bioconductor.org "MultipleSequenceAlignment" keyword
Top 1.8% on bioconductor.org
8 versions - Latest release: 6 months ago - 14 dependent packages - 424 thousand downloads total - 2 maintainers
Rsubread 2.24.0
Mapping, quantification and variant analysis of sequencing data8 versions - Latest release: 6 months ago - 14 dependent packages - 424 thousand downloads total - 2 maintainers
Top 1.7% on bioconductor.org
13 versions - Latest release: 27 days ago - 28 dependent packages - 2.39 million downloads total - 1 maintainer
ggtree 4.0.5
an R package for visualization of tree and annotation data13 versions - Latest release: 27 days ago - 28 dependent packages - 2.39 million downloads total - 1 maintainer
bcSeq 1.32.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens6 versions - Latest release: 5 months ago - 15.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
7 versions - Latest release: 5 months ago - 4 dependent packages - 286 thousand downloads total - 21 stars on GitHub - 1 maintainer
msa 1.42.0
Multiple Sequence Alignment7 versions - Latest release: 5 months ago - 4 dependent packages - 286 thousand downloads total - 21 stars on GitHub - 1 maintainer
sitePath 1.26.0
Phylogeny-based sequence clustering with site polymorphism7 versions - Latest release: 5 months ago - 12.9 thousand downloads total - 11 stars on GitHub - 1 maintainer
LymphoSeq 1.38.0
Analyze high-throughput sequencing of T and B cell receptors6 versions - Latest release: 5 months ago - 20.4 thousand downloads total - 1 maintainer
R4RNA 1.38.0
An R package for RNA visualization and analysis6 versions - Latest release: 5 months ago - 2 dependent packages - 59.1 thousand downloads total - 1 maintainer
tanggle 1.16.0
Visualization of Phylogenetic Networks6 versions - Latest release: 5 months ago - 9.68 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
6 versions - Latest release: 5 months ago - 62.4 thousand downloads total - 1 maintainer
muscle 3.52.0
Multiple Sequence Alignment with MUSCLE6 versions - Latest release: 5 months ago - 62.4 thousand downloads total - 1 maintainer
ggmsa 1.16.0
Plot Multiple Sequence Alignment using 'ggplot2'7 versions - Latest release: 5 months ago - 48.2 thousand downloads total - 1 maintainer
GenomAutomorphism 1.12.0
Compute the automorphisms between DNA's Abelian group representations7 versions - Latest release: 5 months ago - 7.66 thousand downloads total - 0 stars on GitHub - 1 maintainer
rfaRm 1.22.0
An R interface to the Rfam database8 versions - Latest release: 5 months ago - 10.8 thousand downloads total - 2 maintainers
ggseqalign 1.4.0
Minimal Visualization of Sequence Alignments3 versions - Latest release: 5 months ago - 3.73 thousand downloads total - 0 stars on GitHub - 1 maintainer
surfaltr 1.16.0
Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr6 versions - Latest release: 5 months ago - 8.89 thousand downloads total - 1 maintainer
rhinotypeR 1.4.0
Rhinovirus genotyping3 versions - Latest release: 5 months ago - 3.46 thousand downloads total - 4 stars on GitHub - 1 maintainer
rprimer 1.14.0
Design Degenerate Oligos from a Multiple DNA Sequence Alignment6 versions - Latest release: 5 months ago - 8.98 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.1% on bioconductor.org
6 versions - Latest release: 5 months ago - 7 dependent packages - 1.98 million downloads total - 1 maintainer
treeio 1.34.0
Base Classes and Functions for Phylogenetic Tree Input and Output6 versions - Latest release: 5 months ago - 7 dependent packages - 1.98 million downloads total - 1 maintainer
odseq 1.38.0
Outlier detection in multiple sequence alignments6 versions - Latest release: 5 months ago - 17.6 thousand downloads total - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: over 2 years ago - 12.2 thousand downloads total - 2 maintainers
Related Keywords
Software
19
Alignment
16
Visualization
8
Sequencing
7
DataImport
7
Phylogenetics
5
SequenceMatching
5
MultipleComparison
4
Clustering
3
Genetics
3
Annotation
3
DataRepresentation
3
WholeGenome
2
ImmunoOncology
2
Preprocessing
2
SNP
2
FunctionalGenomics
2
genome-algebra
1
genome
1
genetic-code-algebra
1
genetic-code
1
MathematicalBiology
1
ChIPSeq
1
ThirdPartyClient
1
alignment
1
bioinformatics
1
ggplot2-enhancements
1
minimalistic
1
r
1
visualization
1
SplicedAlignment
1
Coverage
1
ddPCR
1
qPCR
1
SomaticMutation
1
GeneExpression
1
GeneFusionDetection
1
GeneRegulation
1
GeneticVariability
1
GenomeAnnotation
1
IndelDetection
1
QualityControl
1
RNASeq
1
SingleCell
1
VariantAnnotation
1
VariantDetection
1
ReproducibleResearch
1
ATACSeq
1
CRISPR
1
mutation
1
phylogenetics
1
TargetedResequencing
1
Technology
1
ComparativeGenomics
1