Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "alignment" keyword
sato 0.1.7
Python package that generates consensus sequence from the forward and reverse sequences, performs...9 versions - Latest release: 13 days ago - 66 downloads last month - 0 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
27 versions - Latest release: 7 months ago - 11 dependent packages - 21 dependent repositories - 2.11 thousand downloads last month - 133 stars on GitHub - 1 maintainer
astroalign 2.5.1
Astrometric Alignment of Images27 versions - Latest release: 7 months ago - 11 dependent packages - 21 dependent repositories - 2.11 thousand downloads last month - 133 stars on GitHub - 1 maintainer
search-kwic 0.2
Tool for KWIC representation of paralleltext. Find a word in the parallel text corresponding to q...1 version - Latest release: almost 6 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
8 versions - Latest release: 6 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
monkey-patch.py 0.0.12
NOTE: This project has been moved [HERE](https://pypi.org/project/tanuki.py/)8 versions - Latest release: 6 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 2 maintainers
pyswrd 0.4.2
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic m...3 versions - Latest release: 4 months ago - 368 downloads last month - 3 stars on GitHub - 2 maintainers
nwalign 0.3.1
Needleman-Wunsch global sequence alignment7 versions - Latest release: over 14 years ago - 8 dependent repositories - 97 downloads last month - 2 maintainers
protparcon 3.1
ProtParCon - A framework for framework for processing molecular data and identifying parallel and...4 versions - Latest release: about 5 years ago - 1 dependent repositories - 30 downloads last month - 4 stars on GitHub - 2 maintainers
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
tanuki.py 0.2.0
The easiest way to build scalable LLM-powered applications, which gets cheaper and faster over time.6 versions - Latest release: 3 months ago - 1 dependent package - 77 downloads last month - 622 stars on GitHub - 2 maintainers
Top 9.4% on pypi.org
27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
protmapper 0.0.29
Map protein sites to human reference sequence.27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data8 versions - Latest release: over 4 years ago - 1 dependent repositories - 88 downloads last month - 12 stars on GitHub - 1 maintainer
pyprot 0.1-alpha
Python Proteins1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 2 maintainers
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.9 versions - Latest release: 2 months ago - 25 downloads last month - 9 stars on GitHub - 2 maintainers
pyaliner 0.1.2
A library for comparing sequential data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 2 maintainers
onto-merger 0.1.0
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes,(i.e. ontolog...1 version - Latest release: almost 2 years ago - 12 downloads last month - 89 stars on GitHub - 2 maintainers
Top 8.5% on pypi.org
14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
pyspoa 0.2.1
Python bindings to spoa14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
geomapi 0.3.3
A standard library to manage geomatic data34 versions - Latest release: 7 months ago - 1 dependent repositories - 328 downloads last month - 1 maintainer
distilabel 1.0.3
AI Feedback (AIF) framework16 versions - Latest release: 17 days ago - 776 downloads last month - 2 maintainers
disco-generation 1.1.1
A toolkit for distributional control of generative models4 versions - Latest release: 10 months ago - 20 downloads last month - 67 stars on GitHub - 3 maintainers
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
seq-tools 1.0.10
Python tools for working with biological sequence data5 versions - Latest release: over 6 years ago - 1 dependent repositories - 86 downloads last month - 1 stars on GitHub - 2 maintainers
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment4 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 147 downloads last month - 9 stars on GitHub - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
hadal 0.0.3
Tool for mining/alignment parallel texts3 versions - Latest release: 6 months ago - 19 downloads last month - 1 stars on GitHub - 2 maintainers
enpc-aligner 1.0.5
Library of alignment of translated texts in differents languages6 versions - Latest release: about 6 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 2 maintainers
sciencebeam-alignment 0.0.5
ScienceBeam Alignment5 versions - Latest release: about 4 years ago - 3 dependent repositories - 33 downloads last month - 0 stars on GitHub - 4 maintainers
pyali 0.1.1
A package for merging alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants20 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 108 downloads last month - 10 stars on GitHub - 2 maintainers
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.10 versions - Latest release: 8 months ago - 1 dependent package - 599 downloads last month - 5 stars on GitHub - 2 maintainers
textlinebreaker 0.2.0
A module to format strings. Length and alignment of lines can be specified. In the new version is...4 versions - Latest release: 22 days ago - 1 dependent package - 116 downloads last month - 0 stars on GitHub - 2 maintainers
malign 0.3.2
Library for multiple asymmetric alignments on different alphabets6 versions - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
elastic-tables 0.0.3
Format text using elastic tabstops3 versions - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
subsume 0.2.16 💰
Language-agnostic synchronization of subtitles with video via speech detection.1 version - Latest release: over 4 years ago - 1 dependent repositories - 5 downloads last month - 6,478 stars on GitHub - 2 maintainers
dnalignment 0.0.6
dna sequence alignment5 versions - Latest release: over 1 year ago - 21 downloads last month - 1 maintainer
srbpy 0.2.3
A Python/C++ Mixed Road Bridge Design Package17 versions - Latest release: 4 months ago - 1 dependent repositories - 48 downloads last month - 3 stars on GitHub - 1 maintainer
align-benchmark 0.1.1
Benchmark tests for dualtext alignment2 versions - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
phonechars 0.1
Extract phonological phylogenetic characters from aligned data1 version - Latest release: over 1 year ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites98 versions - Latest release: almost 3 years ago - 1 dependent repositories - 479 downloads last month - 276 stars on GitHub - 2 maintainers
alignqc 2.0.5
Python and R based tool for assessing the quality of alignments2 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 45 stars on GitHub - 1 maintainer
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 51 downloads last month - 2 maintainers
nmalign 0.0.3
forced alignment of lists of string by fuzzy string matching3 versions - Latest release: over 1 year ago - 1 dependent repositories - 14 downloads last month - 6 stars on GitHub - 1 maintainer
textjustify 0.0.5
A text justify package5 versions - Latest release: over 3 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 2 maintainers
align1d 2.3.0
A small package for 1d aligment in cuda5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 2 maintainers
recan 0.1.5
recan: recombination analysis tool5 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 9 stars on GitHub - 2 maintainers
palamedes 0.0.5
Palamedes: HGVS variants from a sequence alignment3 versions - Latest release: 24 days ago - 114 downloads last month - 2 stars on GitHub - 2 maintainers
pygas 1.0.4
python Guide aligned Sequences2 versions - Latest release: over 2 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 2 maintainers
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python17 versions - Latest release: about 5 years ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 1 maintainer
viro-seq-utils 1.3.4
Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory.3 versions - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 2 maintainers
Top 2.6% on pypi.org
9 versions - Latest release: over 1 year ago - 8 dependent packages - 25 dependent repositories - 16.3 thousand downloads last month - 457 stars on GitHub - 1 maintainer
rmsd 1.5.1
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB...9 versions - Latest release: over 1 year ago - 8 dependent packages - 25 dependent repositories - 16.3 thousand downloads last month - 457 stars on GitHub - 1 maintainer
py-goicp 0.0.4
GO-ICP compiled using Cython to use in python4 versions - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 113 stars on GitHub - 2 maintainers
minimappers2 0.1.3
A Python wrapper for minimap2-rs4 versions - Latest release: over 1 year ago - 8 downloads last month - 47 stars on GitHub - 1 maintainer
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy1 version - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 19 stars on GitHub - 2 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
deepslice 1.1.7
A package to align histology to 3D brain atlases16 versions - Latest release: 3 months ago - 674 downloads last month - 67 stars on GitHub - 1 maintainer
dmpfold 2.0
Protein structure prediction with the DMPfold2 method2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
15 versions - Latest release: 3 months ago - 5 dependent packages - 14 dependent repositories - 31.8 thousand downloads last month - 272 stars on GitHub - 2 maintainers
scikit-fda 0.9.1
Functional Data Analysis Python package.15 versions - Latest release: 3 months ago - 5 dependent packages - 14 dependent repositories - 31.8 thousand downloads last month - 272 stars on GitHub - 2 maintainers
scikit-fda-sim 0.7.1
Functional Data Analysis Python package.1 version - Latest release: over 1 year ago - 19 downloads last month - 272 stars on GitHub - 2 maintainers
biastools 0.0.2
The toolkits to analyze reference bias of short DNA read alignment.2 versions - Latest release: 8 months ago - 7 downloads last month - 9 stars on GitHub - 1 maintainer
pywfa 0.5.1
Align sequences using WFA2-lib9 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 261 downloads last month - 22 stars on GitHub - 1 maintainer
dsbplot 0.1.3
A package for visualizing alignment variations in DNA-seq data from double-strand break (DSB) exp...3 versions - Latest release: 4 months ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
timething 0.0.27
Aligning text transcripts with their audio recordings.29 versions - Latest release: over 1 year ago - 1 dependent repositories - 178 downloads last month - 64 stars on GitHub - 2 maintainers
pyfoal 1.0.1
Python forced aligner6 versions - Latest release: 29 days ago - 1 dependent repositories - 203 downloads last month - 50 stars on GitHub - 1 maintainer
pypar 0.0.6
Python phoneme alignment representation6 versions - Latest release: 29 days ago - 1 dependent package - 3 dependent repositories - 1.35 thousand downloads last month - 11 stars on GitHub - 2 maintainers
genomeworks-cuda-9-0 0.5.3
NVIDIA genomics python libraries and utiliites150 versions - Latest release: over 3 years ago - 1 dependent repositories - 865 downloads last month - 273 stars on GitHub - 2 maintainers
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.21 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 2 maintainers
msa-cigars 0.0.1
To return CIGAR strings of a multiple sequences alignment1 version - Latest release: over 5 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
baplotter 1.0.0b1 removed
Plotting of band gap alignments for a list of materials. The user can specify the material names,...3 versions - Latest release: over 1 year ago - 1 maintainer
Related Keywords
python
46
bioinformatics
41
genomics
19
sequence
17
data-analysis
15
data-science
15
pandas
15
mapping
14
flexible
14
poa
11
nvidia
10
gpu
10
cuda
10
partial-order-alignment
10
python-api
10
protein
8
registration
8
multiple-sequence-alignment
7
deep-learning
7
visualization
7
speech
6
sequence-alignment
6
audio
6
dna
5
pytorch
5
machine-learning
5
text
5
nlp
5
synchronization
5
phylogenetics
5
python3
5
subtitles
5
align
5
graph
5
forced-alignment
4
NGS
4
captions
4
string
4
comparison
4
srt
4
ffmpeg
4
llm
4
voice-activity-detection
4
sync
4
biology
4
needleman-wunsch
4
levenshtein
4
edit-distance
4
sequencing
3
parsing
3
minimap2
3
metagenomics
3
msa
3
similarity
3
data
3
vlc-media-player
3
deep learning
3
vlc
3
speech-detection
3
face
3
fft
3
ai
3
srt-subtitles
3
word
3
string-alignment
3
python-library
3
subtitle
3
fast-fourier-transform
3
neuroscience
3
vad
3
caption
3
video
3
clustering
3
dtw
3
algorithm
2
multiple
2
gpt-4-api
2
smith-waterman
2
genetics
2
attributes
2
quality-control
2
proteomics
2
gpt-4
2
tts
2
cli
2
block
2
trajectory-analysis
2
segmentation
2
phylogeny
2
phonology
2
tdd
2
machine-translation
2
tanuki
2
rust
2
ai-functions
2
hgvs
2
computer-vision
2
match
2
error
2
ngs
2