Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "alignment" keyword

Top 0.1% on pypi.org
pandas 2.2.2 💰
Powerful data structures for data analysis, time series, and statistics
109 versions - Latest release: about 1 month ago - 17,045 dependent packages - 310,870 dependent repositories - 214 million downloads last month - 40,616 stars on GitHub - 11 maintainers
Top 1.6% on pypi.org
facexlib 0.3.0
Basic face library
16 versions - Latest release: about 1 year ago - 13 dependent packages - 780 dependent repositories - 978 thousand downloads last month - 745 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
stringdist 1.0.9
This package provides the stringdist module, which includes several functions for calculating str...
4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 16 thousand downloads last month - 16 stars on GitHub - 2 maintainers
Top 2.6% on pypi.org
rmsd 1.5.1
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB...
9 versions - Latest release: over 1 year ago - 8 dependent packages - 25 dependent repositories - 16.3 thousand downloads last month - 457 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
edit-distance 1.0.6
Computing edit distance on arbitrary Python sequences.
12 versions - Latest release: about 1 year ago - 9 dependent packages - 21 dependent repositories - 30.5 thousand downloads last month - 100 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
astroalign 2.5.1
Astrometric Alignment of Images
27 versions - Latest release: 7 months ago - 11 dependent packages - 21 dependent repositories - 2.11 thousand downloads last month - 133 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
aeneas 1.7.3.0
aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka ...
15 versions - Latest release: about 7 years ago - 2 dependent packages - 18 dependent repositories - 2.49 thousand downloads last month - 2,375 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
scikit-fda 0.9.1
Functional Data Analysis Python package.
15 versions - Latest release: 3 months ago - 5 dependent packages - 14 dependent repositories - 31.8 thousand downloads last month - 272 stars on GitHub - 2 maintainers
Top 3.2% on pypi.org
ffsubsync 0.4.25 💰
Language-agnostic synchronization of subtitles with video.
29 versions - Latest release: about 1 year ago - 2 dependent packages - 9 dependent repositories - 3.66 thousand downloads last month - 6,339 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
protmapper 0.0.29
Map protein sites to human reference sequence.
27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
nwalign 0.3.1
Needleman-Wunsch global sequence alignment
7 versions - Latest release: over 14 years ago - 8 dependent repositories - 97 downloads last month - 2 maintainers
Top 4.7% on pypi.org
montreal-forced-aligner 3.0.7
Montreal Forced Aligner is a package for aligning speech corpora using Kaldi functionality.
93 versions - Latest release: 9 days ago - 1 dependent package - 5 dependent repositories - 1.97 thousand downloads last month - 1,124 stars on GitHub - 1 maintainer
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.
3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment
4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
alignlib-lite 0.2.3
alignlib-lite - simple wrapper around alignlib C++ library for sequence alignment
5 versions - Latest release: almost 10 years ago - 4 dependent repositories - 28 downloads last month - 1 maintainer
Top 8.5% on pypi.org
pyspoa 0.2.1
Python bindings to spoa
14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
Top 7.1% on pypi.org
asr_evaluation 2.0.4
Evaluating ASR (automatic speech recognition) hypotheses, i.e. computing word error rate.
19 versions - Latest release: over 5 years ago - 4 dependent repositories - 779 downloads last month - 100 stars on GitHub - 1 maintainer
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas
6 versions - Latest release: almost 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 2 maintainers
pypar 0.0.6
Python phoneme alignment representation
6 versions - Latest release: 29 days ago - 1 dependent package - 3 dependent repositories - 1.35 thousand downloads last month - 11 stars on GitHub - 2 maintainers
sciencebeam-alignment 0.0.5
ScienceBeam Alignment
5 versions - Latest release: about 4 years ago - 3 dependent repositories - 33 downloads last month - 0 stars on GitHub - 4 maintainers
Top 7.3% on pypi.org
dtwalign 0.1.1
Comprehensive DTW package which enables partial mathing and has various constraint options
7 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 600 downloads last month - 102 stars on GitHub - 1 maintainer
ultra-bioinformatics 0.0.4
Splice aligner of long transcriptomic reads to genome.
14 versions - Latest release: over 2 years ago - 2 dependent repositories - 99 downloads last month - 56 stars on GitHub - 2 maintainers
tssv 1.1.2
Targeted characterisation of short structural variation.
24 versions - Latest release: over 2 years ago - 2 dependent repositories - 367 downloads last month - 2 stars on GitHub - 2 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
minineedle 3.1.5
Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects.
15 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 2 maintainers
Top 8.5% on pypi.org
monkey-patch.py 0.0.12
NOTE: This project has been moved [HERE](https://pypi.org/project/tanuki.py/)
8 versions - Latest release: 6 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
metalogo 1.1.1
MetaLogo is a heterogeneity-aware sequence logo generator and aligner
5 versions - Latest release: over 2 years ago - 2 dependent repositories - 24 downloads last month - 17 stars on GitHub - 2 maintainers
sil-thot 3.4.3
A toolkit for statistical word alignment and machine translation
11 versions - Latest release: 5 months ago - 1 dependent package - 2 dependent repositories - 908 downloads last month - 0 stars on GitHub - 1 maintainer
reveal 0.2.2
Graph based multi genome aligner
2 versions - Latest release: over 4 years ago - 2 dependent repositories - 46 downloads last month - 43 stars on GitHub - 2 maintainers
metameta 0.0.0.66
Toolkit for analyzing meta-transcriptome/metagenome mapping data
63 versions - Latest release: over 7 years ago - 2 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.6% on pypi.org
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam
1 version - Latest release: 9 months ago - 2 dependent repositories - 2 maintainers
genomeworks-cuda-10-1 2021.2.2
NVIDIA genomics python libraries and utiliites
224 versions - Latest release: almost 3 years ago - 1 dependent repositories - 1.62 thousand downloads last month - 276 stars on GitHub - 2 maintainers
privat24-business-python-sdk 0.0.1 💰
Privat24 for Business Python SDK
1 version - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 41,864 stars on GitHub - 1 maintainer
pyfoal 1.0.1
Python forced aligner
6 versions - Latest release: 29 days ago - 1 dependent repositories - 203 downloads last month - 50 stars on GitHub - 1 maintainer
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules
15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 51 downloads last month - 2 maintainers
srbpy 0.2.3
A Python/C++ Mixed Road Bridge Design Package
17 versions - Latest release: 4 months ago - 1 dependent repositories - 48 downloads last month - 3 stars on GitHub - 1 maintainer
pywfa 0.5.1
Align sequences using WFA2-lib
9 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 261 downloads last month - 22 stars on GitHub - 1 maintainer
pyclaragenomics-cuda-10-0 0.4.3
NVIDIA genomics python libraries and utiliites
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 6 downloads last month - 275 stars on GitHub - 2 maintainers
py-goicp 0.0.4
GO-ICP compiled using Cython to use in python
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 113 stars on GitHub - 2 maintainers
alignqc 2.0.5
Python and R based tool for assessing the quality of alignments
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 45 stars on GitHub - 1 maintainer
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 2 maintainers
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 479 downloads last month - 276 stars on GitHub - 2 maintainers
genomeworks-cuda-11-1 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 995 downloads last month - 273 stars on GitHub - 2 maintainers
thingsvision 2.6.4
Extracting image features from state-of-the-art neural networks for Computer Vision made easy
207 versions - Latest release: 10 days ago - 1 dependent repositories - 2.88 thousand downloads last month - 141 stars on GitHub - 1 maintainer
mvirs 1.1.1
mVIRs: Localisation of inducible prophages using NGS data
1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 12 stars on GitHub - 2 maintainers
caretta 0.1.2
Fast multiple protein structure alignment
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 24 stars on GitHub - 2 maintainers
rich-msa 0.1.0
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
1 version - Latest release: almost 2 years ago - 1 dependent repositories - 33 downloads last month - 75 stars on GitHub - 2 maintainers
samsift 0.2.5
SAMsift - sift your alignments
6 versions - Latest release: about 6 years ago - 1 dependent repositories - 55 downloads last month - 21 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants
20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.
21 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 2 maintainers
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...
3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
astred 0.9.7
A collection of syntactic metrics to calculate (dis)similarities between source and target senten...
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 117 downloads last month - 17 stars on GitHub - 1 maintainer
docoskin 0.1.0
"Onion-skin" visual differences between a reference document image and a scanned copy
1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 2 maintainers
align1d 2.3.0
A small package for 1d aligment in cuda
5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 2 maintainers
msa-cigars 0.0.1
To return CIGAR strings of a multiple sequences alignment
1 version - Latest release: over 5 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
viro-seq-utils 1.3.4
Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory.
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 2 maintainers
arbow 0.6.0
Cultivate your MSA to get better trees
15 versions - Latest release: about 4 years ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data
8 versions - Latest release: over 4 years ago - 1 dependent repositories - 88 downloads last month - 12 stars on GitHub - 1 maintainer
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python
17 versions - Latest release: about 5 years ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 1 maintainer
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites
150 versions - Latest release: over 3 years ago - 1 dependent repositories - 865 downloads last month - 273 stars on GitHub - 2 maintainers
align-benchmark 0.1.1
Benchmark tests for dualtext alignment
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites
104 versions - Latest release: almost 3 years ago - 1 dependent repositories - 615 downloads last month - 276 stars on GitHub - 2 maintainers
seqpipe 0.0.7
Sequencing pipeline
5 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 2 maintainers
subsume 0.2.16 💰
Language-agnostic synchronization of subtitles with video via speech detection.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 5 downloads last month - 6,478 stars on GitHub - 2 maintainers
pyali 0.1.1
A package for merging alignments
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
seq-tools 1.0.10
Python tools for working with biological sequence data
5 versions - Latest release: over 6 years ago - 1 dependent repositories - 86 downloads last month - 1 stars on GitHub - 2 maintainers
audalign 1.2.4
Audio Alignment and Recognition in Python
27 versions - Latest release: 4 months ago - 1 dependent repositories - 215 downloads last month - 67 stars on GitHub - 1 maintainer
linmdtw 0.1.7
A linear memory, exact, parallelizable algorithm for dynamic time warping in arbitrary Euclidean ...
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 50 stars on GitHub - 2 maintainers
bapt 1.1.0
Band alignment plotting tool
2 versions - Latest release: 12 days ago - 1 dependent repositories - 33 downloads last month - 21 stars on GitHub - 1 maintainer
pygas 1.0.4
python Guide aligned Sequences
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
seqanpy 0.2
Fast pairwise sequence alignment using SeqAn
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 11 downloads last month - 13 stars on GitHub - 2 maintainers
bialign 0.3
Bialignment of RNAs and proteins
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 2 maintainers
malign 0.3.2
Library for multiple asymmetric alignments on different alphabets
6 versions - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
genomeworks 0.0.0
NVIDIA genomics python libraries and utilities
1 version - Latest release: almost 4 years ago - 1 dependent repositories - 9 downloads last month - 276 stars on GitHub - 2 maintainers
pyclaragenomics-cuda-10-1 0.4.3
NVIDIA genomics python libraries and utiliites
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 273 stars on GitHub - 2 maintainers
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
enpc-aligner 1.0.5
Library of alignment of translated texts in differents languages
6 versions - Latest release: about 6 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 2 maintainers
geomapi 0.3.3
A standard library to manage geomatic data
34 versions - Latest release: 7 months ago - 1 dependent repositories - 328 downloads last month - 1 maintainer
pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 31 stars on GitHub - 2 maintainers
stxmalign 0.0.10
Pixel Alignment of STXM images.
4 versions - Latest release: over 6 years ago - 1 dependent repositories - 36 downloads last month - 61 stars on GitHub - 2 maintainers
pyalign 0.4.4
Fast and Versatile Alignments for Python
16 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 951 downloads last month - 43 stars on GitHub - 2 maintainers
pandas-mpmkp 1.0.9 💰
Powerful data structures for data analysis, time series, and statistics
2 versions - Latest release: about 4 years ago - 1 dependent repositories - 33 downloads last month - 41,864 stars on GitHub - 1 maintainer
scheduled-tasks-reader 0.1.1 💰
A program to various information of scheduled tasks.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 41,864 stars on GitHub - 2 maintainers
text-alignment-tool 0.2.15
A tool for performing complex text alignment processes.
18 versions - Latest release: over 2 years ago - 1 dependent repositories - 156 downloads last month - 1 stars on GitLab.com - 1 maintainer
genomeworks-cuda-9-2 0.5.3
NVIDIA genomics python libraries and utiliites
155 versions - Latest release: over 3 years ago - 1 dependent repositories - 669 downloads last month - 276 stars on GitHub - 2 maintainers
pyaliner 0.1.2
A library for comparing sequential data
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
recan 0.1.5
recan: recombination analysis tool
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 9 stars on GitHub - 2 maintainers
dmpfold 2.0
Protein structure prediction with the DMPfold2 method
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers
spruceup 2022.2.4
A module for lexible identification, visualization, and removal of outliers from large multiple s...
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 76 downloads last month - 17 stars on GitHub - 2 maintainers
subaligner 0.3.6
Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-...
29 versions - Latest release: 5 months ago - 1 dependent repositories - 664 downloads last month - 418 stars on GitHub - 2 maintainers
stxmproc 0.0.1
Pixel Alignment and Normalization of STXM images.
1 version - Latest release: over 6 years ago - 1 dependent repositories - 21 downloads last month - 61 stars on GitHub - 2 maintainers
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
16 versions - Latest release: 10 months ago - 1 dependent repositories - 1.81 thousand downloads last month - 16 stars on GitHub - 1 maintainer
sam-alignment-reconstructor 0.0.5
SAM Alignment Reconstructor
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 4 maintainers
ffsubs 0.3.3 💰
Language-agnostic synchronization of subtitles with video via speech detection, and other subtitl...
1 version - Latest release: about 4 years ago - 1 dependent repositories - 11 downloads last month - 6,513 stars on GitHub - 2 maintainers
blockrs 0.6.1
Encode and decode alignment blocks
7 versions - Latest release: over 5 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 2 maintainers
timething 0.0.27
Aligning text transcripts with their audio recordings.
29 versions - Latest release: over 1 year ago - 1 dependent repositories - 178 downloads last month - 64 stars on GitHub - 2 maintainers
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy
1 version - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 19 stars on GitHub - 2 maintainers
softalignments 1.0.4
Neural macine translation soft alignment visualisations for web and command line
1 version - Latest release: almost 4 years ago - 1 dependent repositories - 17 downloads last month - 72 stars on GitHub - 2 maintainers
pyprot 0.1-alpha
Python Proteins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 2 maintainers