bioconductor.org "MultipleSequenceAlignment" keyword
View the packages on the bioconductor.org package registry that are tagged with the "MultipleSequenceAlignment" keyword.
Top 1.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
Rsubread 2.22.1
Mapping, quantification and variant analysis of sequencing data7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
Top 1.7% on bioconductor.org
8 versions - Latest release: 10 days ago - 28 dependent packages - 1.69 million downloads total - 1 maintainer
ggtree 3.16.3
an R package for visualization of tree and annotation data8 versions - Latest release: 10 days ago - 28 dependent packages - 1.69 million downloads total - 1 maintainer
Top 2.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 4 dependent packages - 225 thousand downloads total - 19 stars on GitHub - 1 maintainer
msa 1.40.0
Multiple Sequence Alignment6 versions - Latest release: 3 months ago - 4 dependent packages - 225 thousand downloads total - 19 stars on GitHub - 1 maintainer
GenomAutomorphism 1.10.0
Compute the automorphisms between DNA's Abelian group representations6 versions - Latest release: 3 months ago - 5.23 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 7 dependent packages - 1.4 million downloads total - 1 maintainer
treeio 1.32.0
Base Classes and Functions for Phylogenetic Tree Input and Output5 versions - Latest release: 3 months ago - 7 dependent packages - 1.4 million downloads total - 1 maintainer
tanggle 1.14.0
Visualization of Phylogenetic Networks5 versions - Latest release: 3 months ago - 6.53 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 53.3 thousand downloads total - 1 maintainer
muscle 3.50.0
Multiple Sequence Alignment with MUSCLE5 versions - Latest release: 3 months ago - 53.3 thousand downloads total - 1 maintainer
rfaRm 1.20.0
An R interface to the Rfam database7 versions - Latest release: 3 months ago - 8 thousand downloads total - 2 maintainers
surfaltr 1.14.0
Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr5 versions - Latest release: 3 months ago - 5.91 thousand downloads total - 1 maintainer
LymphoSeq 1.36.0
Analyze high-throughput sequencing of T and B cell receptors5 versions - Latest release: 3 months ago - 16.5 thousand downloads total - 1 maintainer
rprimer 1.12.0
Design Degenerate Oligos from a Multiple DNA Sequence Alignment5 versions - Latest release: 3 months ago - 6.38 thousand downloads total - 3 stars on GitHub - 1 maintainer
sitePath 1.24.0
Phylogeny-based sequence clustering with site polymorphism5 versions - Latest release: 3 months ago - 8.99 thousand downloads total - 9 stars on GitHub - 1 maintainer
R4RNA 1.36.0
An R package for RNA visualization and analysis5 versions - Latest release: 3 months ago - 2 dependent packages - 44.8 thousand downloads total - 1 maintainer
ggseqalign 1.2.0
Minimal Visualization of Sequence Alignments2 versions - Latest release: 3 months ago - 1.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
ggmsa 1.14.0
Plot Multiple Sequence Alignment using 'ggplot2'5 versions - Latest release: 3 months ago - 34.3 thousand downloads total - 1 maintainer
odseq 1.36.0
Outlier detection in multiple sequence alignments5 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 1 maintainer
bcSeq 1.30.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens5 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: over 1 year ago - 12.2 thousand downloads total - 2 maintainers
Related Keywords
Software
18
Alignment
16
DataImport
7
Visualization
7
Sequencing
6
SequenceMatching
5
Phylogenetics
4
Clustering
3
Annotation
3
MultipleComparison
3
DataRepresentation
3
Preprocessing
2
FunctionalGenomics
2
SNP
2
ImmunoOncology
2
Genetics
2
WholeGenome
2
Coverage
1
Technology
1
ddPCR
1
TargetedResequencing
1
SplicedAlignment
1
ThirdPartyClient
1
qPCR
1
mutation
1
phylogenetics
1
alignment
1
bioinformatics
1
ggplot2-enhancements
1
minimalistic
1
r
1
visualization
1
ATACSeq
1
CRISPR
1
SomaticMutation
1
ChIPSeq
1
GeneExpression
1
GeneFusionDetection
1
GeneRegulation
1
GeneticVariability
1
GenomeAnnotation
1
IndelDetection
1
QualityControl
1
RNASeq
1
SingleCell
1
VariantAnnotation
1
VariantDetection
1
ReproducibleResearch
1
ComparativeGenomics
1
MathematicalBiology
1
genetic-code
1
genetic-code-algebra
1
genome
1
genome-algebra
1