Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "alignment" keyword

pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
16 versions - Latest release: 3 days ago - 1 dependent repositories - 3.02 thousand downloads last month - 7 stars on GitHub - 2 maintainers
trajectopy 2.0.14
Trajectory Evaluation in Python
43 versions - Latest release: 3 days ago - 838 downloads last month - 21 stars on GitHub - 2 maintainers
trajectopy-core 3.1.0
Trajectory Evaluation in Python
46 versions - Latest release: 3 days ago - 2 dependent packages - 883 downloads last month - 1 stars on GitHub - 2 maintainers
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
8 versions - Latest release: 5 days ago - 2.44 thousand downloads last month - 21 stars on GitHub - 2 maintainers
moexalgo 2.0.0 πŸ’°
Python lib for MOEX AlgoPack data
3 versions - Latest release: 8 days ago - 598 downloads last month - 41,864 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
montreal-forced-aligner 3.0.7
Montreal Forced Aligner is a package for aligning speech corpora using Kaldi functionality.
93 versions - Latest release: 8 days ago - 1 dependent package - 5 dependent repositories - 1.97 thousand downloads last month - 1,124 stars on GitHub - 1 maintainer
thingsvision 2.6.4
Extracting image features from state-of-the-art neural networks for Computer Vision made easy
207 versions - Latest release: 9 days ago - 1 dependent repositories - 2.88 thousand downloads last month - 141 stars on GitHub - 1 maintainer
datadreamer.dev 0.35.0
Prompt. Generate Synthetic Data. Train & Align Models.
34 versions - Latest release: 9 days ago - 1.05 thousand downloads last month - 648 stars on GitHub - 2 maintainers
bapt 1.1.0
Band alignment plotting tool
2 versions - Latest release: 11 days ago - 1 dependent repositories - 33 downloads last month - 21 stars on GitHub - 1 maintainer
sato 0.1.7
Python package that generates consensus sequence from the forward and reverse sequences, performs...
9 versions - Latest release: 11 days ago - 66 downloads last month - 0 stars on GitHub - 2 maintainers
distilabel 1.0.3
AI Feedback (AIF) framework
16 versions - Latest release: 16 days ago - 776 downloads last month - 2 maintainers
textlinebreaker 0.2.0
A module to format strings. Length and alignment of lines can be specified. In the new version is...
4 versions - Latest release: 20 days ago - 1 dependent package - 116 downloads last month - 0 stars on GitHub - 2 maintainers
palamedes 0.0.5
Palamedes: HGVS variants from a sequence alignment
3 versions - Latest release: 22 days ago - 114 downloads last month - 2 stars on GitHub - 2 maintainers
senseppi 0.7.1
SENSE-PPI: Sequence-based EvolutioNary ScalE Protein-Protein Interaction prediction
17 versions - Latest release: 23 days ago - 204 downloads last month - 1,259 stars on GitHub - 1 maintainer
pyfoal 1.0.1
Python forced aligner
6 versions - Latest release: 28 days ago - 1 dependent repositories - 203 downloads last month - 50 stars on GitHub - 1 maintainer
pypar 0.0.6
Python phoneme alignment representation
6 versions - Latest release: 28 days ago - 1 dependent package - 3 dependent repositories - 1.35 thousand downloads last month - 11 stars on GitHub - 2 maintainers
Top 0.1% on pypi.org
pandas 2.2.2 πŸ’°
Powerful data structures for data analysis, time series, and statistics
109 versions - Latest release: about 1 month ago - 17,045 dependent packages - 310,870 dependent repositories - 214 million downloads last month - 40,616 stars on GitHub - 11 maintainers
pdplus 1.5.0 πŸ’°
an new data analysis library add many feature,add duckdb sql functions.so calls: pandas plus
2 versions - Latest release: about 1 month ago - 12 downloads last month - 41,660 stars on GitHub - 2 maintainers
savemoney 0.2.16
Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You!
13 versions - Latest release: about 2 months ago - 194 downloads last month - 9 stars on GitHub - 2 maintainers
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.
9 versions - Latest release: 2 months ago - 25 downloads last month - 9 stars on GitHub - 2 maintainers
kfa 0.2.0
Khmer Forced Aligner powered by Wav2Vec2CTC and Phonetisaurus
10 versions - Latest release: 2 months ago - 175 downloads last month - 1 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
scikit-fda 0.9.1
Functional Data Analysis Python package.
15 versions - Latest release: 2 months ago - 5 dependent packages - 14 dependent repositories - 31.8 thousand downloads last month - 272 stars on GitHub - 2 maintainers
torch-cif 0.2.0
A fast parallel implementation of continuous integrate-and-fire (CIF) https://arxiv.org/abs/1905....
2 versions - Latest release: 3 months ago - 23 downloads last month - 28 stars on GitHub - 1 maintainer
pxblat 1.1.20
A native python binding for blat suite
25 versions - Latest release: 3 months ago - 468 downloads last month - 10 stars on GitHub - 2 maintainers
tanuki.py 0.2.0
The easiest way to build scalable LLM-powered applications, which gets cheaper and faster over time.
6 versions - Latest release: 3 months ago - 1 dependent package - 77 downloads last month - 622 stars on GitHub - 2 maintainers
eda-mds 2.1.8 πŸ’°
EBasic EDA functions implemented
9 versions - Latest release: 3 months ago - 61 downloads last month - 41,864 stars on GitHub - 2 maintainers
deepslice 1.1.7
A package to align histology to 3D brain atlases
16 versions - Latest release: 3 months ago - 674 downloads last month - 67 stars on GitHub - 1 maintainer
pyswrd 0.4.2
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic m...
3 versions - Latest release: 4 months ago - 368 downloads last month - 3 stars on GitHub - 2 maintainers
srbpy 0.2.3
A Python/C++ Mixed Road Bridge Design Package
17 versions - Latest release: 4 months ago - 1 dependent repositories - 48 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
protmapper 0.0.29
Map protein sites to human reference sequence.
27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants
20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
dsbplot 0.1.3
A package for visualizing alignment variations in DNA-seq data from double-strand break (DSB) exp...
3 versions - Latest release: 4 months ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
bible-alignments 0.3.5
Word-level alignments for Bibles, including both automatic alignments and manually corrected alig...
21 versions - Latest release: 4 months ago - 95 downloads last month - 4 stars on GitHub - 2 maintainers
audalign 1.2.4
Audio Alignment and Recognition in Python
27 versions - Latest release: 4 months ago - 1 dependent repositories - 215 downloads last month - 67 stars on GitHub - 1 maintainer
borders 1.2.0
A module to create a frame when printing a list of strings, with control on the alignment of the ...
9 versions - Latest release: 4 months ago - 98 downloads last month - 0 stars on GitHub - 2 maintainers
subaligner 0.3.6
Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-...
29 versions - Latest release: 5 months ago - 1 dependent repositories - 664 downloads last month - 418 stars on GitHub - 2 maintainers
sil-thot 3.4.3
A toolkit for statistical word alignment and machine translation
11 versions - Latest release: 5 months ago - 1 dependent package - 2 dependent repositories - 908 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
monkey-patch.py 0.0.12
NOTE: This project has been moved [HERE](https://pypi.org/project/tanuki.py/)
8 versions - Latest release: 5 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
splam 1.0.10
Splice junction scoring tool
30 versions - Latest release: 6 months ago - 162 downloads last month - 28 stars on GitHub - 2 maintainers
hadal 0.0.3
Tool for mining/alignment parallel texts
3 versions - Latest release: 6 months ago - 19 downloads last month - 1 stars on GitHub - 2 maintainers
molalignlib 1.0.3
A library to align rigid molecules and clusters
12 versions - Latest release: 6 months ago - 8 downloads last month - 6 stars on GitHub - 1 maintainer
parangonar 1.0.0
Symbolic music alignment
8 versions - Latest release: 6 months ago - 1 dependent repositories - 87 downloads last month - 15 stars on GitHub - 1 maintainer
geomapi 0.3.3
A standard library to manage geomatic data
34 versions - Latest release: 7 months ago - 1 dependent repositories - 328 downloads last month - 1 maintainer
clumppling 0.2.0
Clumppling: cluster matching and permutation program with integer linear programming
1 version - Latest release: 7 months ago - 16 downloads last month - 2 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
astroalign 2.5.1
Astrometric Alignment of Images
27 versions - Latest release: 7 months ago - 11 dependent packages - 21 dependent repositories - 2.11 thousand downloads last month - 133 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
pyspoa 0.2.1
Python bindings to spoa
14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
wrilytextaligner 0.10
Aligns text lines and characters within an image
1 version - Latest release: 8 months ago - 15 downloads last month - 0 stars on GitHub - 2 maintainers
biastools 0.0.2
The toolkits to analyze reference bias of short DNA read alignment.
2 versions - Latest release: 8 months ago - 7 downloads last month - 9 stars on GitHub - 1 maintainer
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.
10 versions - Latest release: 8 months ago - 1 dependent package - 599 downloads last month - 5 stars on GitHub - 2 maintainers
Top 9.6% on pypi.org
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam
1 version - Latest release: 9 months ago - 2 dependent repositories - 2 maintainers
msplotter 0.1.37
Make a graphical representation of a blastn alignment
10 versions - Latest release: 9 months ago - 7 downloads last month - 0 stars on GitHub - 2 maintainers
smallgenomeutilities 0.4.0
A collection of scripts that are useful for dealing with viral RNA NGS data.
5 versions - Latest release: 9 months ago - 1 dependent repositories - 44 downloads last month - 10 stars on GitHub - 6 maintainers
disco-generation 1.1.1
A toolkit for distributional control of generative models
4 versions - Latest release: 10 months ago - 20 downloads last month - 67 stars on GitHub - 3 maintainers
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
16 versions - Latest release: 10 months ago - 1 dependent repositories - 1.81 thousand downloads last month - 16 stars on GitHub - 1 maintainer
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.
3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
wisedata 1.0.13 πŸ’°
AI Assistant for Python Data Analytics
14 versions - Latest release: 10 months ago - 119 downloads last month - 41,864 stars on GitHub - 2 maintainers
pandas-xlwt 0.1.1 πŸ’°
Flexible and powerful data analysis / manipulation library for Python, providing labeled data str...
2 versions - Latest release: 10 months ago - 275 downloads last month - 41,864 stars on GitHub - 2 maintainers
datawise 0.0.23 πŸ’°
AI Assistant for Python Data Analytics
11 versions - Latest release: 11 months ago - 16 downloads last month - 41,864 stars on GitHub - 2 maintainers
face-crop-plus 1.1.0
Automatic face aligner and cropper with quality enhancement and attribute parsing.
5 versions - Latest release: 11 months ago - 216 downloads last month - 32 stars on GitHub - 2 maintainers
pywfa 0.5.1
Align sequences using WFA2-lib
9 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 261 downloads last month - 22 stars on GitHub - 1 maintainer
binit 0.0.3
Timestamp binning package
3 versions - Latest release: 11 months ago - 37 downloads last month - 1 stars on GitHub - 2 maintainers
highresanalysis 0.0.7
Analysis of High Resolution Data from CERN and DESY beam tests
6 versions - Latest release: 12 months ago - 56 downloads last month - 0 stars on GitHub - 2 maintainers
leechem 1.2
Code and data access for β€œAnatomy and activity patterns in a multifunctional motor neuron and its...
2 versions - Latest release: about 1 year ago - 3 downloads last month - 1 stars on GitHub - 2 maintainers
Top 3.2% on pypi.org
ffsubsync 0.4.25 πŸ’°
Language-agnostic synchronization of subtitles with video.
29 versions - Latest release: about 1 year ago - 2 dependent packages - 9 dependent repositories - 3.66 thousand downloads last month - 6,339 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
facexlib 0.3.0
Basic face library
16 versions - Latest release: about 1 year ago - 13 dependent packages - 780 dependent repositories - 978 thousand downloads last month - 745 stars on GitHub - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
minineedle 3.1.5
Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects.
15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
edit-distance 1.0.6
Computing edit distance on arbitrary Python sequences.
12 versions - Latest release: about 1 year ago - 9 dependent packages - 21 dependent repositories - 30.5 thousand downloads last month - 100 stars on GitHub - 1 maintainer
minimappers2 0.1.3
A Python wrapper for minimap2-rs
4 versions - Latest release: over 1 year ago - 8 downloads last month - 47 stars on GitHub - 1 maintainer
starsalign 1.1.0
A package for aligning and comparing astronomical images
15 versions - Latest release: over 1 year ago - 97 downloads last month - 4 stars on GitHub - 1 maintainer
baplotter 1.0.0b1 removed
Plotting of band gap alignments for a list of materials. The user can specify the material names,...
3 versions - Latest release: over 1 year ago - 1 maintainer
Top 2.6% on pypi.org
rmsd 1.5.1
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB...
9 versions - Latest release: over 1 year ago - 8 dependent packages - 25 dependent repositories - 16.3 thousand downloads last month - 457 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
dtwalign 0.1.1
Comprehensive DTW package which enables partial mathing and has various constraint options
7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
elastic-tables 0.0.3
Format text using elastic tabstops
3 versions - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
scikit-fda-sim 0.7.1
Functional Data Analysis Python package.
1 version - Latest release: over 1 year ago - 19 downloads last month - 272 stars on GitHub - 2 maintainers
pyalign 0.4.4
Fast and Versatile Alignments for Python
16 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 951 downloads last month - 43 stars on GitHub - 2 maintainers
aligner-pytorch 0.0.19 πŸ’°
Aligner - PyTorch
13 versions - Latest release: over 1 year ago - 75 downloads last month - 1,664 stars on GitHub - 2 maintainers
in-memory-table 1.0.0 πŸ’°
In memory indexed data
1 version - Latest release: over 1 year ago - 26 downloads last month - 41,864 stars on GitHub - 1 maintainer
pydeas 1.0.2 πŸ’°
A simple db package
5 versions - Latest release: over 1 year ago - 17 downloads last month - 41,864 stars on GitHub - 2 maintainers
nmalign 0.0.3
forced alignment of lists of string by fuzzy string matching
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 14 downloads last month - 6 stars on GitHub - 1 maintainer
phonechars 0.1
Extract phonological phylogenetic characters from aligned data
1 version - Latest release: over 1 year ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy
1 version - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 19 stars on GitHub - 2 maintainers
mssw 0.1.5
Modern Cpp binding for complete-striped-smith-watern-library
5 versions - Latest release: over 1 year ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
dnalignment 0.0.6
dna sequence alignment
5 versions - Latest release: over 1 year ago - 21 downloads last month - 1 maintainer
pyicoshift 0.0.3
Python 3 Version of icoshift
1 version - Latest release: over 1 year ago - 17 downloads last month - 3 stars on GitHub - 1 maintainer
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
recan 0.1.5
recan: recombination analysis tool
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 9 stars on GitHub - 2 maintainers
timething 0.0.27
Aligning text transcripts with their audio recordings.
29 versions - Latest release: over 1 year ago - 1 dependent repositories - 178 downloads last month - 64 stars on GitHub - 2 maintainers
alicebob 6.6.6 removed πŸ’°
This package is used for security research and demonstrations. It might contain dangerous code sn...
1 version - Latest release: over 1 year ago - 35,782 stars on GitHub
pandassng 2.1.0 removed πŸ’°
This package is used for security research and demonstrations. It might contain dangerous code sn...
1 version - Latest release: over 1 year ago - 35,782 stars on GitHub
columnify 1.0.1
To create text-based columnized (ls-like) content suitable for console output from a list of strings
5 versions - Latest release: almost 2 years ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
onto-merger 0.1.0
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes,(i.e. ontolog...
1 version - Latest release: almost 2 years ago - 12 downloads last month - 89 stars on GitHub - 2 maintainers
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment
4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
rich-msa 0.1.0
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
1 version - Latest release: almost 2 years ago - 1 dependent repositories - 33 downloads last month - 75 stars on GitHub - 2 maintainers
bialign 0.3
Bialignment of RNAs and proteins
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 2 maintainers
mvirs 1.1.1
mVIRs: Localisation of inducible prophages using NGS data
1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 12 stars on GitHub - 2 maintainers
linmdtw 0.1.7
A linear memory, exact, parallelizable algorithm for dynamic time warping in arbitrary Euclidean ...
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 50 stars on GitHub - 2 maintainers
spruceup 2022.2.4
A module for lexible identification, visualization, and removal of outliers from large multiple s...
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 76 downloads last month - 17 stars on GitHub - 2 maintainers
dmpfold 2.0
Protein structure prediction with the DMPfold2 method
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers