Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "alignment" keyword

Top 3.1% on pypi.org
aeneas 1.7.3.0
aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka ...
15 versions - Latest release: about 7 years ago - 2 dependent packages - 18 dependent repositories - 2.49 thousand downloads last month - 2,375 stars on GitHub - 1 maintainer
alicebob 6.6.6 removed πŸ’°
This package is used for security research and demonstrations. It might contain dangerous code sn...
1 version - Latest release: over 1 year ago - 35,782 stars on GitHub
align1d 2.3.0
A small package for 1d aligment in cuda
5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 2 maintainers
align-benchmark 0.1.1
Benchmark tests for dualtext alignment
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
aligned-treemap 1.0.5
Pure Python implementation of treemap, aligned_treemap, and squarify
3 versions - Latest release: over 4 years ago - 44 downloads last month - 2 stars on GitHub - 1 maintainer
aligner-pytorch 0.0.19 πŸ’°
Aligner - PyTorch
13 versions - Latest release: over 1 year ago - 75 downloads last month - 1,664 stars on GitHub - 2 maintainers
alignlib-lite 0.2.3
alignlib-lite - simple wrapper around alignlib C++ library for sequence alignment
5 versions - Latest release: almost 10 years ago - 4 dependent repositories - 28 downloads last month - 1 maintainer
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python
17 versions - Latest release: about 5 years ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 1 maintainer
alignqc 2.0.5
Python and R based tool for assessing the quality of alignments
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 45 stars on GitHub - 1 maintainer
arbow 0.6.0
Cultivate your MSA to get better trees
15 versions - Latest release: almost 4 years ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
Top 7.1% on pypi.org
asr_evaluation 2.0.4
Evaluating ASR (automatic speech recognition) hypotheses, i.e. computing word error rate.
19 versions - Latest release: over 5 years ago - 4 dependent repositories - 779 downloads last month - 100 stars on GitHub - 1 maintainer
astred 0.9.7
A collection of syntactic metrics to calculate (dis)similarities between source and target senten...
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 117 downloads last month - 17 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
astroalign 2.5.1
Astrometric Alignment of Images
27 versions - Latest release: 7 months ago - 11 dependent packages - 21 dependent repositories - 2.11 thousand downloads last month - 133 stars on GitHub - 1 maintainer
audalign 1.2.4
Audio Alignment and Recognition in Python
27 versions - Latest release: 4 months ago - 1 dependent repositories - 215 downloads last month - 67 stars on GitHub - 1 maintainer
baplotter 1.0.0b1 removed
Plotting of band gap alignments for a list of materials. The user can specify the material names,...
3 versions - Latest release: over 1 year ago - 1 maintainer
bapt 1.1.0
Band alignment plotting tool
2 versions - Latest release: 11 days ago - 1 dependent repositories - 33 downloads last month - 21 stars on GitHub - 1 maintainer
bialign 0.3
Bialignment of RNAs and proteins
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 2 maintainers
biastools 0.0.2
The toolkits to analyze reference bias of short DNA read alignment.
2 versions - Latest release: 8 months ago - 7 downloads last month - 9 stars on GitHub - 1 maintainer
bible-alignments 0.3.5
Word-level alignments for Bibles, including both automatic alignments and manually corrected alig...
21 versions - Latest release: 4 months ago - 95 downloads last month - 4 stars on GitHub - 2 maintainers
binit 0.0.3
Timestamp binning package
3 versions - Latest release: 11 months ago - 37 downloads last month - 1 stars on GitHub - 2 maintainers
blockrs 0.6.1
Encode and decode alignment blocks
7 versions - Latest release: over 5 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 2 maintainers
borders 1.2.0
A module to create a frame when printing a list of strings, with control on the alignment of the ...
9 versions - Latest release: 4 months ago - 98 downloads last month - 0 stars on GitHub - 2 maintainers
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...
14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
caretta 0.1.2
Fast multiple protein structure alignment
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 24 stars on GitHub - 2 maintainers
clumppling 0.2.0
Clumppling: cluster matching and permutation program with integer linear programming
1 version - Latest release: 7 months ago - 16 downloads last month - 2 stars on GitHub - 2 maintainers
columnify 1.0.1
To create text-based columnized (ls-like) content suitable for console output from a list of strings
5 versions - Latest release: almost 2 years ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data
8 versions - Latest release: over 4 years ago - 1 dependent repositories - 88 downloads last month - 12 stars on GitHub - 1 maintainer
datadreamer.dev 0.35.0
Prompt. Generate Synthetic Data. Train & Align Models.
34 versions - Latest release: 9 days ago - 1.05 thousand downloads last month - 648 stars on GitHub - 2 maintainers
datawise 0.0.23 πŸ’°
AI Assistant for Python Data Analytics
11 versions - Latest release: 11 months ago - 16 downloads last month - 41,864 stars on GitHub - 2 maintainers
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules
15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 51 downloads last month - 2 maintainers
deepslice 1.1.7
A package to align histology to 3D brain atlases
16 versions - Latest release: 3 months ago - 674 downloads last month - 67 stars on GitHub - 1 maintainer
disco-generation 1.1.1
A toolkit for distributional control of generative models
4 versions - Latest release: 10 months ago - 20 downloads last month - 67 stars on GitHub - 3 maintainers
distilabel 1.0.3
AI Feedback (AIF) framework
16 versions - Latest release: 16 days ago - 776 downloads last month - 2 maintainers
dmpfold 2.0
Protein structure prediction with the DMPfold2 method
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers
dnalignment 0.0.6
dna sequence alignment
5 versions - Latest release: over 1 year ago - 21 downloads last month - 1 maintainer
docoskin 0.1.0
"Onion-skin" visual differences between a reference document image and a scanned copy
1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 2 maintainers
dsbplot 0.1.3
A package for visualizing alignment variations in DNA-seq data from double-strand break (DSB) exp...
3 versions - Latest release: 4 months ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
dtwalign 0.1.1
Comprehensive DTW package which enables partial mathing and has various constraint options
7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
eda-mds 2.1.8 πŸ’°
EBasic EDA functions implemented
9 versions - Latest release: 3 months ago - 61 downloads last month - 41,864 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
edit-distance 1.0.6
Computing edit distance on arbitrary Python sequences.
12 versions - Latest release: about 1 year ago - 9 dependent packages - 21 dependent repositories - 30.5 thousand downloads last month - 100 stars on GitHub - 1 maintainer
elastic-tables 0.0.3
Format text using elastic tabstops
3 versions - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
enpc-aligner 1.0.5
Library of alignment of translated texts in differents languages
6 versions - Latest release: about 6 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 2 maintainers
face-crop-plus 1.1.0
Automatic face aligner and cropper with quality enhancement and attribute parsing.
5 versions - Latest release: 11 months ago - 216 downloads last month - 32 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
facexlib 0.3.0
Basic face library
16 versions - Latest release: about 1 year ago - 13 dependent packages - 780 dependent repositories - 978 thousand downloads last month - 745 stars on GitHub - 2 maintainers
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.
9 versions - Latest release: 2 months ago - 25 downloads last month - 9 stars on GitHub - 2 maintainers
ffsubs 0.3.3 πŸ’°
Language-agnostic synchronization of subtitles with video via speech detection, and other subtitl...
1 version - Latest release: about 4 years ago - 1 dependent repositories - 11 downloads last month - 6,513 stars on GitHub - 2 maintainers
Top 3.2% on pypi.org
ffsubsync 0.4.25 πŸ’°
Language-agnostic synchronization of subtitles with video.
29 versions - Latest release: about 1 year ago - 2 dependent packages - 9 dependent repositories - 3.66 thousand downloads last month - 6,339 stars on GitHub - 1 maintainer
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...
3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 2 maintainers
genomeworks 0.0.0
NVIDIA genomics python libraries and utilities
1 version - Latest release: almost 4 years ago - 1 dependent repositories - 9 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-10-0 2021.2.0
NVIDIA genomics python libraries and utiliites
221 versions - Latest release: about 3 years ago - 1 dependent repositories - 2 thousand downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites
224 versions - Latest release: almost 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites
104 versions - Latest release: almost 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 479 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 2 maintainers
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites
150 versions - Latest release: over 3 years ago - 1 dependent repositories - 865 downloads last month - 273 stars on GitHub - 2 maintainers
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites
155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 2 maintainers
geomapi 0.3.3
A standard library to manage geomatic data
34 versions - Latest release: 7 months ago - 1 dependent repositories - 328 downloads last month - 1 maintainer
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.
3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
hadal 0.0.3
Tool for mining/alignment parallel texts
3 versions - Latest release: 6 months ago - 19 downloads last month - 1 stars on GitHub - 2 maintainers
highresanalysis 0.0.7
Analysis of High Resolution Data from CERN and DESY beam tests
6 versions - Latest release: 12 months ago - 56 downloads last month - 0 stars on GitHub - 2 maintainers
hladownload 0.0.5
Python command line program and module for retrieving HLA alleles, frequencies and eplets.
7 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam
1 version - Latest release: 9 months ago - 2 dependent repositories - 2 maintainers
in-memory-table 1.0.0 πŸ’°
In memory indexed data
1 version - Latest release: over 1 year ago - 26 downloads last month - 41,864 stars on GitHub - 1 maintainer
kfa 0.2.0
Khmer Forced Aligner powered by Wav2Vec2CTC and Phonetisaurus
10 versions - Latest release: 2 months ago - 175 downloads last month - 1 stars on GitHub - 2 maintainers
leechem 1.2
Code and data access for β€œAnatomy and activity patterns in a multifunctional motor neuron and its...
2 versions - Latest release: about 1 year ago - 3 downloads last month - 1 stars on GitHub - 2 maintainers
linmdtw 0.1.7
A linear memory, exact, parallelizable algorithm for dynamic time warping in arbitrary Euclidean ...
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 50 stars on GitHub - 2 maintainers
malign 0.3.2
Library for multiple asymmetric alignments on different alphabets
6 versions - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.
10 versions - Latest release: 8 months ago - 1 dependent package - 599 downloads last month - 5 stars on GitHub - 2 maintainers
matchtools 0.1.2
A set of tools for data matching and manipulation
3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 5 stars on GitHub - 2 maintainers
metalogo 1.1.1
MetaLogo is a heterogeneity-aware sequence logo generator and aligner
5 versions - Latest release: over 2 years ago - 2 dependent repositories - 24 downloads last month - 17 stars on GitHub - 2 maintainers
metameta 0.0.0.66
Toolkit for analyzing meta-transcriptome/metagenome mapping data
63 versions - Latest release: over 7 years ago - 2 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy
1 version - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 19 stars on GitHub - 2 maintainers
minimappers2 0.1.3
A Python wrapper for minimap2-rs
4 versions - Latest release: over 1 year ago - 8 downloads last month - 47 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
minineedle 3.1.5
Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects.
15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
moexalgo 2.0.0 πŸ’°
Python lib for MOEX AlgoPack data
3 versions - Latest release: 8 days ago - 598 downloads last month - 41,864 stars on GitHub - 2 maintainers
molalignlib 1.0.3
A library to align rigid molecules and clusters
12 versions - Latest release: 6 months ago - 8 downloads last month - 6 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
monkey-patch.py 0.0.12
NOTE: This project has been moved [HERE](https://pypi.org/project/tanuki.py/)
8 versions - Latest release: 6 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
montreal-forced-aligner 3.0.7
Montreal Forced Aligner is a package for aligning speech corpora using Kaldi functionality.
93 versions - Latest release: 8 days ago - 1 dependent package - 5 dependent repositories - 1.97 thousand downloads last month - 1,124 stars on GitHub - 1 maintainer
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
msa-cigars 0.0.1
To return CIGAR strings of a multiple sequences alignment
1 version - Latest release: over 5 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
msplotter 0.1.37
Make a graphical representation of a blastn alignment
10 versions - Latest release: 9 months ago - 7 downloads last month - 0 stars on GitHub - 2 maintainers
mssw 0.1.5
Modern Cpp binding for complete-striped-smith-watern-library
5 versions - Latest release: over 1 year ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants
20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
mvirs 1.1.1
mVIRs: Localisation of inducible prophages using NGS data
1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 12 stars on GitHub - 2 maintainers
nmalign 0.0.3
forced alignment of lists of string by fuzzy string matching
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 14 downloads last month - 6 stars on GitHub - 1 maintainer
nwalign 0.3.1
Needleman-Wunsch global sequence alignment
7 versions - Latest release: over 14 years ago - 8 dependent repositories - 97 downloads last month - 2 maintainers
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment
4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
onto-merger 0.1.0
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes,(i.e. ontolog...
1 version - Latest release: almost 2 years ago - 12 downloads last month - 89 stars on GitHub - 2 maintainers
pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 31 stars on GitHub - 2 maintainers
palamedes 0.0.5
Palamedes: HGVS variants from a sequence alignment
3 versions - Latest release: 23 days ago - 114 downloads last month - 2 stars on GitHub - 2 maintainers
Top 0.1% on pypi.org
pandas 2.2.2 πŸ’°
Powerful data structures for data analysis, time series, and statistics
109 versions - Latest release: about 1 month ago - 17,045 dependent packages - 310,870 dependent repositories - 214 million downloads last month - 40,616 stars on GitHub - 11 maintainers
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas
6 versions - Latest release: almost 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 2 maintainers
pandas-mpmkp 1.0.9 πŸ’°
Powerful data structures for data analysis, time series, and statistics
2 versions - Latest release: about 4 years ago - 1 dependent repositories - 33 downloads last month - 41,864 stars on GitHub - 1 maintainer
pandassng 2.1.0 removed πŸ’°
This package is used for security research and demonstrations. It might contain dangerous code sn...
1 version - Latest release: over 1 year ago - 35,782 stars on GitHub
pandas-xlwt 0.1.1 πŸ’°
Flexible and powerful data analysis / manipulation library for Python, providing labeled data str...
2 versions - Latest release: 10 months ago - 275 downloads last month - 41,864 stars on GitHub - 2 maintainers
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.
21 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 2 maintainers
parangonar 1.0.0
Symbolic music alignment
8 versions - Latest release: 6 months ago - 1 dependent repositories - 87 downloads last month - 15 stars on GitHub - 1 maintainer
pdplus 1.5.0 πŸ’°
an new data analysis library add many feature,add duckdb sql functions.so calls: pandas plus
2 versions - Latest release: about 1 month ago - 12 downloads last month - 41,660 stars on GitHub - 2 maintainers