Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "metagenomics" keyword
metagenome-atlas 2.0.0
ATLAS - workflows for assembly, annotation, and genomic binning of metagenomic and metatranscript...2 versions - Latest release: over 5 years ago - 1 dependent repositories - 31 downloads last month - 346 stars on GitHub - 2 maintainers
ancientmetagenomedircheck 1.2.1
Performs validity check of ancientMetagenomeDir datasets6 versions - Latest release: over 3 years ago - 40 downloads last month - 2 stars on GitHub - 1 maintainer
clark-biom 1.0.0
Create BIOM-format tables from CLARK abundance tables.1 version - Latest release: about 6 years ago - 1 dependent repositories - 34 downloads last month - 1 stars on GitHub - 1 maintainer
panphlan 1.3
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and *i...2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 20 downloads last month - 39 stars on GitHub - 1 maintainer
qadabra 0.3.0
Differential abundance workflow for microbiome data2 versions - Latest release: 4 months ago - 27 downloads last month - 14 stars on GitHub - 1 maintainer
micomplete 1.1.1
Quality control of assembled genomes9 versions - Latest release: almost 5 years ago - 1 dependent package - 1 dependent repositories - 52 downloads last month - 2 maintainers
impy 0.2.8
Integrated Metaomic Pipeline command-line utility.13 versions - Latest release: about 7 years ago - 1 dependent repositories - 67 downloads last month - 1 maintainer
Related Keywords
bioinformatics
65
genomics
18
python
11
microbiome
9
microbiology
7
binning
7
taxonomic-classification
6
ngs
6
Metagenomics
6
deep-learning
6
taxonomy
6
pipeline
5
snakemake
5
assembly
5
workflow
4
biology
4
bacteria
4
Bioinformatics
4
machine-learning
4
pangenome
4
classification
4
conda
3
sequencing
3
contigs
3
assembly-graphs
3
comparative-genomics
3
clustering
3
alignment
3
metagenome-assembled genomes
3
metagenome-assembly
3
NGS
3
tool
3
profiling
3
taxonomic-classifications
3
metagenomic-classification
3
annotation
3
metagenomic-pipeline
3
ancient-dna
3
functional-annotation
3
k-mers
3
computational-biology
3
phylogenetics
2
horizontal-gene-transfer
2
hgt
2
strains
2
virus
2
visualization
2
deep
2
rna-seq
2
genomic-binning
2
viral-metagenomics
2
ancient-metagenomics
2
metatranscriptomics
2
data
2
Refinement
2
Binning
2
palaeogenomics
2
phage
2
hacktoberfest
2
genome
2
biom-format
2
simulation
2
biosynthetic-gene-clusters
2
16s
2
BIOM
2
mmseqs
2
assembly-binning
2
microbial-genomics
2
taxonomic
2
kraken
2
metagenome-assembled-genomes
2
ngless
2
self-supervised-learning
2
viruses
2
lgt
2
lateral-gene-transfer
2
clark
2
open-data
1
data-format
1
cross-platform
1
microbial-taxonomy
1
taxonomic tree
1
living tree
1
tree data processing
1
abundance-calculations
1
feature-engineering
1
ncbi-taxonomy-database
1
python-embedded-language
1
next-generation-sequencing
1
experimental
1
embedded-language
1
domain-specific-language
1
scrna-seq
1
pathogens
1
covid-19
1
xgboost
1
xgb
1
svm
1
sequence-analysis
1
phenotype-prediction
1