest release: 4 months ago - 98 downloads last month - 0 stars on GitHub - 2 maintainers
nwalign 0.3.1
Needleman-Wunsch global sequence alignment
7 versions - Latest release: over 14 years ago - 8 dependent repositories - 97 downloads last month - 2 maintainers
starsalign 1.1.0
A package for aligning and comparing astronomical images
15 versions - Latest release: over 1 year ago - 97 downloads last month - 4 stars on GitHub - 1 maintainer
bible-alignments 0.3.5
Word-level alignments for Bibles, including both automatic alignments and manually corrected alig...
21 versions - Latest release: 4 months ago - 95 downloads last month - 4 stars on GitHub - 2 maintainers
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data
8 versions - Latest release: over 4 years ago - 1 dependent repositories - 88 downloads last month - 12 stars on GitHub - 1 maintainer
parangonar 1.0.0
Symbolic music alignment
8 versions - Latest release: 6 months ago - 1 dependent repositories - 87 downloads last month - 15 stars on GitHub - 1 maintainer
seq-tools 1.0.10
Python tools for working with biological sequence data
5 versions - Latest release: over 6 years ago - 1 dependent repositories - 86 downloads last month - 1 stars on GitHub - 2 maintainers
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...
14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
tanuki.py 0.2.0
The easiest way to build scalable LLM-powered applications, which gets cheaper and faster over time.
6 versions - Latest release: 3 months ago - 1 dependent package - 77 downloads last month - 622 stars on GitHub - 2 maintainers
spruceup 2022.2.4
A module for lexible identification, visualization, and removal of outliers from large multiple s...
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 76 downloads last month - 17 stars on GitHub - 2 maintainers
aligner-pytorch 0.0.19 💰
Aligner - PyTorch
13 versions - Latest release: over 1 year ago - 75 downloads last month - 1,664 stars on GitHub - 2 maintainers
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
py-goicp 0.0.4
GO-ICP compiled using Cython to use in python
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 113 stars on GitHub - 2 maintainers
Top 8.5% on pypi.org
monkey-patch.py 0.0.12
NOTE: This project has been moved [HERE](https://pypi.org/project/tanuki.py/)
8 versions - Latest release: 6 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
sato 0.1.7
Python package that generates consensus sequence from the forward and reverse sequences, performs...
9 versions - Latest release: 12 days ago - 66 downloads last month - 0 stars on GitHub - 2 maintainers
pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 31 stars on GitHub - 2 maintainers
eda-mds 2.1.8 💰
EBasic EDA functions implemented
9 versions - Latest release: 3 months ago - 61 downloads last month - 41,864 stars on GitHub - 2 maintainers
highresanalysis 0.0.7
Analysis of High Resolution Data from CERN and DESY beam tests
6 versions - Latest release: 12 months ago - 56 downloads last month - 0 stars on GitHub - 2 maintainers
blockrs 0.6.1
Encode and decode alignment blocks
7 versions - Latest release: over 5 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 2 maintainers
samsift 0.2.5
SAMsift - sift your alignments
6 versions - Latest release: about 6 years ago - 1 dependent repositories - 55 downloads last month - 21 stars on GitHub - 2 maintainers
linmdtw 0.1.7
A linear memory, exact, parallelizable algorithm for dynamic time warping in arbitrary Euclidean ...
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 50 stars on GitHub - 2 maintainers
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules
15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 51 downloads last month - 2 maintainers
srbpy 0.2.3
A Python/C++ Mixed Road Bridge Design Package
17 versions - Latest release: 4 months ago - 1 dependent repositories - 48 downloads last month - 3 stars on GitHub - 1 maintainer
reveal 0.2.2
Graph based multi genome aligner
2 versions - Latest release: over 4 years ago - 2 dependent repositories - 46 downloads last month - 43 stars on GitHub - 2 maintainers
caretta 0.1.2
Fast multiple protein structure alignment
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 24 stars on GitHub - 2 maintainers
mssw 0.1.5
Modern Cpp binding for complete-striped-smith-watern-library
5 versions - Latest release: over 1 year ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
aligned-treemap 1.0.5
Pure Python implementation of treemap, aligned_treemap, and squarify
3 versions - Latest release: over 4 years ago - 44 downloads last month - 2 stars on GitHub - 1 maintainer
smallgenomeutilities 0.4.0
A collection of scripts that are useful for dealing with viral RNA NGS data.
5 versions - Latest release: 9 months ago - 1 dependent repositories - 44 downloads last month - 10 stars on GitHub - 6 maintainers
binit 0.0.3
Timestamp binning package
3 versions - Latest release: 11 months ago - 37 downloads last month - 1 stars on GitHub - 2 maintainers
stxmalign 0.0.10
Pixel Alignment of STXM images.
4 versions - Latest release: over 6 years ago - 1 dependent repositories - 36 downloads last month - 61 stars on GitHub - 2 maintainers
align1d 2.3.0
A small package for 1d aligment in cuda
5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 2 maintainers
pandas-mpmkp 1.0.9 💰
Powerful data structures for data analysis, time series, and statistics
2 versions - Latest release: about 4 years ago - 1 dependent repositories - 33 downloads last month - 41,864 stars on GitHub - 1 maintainer
bapt 1.1.0
Band alignment plotting tool
2 versions - Latest release: 11 days ago - 1 dependent repositories - 33 downloads last month - 21 stars on GitHub - 1 maintainer
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.
3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
sciencebeam-alignment 0.0.5
ScienceBeam Alignment
5 versions - Latest release: about 4 years ago - 3 dependent repositories - 33 downloads last month - 0 stars on GitHub - 4 maintainers
rich-msa 0.1.0
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
1 version - Latest release: almost 2 years ago - 1 dependent repositories - 33 downloads last month - 75 stars on GitHub - 2 maintainers
Related Keywords
python 46 bioinformatics 41 genomics 19 sequence 17 data-analysis 15 data-science 15 pandas 15 flexible 14 mapping 14 poa 11 cuda 10 gpu 10 nvidia 10 partial-order-alignment 10 python-api 10 registration 8 protein 8 visualization 7 multiple-sequence-alignment 7 deep-learning 7 speech 6 sequence-alignment 6 audio 6 text 5 nlp 5 phylogenetics 5 graph 5 dna 5 synchronization 5 subtitles 5 align 5 python3 5 machine-learning 5 pytorch 5 comparison 4 string 4 sync 4 forced-alignment 4 needleman-wunsch 4 llm 4 biology 4 srt 4 edit-distance 4 levenshtein 4 captions 4 voice-activity-detection 4 NGS 4 ffmpeg 4 string-alignment 3 srt-subtitles 3 speech-detection 3 minimap2 3 subtitle 3 vad 3 video 3 vlc 3 vlc-media-player 3 msa 3 face 3 word 3 metagenomics 3 ai 3 parsing 3 clustering 3 sequencing 3 similarity 3 dtw 3 neuroscience 3 python-library 3 data 3 deep learning 3 caption 3 fast-fourier-transform 3 fft 3 metrics 2 trajectory-analysis 2 benchmark 2 robotics 2 error 2 asr 2 annotation 2 algorithm 2 learning 2 rust 2 machine-translation 2 neuroimaging 2 proteomics 2 assembly 2 astronomy 2 recognition 2 phonology 2 segmentation 2 transcription 2 trimming 2 duration 2 phoneme 2 fine-tuning 2 nlp-library 2 machine 2 translation 2