bioconductor.org "MultipleSequenceAlignment" keyword
Top 1.8% on bioconductor.org
9 versions - Latest release: 6 months ago - 14 dependent packages - 451 thousand downloads total - 2 maintainers
Rsubread 2.26.0
Mapping, quantification and variant analysis of sequencing data9 versions - Latest release: 6 months ago - 14 dependent packages - 451 thousand downloads total - 2 maintainers
Top 2.8% on bioconductor.org
9 versions - Latest release: about 2 months ago - 4 dependent packages - 305 thousand downloads total - 26 stars on GitHub - 1 maintainer
msa 1.44.1
Multiple Sequence Alignment9 versions - Latest release: about 2 months ago - 4 dependent packages - 305 thousand downloads total - 26 stars on GitHub - 1 maintainer
rprimer 1.16.0
Design Degenerate Oligos from a Multiple DNA Sequence Alignment7 versions - Latest release: 5 months ago - 14.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
14 versions - Latest release: 6 months ago - 28 dependent packages - 2.84 million downloads total - 1 maintainer
ggtree 4.2.0
an R package for visualization of tree and annotation data14 versions - Latest release: 6 months ago - 28 dependent packages - 2.84 million downloads total - 1 maintainer
ggseqalign 1.6.0
Minimal Visualization of Sequence Alignments4 versions - Latest release: 5 months ago - 8.36 thousand downloads total - 0 stars on GitHub - 1 maintainer
sitePath 1.28.0
Phylogeny-based sequence clustering with site polymorphism8 versions - Latest release: 4 months ago - 17.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
rhinotypeR 1.6.0
Rhinovirus genotyping4 versions - Latest release: 4 months ago - 7.24 thousand downloads total - 4 stars on GitHub - 1 maintainer
ggmsa 1.18.0
Plot Multiple Sequence Alignment using 'ggplot2'8 versions - Latest release: 5 months ago - 56.6 thousand downloads total - 1 maintainer
Top 3.1% on bioconductor.org
7 versions - Latest release: 5 months ago - 7 dependent packages - 2.35 million downloads total - 1 maintainer
treeio 1.36.1
Base Classes and Functions for Phylogenetic Tree Input and Output7 versions - Latest release: 5 months ago - 7 dependent packages - 2.35 million downloads total - 1 maintainer
Top 5.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 68.1 thousand downloads total - 1 maintainer
muscle 3.54.0
Multiple Sequence Alignment with MUSCLE7 versions - Latest release: 5 months ago - 68.1 thousand downloads total - 1 maintainer
bcSeq 1.34.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens7 versions - Latest release: 5 months ago - 19.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
odseq 1.40.0
Outlier detection in multiple sequence alignments7 versions - Latest release: 5 months ago - 26.2 thousand downloads total - 1 maintainer
LymphoSeq 1.40.0
Analyze high-throughput sequencing of T and B cell receptors7 versions - Latest release: 5 months ago - 30.6 thousand downloads total - 1 maintainer
rfaRm 1.24.1
An R interface to the Rfam database10 versions - Latest release: 4 months ago - 19.8 thousand downloads total - 2 maintainers
fRagmentomics 1.0.0
Extract Fragmentomics Features and Mutational Status1 version - Latest release: 6 months ago - 6.94 thousand downloads total - 13 stars on GitHub - 1 maintainer
R4RNA 1.40.0
An R package for RNA visualization and analysis7 versions - Latest release: 4 months ago - 2 dependent packages - 71.5 thousand downloads total - 1 maintainer
surfaltr 1.18.0
Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr7 versions - Latest release: 5 months ago - 17.7 thousand downloads total - 1 maintainer
tanggle 1.18.0
Visualization of Phylogenetic Networks7 versions - Latest release: 5 months ago - 17 thousand downloads total - 12 stars on GitHub - 1 maintainer
GenomAutomorphism 1.14.1
Compute the automorphisms between DNA's Abelian group representations9 versions - Latest release: 2 months ago - 12.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: almost 3 years ago - 12.2 thousand downloads total - 2 maintainers
Related Keywords
Software
20
Alignment
17
Visualization
8
Sequencing
8
DataImport
7
SequenceMatching
5
Phylogenetics
5
Genetics
4
MultipleComparison
4
Annotation
3
DataRepresentation
3
Clustering
3
Preprocessing
2
SNP
2
FunctionalGenomics
2
ImmunoOncology
2
VariantDetection
2
IndelDetection
2
WholeGenome
2
visualization
2
r
2
phylogenetic-networks
1
qPCR
1
ATACSeq
1
CRISPR
1
ReproducibleResearch
1
ChIPSeq
1
GeneExpression
1
GeneFusionDetection
1
GeneRegulation
1
GeneticVariability
1
GenomeAnnotation
1
QualityControl
1
RNASeq
1
SingleCell
1
phylogenetics
1
mutation
1
VariantAnnotation
1
SplicedAlignment
1
SomaticMutation
1
DNASeq
1
TargetedResequencing
1
Technology
1
ComparativeGenomics
1
MathematicalBiology
1
genetic-code
1
genetic-code-algebra
1
genome
1
genome-algebra
1
alignment
1
bioinformatics
1
ggplot2-enhancements
1
minimalistic
1
ThirdPartyClient
1
Coverage
1
ddPCR
1