Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "MultipleSequenceAlignment" keyword
Top 1.7% on bioconductor.org
4 versions - Latest release: 21 days ago - 28 dependent packages - 1.15 million downloads total - 1 maintainer
ggtree 3.12.0
an R package for visualization of tree and annotation data4 versions - Latest release: 21 days ago - 28 dependent packages - 1.15 million downloads total - 1 maintainer
odseq 1.30.0
Outlier detection in multiple sequence alignments3 versions - Latest release: 6 months ago - 10.8 thousand downloads total - 1 maintainer
surfaltr 1.8.0
Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr3 versions - Latest release: 6 months ago - 2.28 thousand downloads total - 1 maintainer
R4RNA 1.30.0
An R package for RNA visualization and analysis3 versions - Latest release: 6 months ago - 2 dependent packages - 30 thousand downloads total - 1 maintainer
LymphoSeq 1.30.0
Analyze high-throughput sequencing of T and B cell receptors3 versions - Latest release: 6 months ago - 12.2 thousand downloads total - 1 maintainer
ggmsa 1.8.0
Plot Multiple Sequence Alignment using 'ggplot2'3 versions - Latest release: 6 months ago - 22.3 thousand downloads total - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: 6 months ago - 12.2 thousand downloads total - 2 maintainers
rprimer 1.6.0
Design Degenerate Oligos from a Multiple DNA Sequence Alignment3 versions - Latest release: 6 months ago - 2.67 thousand downloads total - 3 stars on GitHub - 1 maintainer
rfaRm 1.14.2
An R interface to the Rfam database5 versions - Latest release: 3 months ago - 4.46 thousand downloads total - 2 maintainers
tanggle 1.8.0
Visualization of Phylogenetic Networks3 versions - Latest release: 6 months ago - 2.67 thousand downloads total - 10 stars on GitHub - 1 maintainer
sitePath 1.18.0
Phylogeny-based sequence clustering with site polymorphism3 versions - Latest release: 6 months ago - 5.09 thousand downloads total - 8 stars on GitHub - 1 maintainer
bcSeq 1.24.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens3 versions - Latest release: 6 months ago - 8.26 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 1.8% on bioconductor.org
4 versions - Latest release: 18 days ago - 14 dependent packages - 312 thousand downloads total - 2 maintainers
Rsubread 2.18.0
Mapping, quantification and variant analysis of sequencing data4 versions - Latest release: 18 days ago - 14 dependent packages - 312 thousand downloads total - 2 maintainers
Top 2.8% on bioconductor.org
3 versions - Latest release: 15 days ago - 4 dependent packages - 175 thousand downloads total - 14 stars on GitHub - 1 maintainer
msa 1.36.0
Multiple Sequence Alignment3 versions - Latest release: 15 days ago - 4 dependent packages - 175 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
3 versions - Latest release: 15 days ago - 44.2 thousand downloads total - 1 maintainer
muscle 3.46.0
Multiple Sequence Alignment with MUSCLE3 versions - Latest release: 15 days ago - 44.2 thousand downloads total - 1 maintainer
GenomAutomorphism 1.6.0
Compute the automorphisms between DNA's Abelian group representations3 versions - Latest release: 19 days ago - 1.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.1% on bioconductor.org
2 versions - Latest release: 6 months ago - 7 dependent packages - 904 thousand downloads total - 1 maintainer
treeio 1.26.0
Base Classes and Functions for Phylogenetic Tree Input and Output2 versions - Latest release: 6 months ago - 7 dependent packages - 904 thousand downloads total - 1 maintainer
Related Keywords
Software
17
Alignment
15
DataImport
7
Visualization
6
Sequencing
6
SequenceMatching
5
Phylogenetics
4
Annotation
3
Clustering
3
DataRepresentation
3
MultipleComparison
3
SNP
2
FunctionalGenomics
2
WholeGenome
2
ImmunoOncology
2
Genetics
2
Preprocessing
2
GenomeAnnotation
1
IndelDetection
1
QualityControl
1
RNASeq
1
GeneticVariability
1
GeneRegulation
1
SingleCell
1
VariantAnnotation
1
VariantDetection
1
ComparativeGenomics
1
MathematicalBiology
1
genetic-code
1
genetic-code-algebra
1
genome
1
genome-algebra
1
GeneFusionDetection
1
GeneExpression
1
ChIPSeq
1
CRISPR
1
ATACSeq
1
phylogenetics
1
mutation
1
ThirdPartyClient
1
qPCR
1
ddPCR
1
Coverage
1
SomaticMutation
1
Technology
1
TargetedResequencing
1
SplicedAlignment
1
ReproducibleResearch
1