Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "ngs-analysis" keyword
Top 3.8% on pypi.org
26 versions - Latest release: about 1 month ago - 8 dependent packages - 5 dependent repositories - 234 thousand downloads last month - 163 stars on GitHub - 3 maintainers
bioframe 0.6.4
Operations and utilities for Genomic Interval Dataframes.26 versions - Latest release: about 1 month ago - 8 dependent packages - 5 dependent repositories - 234 thousand downloads last month - 163 stars on GitHub - 3 maintainers
aminoextract 0.3.1
AminoExtract is an application to extract aminoacid sequences from a fasta file based on a GFF.5 versions - Latest release: 8 months ago - 54 downloads last month - 1 stars on GitHub - 2 maintainers
liftover-bam 0.1.0
A simple module to liftover bam alignments1 version - Latest release: almost 2 years ago - 15 downloads last month - 0 stars on GitHub - 1 maintainer
seqtables 0.11
Package for efficient analysis of next generation sequencing amplicon data using numpy and datafr...2 versions - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 5 stars on GitHub - 1 maintainer
pm4ngs 0.0.21
PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data an...19 versions - Latest release: over 1 year ago - 1 dependent repositories - 151 downloads last month - 25 stars on GitHub - 1 maintainer
ngs-toolkit 0.25.1
A toolkit for NGS analysis with Python.31 versions - Latest release: over 3 years ago - 1 dependent repositories - 170 downloads last month - 13 stars on GitHub - 1 maintainer
crispr-cas9 0.3.4
script for indels counting in sequencing data6 versions - Latest release: almost 3 years ago - 1 dependent repositories - 23 downloads last month - 4 stars on GitHub - 1 maintainer
apobec 0.6
scripts for mutations counting in deep sequencing data6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 46 downloads last month - 2 stars on GitHub - 1 maintainer
screenpro2 0.3.0
Flexible analysis of high-content CRISPR screening16 versions - Latest release: 3 days ago - 343 downloads last month - 7 stars on GitHub - 1 maintainer
htseq-clip 2.19.0b0
htseq-clip: a toolset for the analysis of eCLIP/iCLIP datasets13 versions - Latest release: about 1 year ago - 1 dependent repositories - 118 downloads last month - 3 stars on GitHub - 1 maintainer
ampligone 1.3.1
Ampligone is a tool which accurately removes primer sequences from FastQ NGS reads in an amplicon...9 versions - Latest release: about 1 month ago - 65 downloads last month - 8 stars on GitHub - 3 maintainers
compytool 0.2.5 removed
A Python based tool to compare .bam and .vcf files using a SQLite3 database8 versions - Latest release: over 2 years ago - 45 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
8
python
3
numpy
2
dataframe
2
python3
2
sequencing
2
crispr-cas9
2
NGS
2
pandas
2
rna-seq
2
virology
2
dna-sequences
1
mutation
1
apobec
1
fasta
1
hbv
1
quality-control
1
deep-sequencing
1
indels
1
pypiper
1
project-management
1
looper
1
chip-seq
1
atac-seq
1
project management
1
RNA-seq
1
overview
1
database-comparison
1
bioinfomatics
1
rivm
1
pcr
1
nanopore
1
illumina
1
amplicon-sequencing
1
eclip
1
sequencing-data
1
phenotypes
1
perturbation-screen
1
crispr-cas12
1
crispr-analysis
1
crispr
1
visualization
1
sequence-alignment
1
hbv-mutations
1
variant analysis
1
amplicon
1
protein engineering
1
Next generation sequencing
1
dna-seq
1
bam-files
1
spatial-join
1
genomic-ranges
1
genomic-intervals
1
dataframes
1
viewframe
1
interval operations
1
genomics
1
genomic ranges
1
epigenomics
1
bedtools
1
bedframe
1
bed
1
ChIP-seq
1
ATAC-Seq
1
ngs analysis
1
ngs
1
rnaseq
1
ngs-pipeline
1
next-generation-sequencing
1
cwl-workflow
1
chipseq
1
chipexo
1
Biocontainers
1
protein
1
plotly
1
ngstools
1
dna
1
aligned-sequences
1
enrichment
1
sequence logo
1