Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "alignment" keyword
spruceup 2022.2.4
A module for lexible identification, visualization, and removal of outliers from large multiple s...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 76 downloads last month - 17 stars on GitHub - 1 maintainer
softalignments 1.0.4
Neural macine translation soft alignment visualisations for web and command line1 version - Latest release: almost 4 years ago - 1 dependent repositories - 17 downloads last month - 72 stars on GitHub - 1 maintainer
smallgenomeutilities 0.4.0
A collection of scripts that are useful for dealing with viral RNA NGS data.5 versions - Latest release: 10 months ago - 1 dependent repositories - 44 downloads last month - 10 stars on GitHub - 3 maintainers
simple-face-alignment 0.0.2
a simple implmentation for face align2 versions - Latest release: over 3 years ago - 1 dependent repositories - 16 downloads last month - 1 stars on GitHub - 1 maintainer
seq-tools 1.0.10
Python tools for working with biological sequence data5 versions - Latest release: over 6 years ago - 1 dependent repositories - 86 downloads last month - 1 stars on GitHub - 1 maintainer
seqpipe 0.0.7
Sequencing pipeline5 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 1 maintainer
seqanpy 0.2
Fast pairwise sequence alignment using SeqAn1 version - Latest release: almost 7 years ago - 1 dependent repositories - 11 downloads last month - 13 stars on GitHub - 1 maintainer
sciencebeam-alignment 0.0.5
ScienceBeam Alignment5 versions - Latest release: about 4 years ago - 3 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
samsift 0.2.5
SAMsift - sift your alignments6 versions - Latest release: about 6 years ago - 1 dependent repositories - 55 downloads last month - 21 stars on GitHub - 1 maintainer
sam-alignment-reconstructor 0.0.5
SAM Alignment Reconstructor3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
reveal 0.2.2
Graph based multi genome aligner2 versions - Latest release: over 4 years ago - 2 dependent repositories - 46 downloads last month - 43 stars on GitHub - 1 maintainer
pyprot 0.1-alpha
Python Proteins1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 1 maintainer
pyclaragenomics-cuda-10-0 0.4.3
NVIDIA genomics python libraries and utiliites2 versions - Latest release: over 4 years ago - 1 dependent repositories - 6 downloads last month - 275 stars on GitHub - 1 maintainer
pyclaragenomics-cuda-10-1 0.4.3
NVIDIA genomics python libraries and utiliites2 versions - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 273 stars on GitHub - 1 maintainer
pyalign 0.4.4
Fast and Versatile Alignments for Python16 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 951 downloads last month - 43 stars on GitHub - 1 maintainer
pyaliner 0.1.2
A library for comparing sequential data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
protparcon 3.1
ProtParCon - A framework for framework for processing molecular data and identifying parallel and...4 versions - Latest release: about 5 years ago - 1 dependent repositories - 30 downloads last month - 4 stars on GitHub - 1 maintainer
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.21 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 1 maintainer
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas6 versions - Latest release: about 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 1 maintainer
pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files5 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 31 stars on GitHub - 1 maintainer
nwalign 0.3.1
Needleman-Wunsch global sequence alignment7 versions - Latest release: over 14 years ago - 8 dependent repositories - 97 downloads last month - 1 maintainer
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment4 versions - Latest release: about 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 1 maintainer
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 1 maintainer
metameta 0.0.0.66
Toolkit for analyzing meta-transcriptome/metagenome mapping data63 versions - Latest release: over 7 years ago - 2 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
metalogo 1.1.1
MetaLogo is a heterogeneity-aware sequence logo generator and aligner5 versions - Latest release: over 2 years ago - 2 dependent repositories - 24 downloads last month - 17 stars on GitHub - 1 maintainer
matchtools 0.1.2
A set of tools for data matching and manipulation3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 5 stars on GitHub - 1 maintainer
linmdtw 0.1.7
A linear memory, exact, parallelizable algorithm for dynamic time warping in arbitrary Euclidean ...7 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 50 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
1 version - Latest release: 9 months ago - 2 dependent repositories - 1 maintainer
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam1 version - Latest release: 9 months ago - 2 dependent repositories - 1 maintainer
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites150 versions - Latest release: over 3 years ago - 1 dependent repositories - 692 downloads last month - 276 stars on GitHub - 1 maintainer
genomeworks-cuda-10-0 2021.2.0
NVIDIA genomics python libraries and utiliites221 versions - Latest release: about 3 years ago - 1 dependent repositories - 2 thousand downloads last month - 276 stars on GitHub - 1 maintainer
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites224 versions - Latest release: about 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 1 maintainer
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 1 maintainer
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: about 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 1 maintainer
genomeworks 0.0.0
NVIDIA genomics python libraries and utilities1 version - Latest release: about 4 years ago - 1 dependent repositories - 9 downloads last month - 276 stars on GitHub - 1 maintainer
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 1 maintainer
ffsubs 0.3.3 💰
Language-agnostic synchronization of subtitles with video via speech detection, and other subtitl...1 version - Latest release: about 4 years ago - 1 dependent repositories - 11 downloads last month - 6,513 stars on GitHub - 1 maintainer
enpc-aligner 1.0.5
Library of alignment of translated texts in differents languages6 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
docoskin 0.1.0
"Onion-skin" visual differences between a reference document image and a scanned copy1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 1 maintainer
savemoney 0.2.16
Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You!13 versions - Latest release: 2 months ago - 194 downloads last month - 9 stars on GitHub - 1 maintainer
caretta 0.1.2
Fast multiple protein structure alignment3 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 24 stars on GitHub - 1 maintainer
blockrs 0.6.1
Encode and decode alignment blocks7 versions - Latest release: over 5 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 1 maintainer
binit 0.0.3
Timestamp binning package3 versions - Latest release: 12 months ago - 37 downloads last month - 1 stars on GitHub - 1 maintainer
bialign 0.3
Bialignment of RNAs and proteins7 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 1 maintainer
msa-cigars 0.0.1
To return CIGAR strings of a multiple sequences alignment1 version - Latest release: almost 6 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
19 versions - Latest release: over 5 years ago - 4 dependent repositories - 779 downloads last month - 100 stars on GitHub - 1 maintainer
asr_evaluation 2.0.4
Evaluating ASR (automatic speech recognition) hypotheses, i.e. computing word error rate.19 versions - Latest release: over 5 years ago - 4 dependent repositories - 779 downloads last month - 100 stars on GitHub - 1 maintainer
torch-cif 0.2.0
A fast parallel implementation of continuous integrate-and-fire (CIF) https://arxiv.org/abs/1905....2 versions - Latest release: 3 months ago - 23 downloads last month - 28 stars on GitHub - 1 maintainer
columnify 1.0.1
To create text-based columnized (ls-like) content suitable for console output from a list of strings5 versions - Latest release: almost 2 years ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
audalign 1.2.4
Audio Alignment and Recognition in Python27 versions - Latest release: 5 months ago - 1 dependent repositories - 215 downloads last month - 67 stars on GitHub - 1 maintainer
parangonar 1.0.0
Symbolic music alignment8 versions - Latest release: 7 months ago - 1 dependent repositories - 87 downloads last month - 15 stars on GitHub - 1 maintainer
pyicoshift 0.0.3
Python 3 Version of icoshift1 version - Latest release: over 1 year ago - 17 downloads last month - 3 stars on GitHub - 1 maintainer
aligned-treemap 1.0.5
Pure Python implementation of treemap, aligned_treemap, and squarify3 versions - Latest release: over 4 years ago - 44 downloads last month - 2 stars on GitHub - 1 maintainer
text-alignment-tool 0.2.15
A tool for performing complex text alignment processes.18 versions - Latest release: over 2 years ago - 1 dependent repositories - 156 downloads last month - 1 stars on GitLab.com - 1 maintainer
Top 7.3% on pypi.org
7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
dtwalign 0.1.1
Comprehensive DTW package which enables partial mathing and has various constraint options7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
hladownload 0.0.5
Python command line program and module for retrieving HLA alleles, frequencies and eplets.7 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
Top 3.2% on pypi.org
29 versions - Latest release: about 1 year ago - 2 dependent packages - 9 dependent repositories - 3.66 thousand downloads last month - 6,339 stars on GitHub - 1 maintainer
ffsubsync 0.4.25 💰
Language-agnostic synchronization of subtitles with video.29 versions - Latest release: about 1 year ago - 2 dependent packages - 9 dependent repositories - 3.66 thousand downloads last month - 6,339 stars on GitHub - 1 maintainer
alignlib-lite 0.2.3
alignlib-lite - simple wrapper around alignlib C++ library for sequence alignment5 versions - Latest release: almost 10 years ago - 4 dependent repositories - 28 downloads last month - 1 maintainer
astred 0.9.7
A collection of syntactic metrics to calculate (dis)similarities between source and target senten...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 117 downloads last month - 17 stars on GitHub - 1 maintainer
bapt 1.1.0
Band alignment plotting tool2 versions - Latest release: 23 days ago - 1 dependent repositories - 33 downloads last month - 21 stars on GitHub - 1 maintainer
arbow 0.6.0
Cultivate your MSA to get better trees15 versions - Latest release: about 4 years ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
starsalign 1.1.0
A package for aligning and comparing astronomical images15 versions - Latest release: over 1 year ago - 97 downloads last month - 4 stars on GitHub - 1 maintainer
search-kwic 0.2
Tool for KWIC representation of paralleltext. Find a word in the parallel text corresponding to q...1 version - Latest release: almost 6 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data8 versions - Latest release: over 4 years ago - 1 dependent repositories - 88 downloads last month - 12 stars on GitHub - 1 maintainer
geomapi 0.3.3
A standard library to manage geomatic data34 versions - Latest release: 7 months ago - 1 dependent repositories - 328 downloads last month - 1 maintainer
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
baplotter 1.0.0b1 removed
Plotting of band gap alignments for a list of materials. The user can specify the material names,...3 versions - Latest release: over 1 year ago - 1 maintainer
Related Keywords
python
46
bioinformatics
41
genomics
19
sequence
17
pandas
15
data-science
15
data-analysis
15
mapping
14
flexible
14
poa
11
cuda
10
gpu
10
nvidia
10
partial-order-alignment
10
python-api
10
protein
8
registration
8
deep-learning
7
visualization
7
multiple-sequence-alignment
7
speech
6
sequence-alignment
6
audio
6
synchronization
5
pytorch
5
machine-learning
5
phylogenetics
5
subtitles
5
dna
5
text
5
graph
5
python3
5
align
5
nlp
5
NGS
4
edit-distance
4
biology
4
forced-alignment
4
sync
4
voice-activity-detection
4
levenshtein
4
ffmpeg
4
srt
4
captions
4
llm
4
comparison
4
needleman-wunsch
4
string
4
srt-subtitles
3
subtitle
3
speech-detection
3
string-alignment
3
vad
3
video
3
vlc
3
vlc-media-player
3
clustering
3
msa
3
python-library
3
word
3
similarity
3
neuroscience
3
minimap2
3
parsing
3
face
3
dtw
3
data
3
sequencing
3
ai
3
deep learning
3
metagenomics
3
fft
3
fast-fourier-transform
3
caption
3
dynamic time warping
2
spliced-alignment
2
trajectory-analysis
2
neuroimaging
2
metrics
2
quality-control
2
benchmark
2
robotics
2
image-processing
2
compare
2
translation
2
epsg
2
processing
2
leverarm
2
pairwise
2
opal
2
evaluation
2
cython-library
2
scikits
2
tts
2
cli
2
TTS
2
error
2
stxm
2
rmsd
2
command-line
2