bioconductor.org "VariantAnnotation" keyword
Top 1.8% on bioconductor.org
9 versions - Latest release: 4 months ago - 14 dependent packages - 439 thousand downloads total - 2 maintainers
Rsubread 2.26.0
Mapping, quantification and variant analysis of sequencing data9 versions - Latest release: 4 months ago - 14 dependent packages - 439 thousand downloads total - 2 maintainers
Top 1.5% on bioconductor.org
7 versions - Latest release: 4 months ago - 9 dependent packages - 362 thousand downloads total - 499 stars on GitHub - 1 maintainer
maftools 2.28.0 💰
Summarize, Analyze and Visualize MAF Files7 versions - Latest release: 4 months ago - 9 dependent packages - 362 thousand downloads total - 499 stars on GitHub - 1 maintainer
Top 0.9% on bioconductor.org
9 versions - Latest release: 4 months ago - 93 dependent packages - 2.16 million downloads total - 1 maintainer
VariantAnnotation 1.58.0
Annotation of Genetic Variants9 versions - Latest release: 4 months ago - 93 dependent packages - 2.16 million downloads total - 1 maintainer
lineagespot 1.16.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing7 versions - Latest release: 4 months ago - 9.84 thousand downloads total - 2 stars on GitHub - 1 maintainer
svaRetro 1.18.0
Retrotransposed transcript detection from structural variants8 versions - Latest release: 3 months ago - 11 thousand downloads total - 1 stars on GitHub - 1 maintainer
tadar 1.10.0
Transcriptome Analysis of Differential Allelic Representation7 versions - Latest release: 3 months ago - 8.16 thousand downloads total - 1 stars on GitHub - 1 maintainer
cageminer 1.18.0
Candidate Gene Miner8 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
parati 1.0.0
Parental Allele Transmission Inference for Trio Genotype Data1 version - Latest release: 4 months ago - 1.05 thousand downloads total - 2 stars on GitHub - 1 maintainer
SNPediaR 1.38.0
Query data from SNPedia7 versions - Latest release: 4 months ago - 17.8 thousand downloads total - 11 stars on GitHub - 1 maintainer
appreci8R 1.30.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...8 versions - Latest release: 3 months ago - 17.5 thousand downloads total - 1 maintainer
REBET 1.30.0
The subREgion-based BurdEn Test (REBET)7 versions - Latest release: 3 months ago - 13.5 thousand downloads total - 1 maintainer
podkat 1.44.0
Position-Dependent Kernel Association Test7 versions - Latest release: 3 months ago - 0 stars on GitHub - 1 maintainer
svaNUMT 1.18.0
NUMT detection from structural variant calls7 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
transmogR 1.8.1
Modify a set of reference sequences using a set of variants9 versions - Latest release: 14 days ago - 6.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
PCAN 1.40.0
Phenotype Consensus ANalysis (PCAN)7 versions - Latest release: 3 months ago - 21.3 thousand downloads total - 1 maintainer
HelloRanges 1.38.0
Introduce *Ranges to bedtools users7 versions - Latest release: 3 months ago - 2 dependent packages - 35.4 thousand downloads total - 1 maintainer
musicatk 2.6.0
Mutational Signature Comprehensive Analysis Toolkit10 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 12 stars on GitHub - 1 maintainer
MouseFM 1.22.0
In-silico methods for genetic finemapping in inbred mice9 versions - Latest release: 3 months ago - 14.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
RAREsim 1.16.0
Simulation of Rare Variant Genetic Data7 versions - Latest release: 2 months ago - 8.68 thousand downloads total - 4 stars on GitHub - 1 maintainer
GIGSEA 1.30.0
Genotype Imputed Gene Set Enrichment Analysis7 versions - Latest release: 3 months ago - 1 maintainer
cellbaseR 1.36.0
Querying annotation data from the high performance Cellbase web8 versions - Latest release: 3 months ago - 2 stars on GitHub - 1 maintainer
ipdDb 1.30.0
IPD IMGT/HLA and IPD KIR database for Homo sapiens7 versions - Latest release: about 2 months ago - 0 stars on GitHub - 1 maintainer
PureCN 2.18.0
Copy number calling and SNV classification using targeted short read sequencing11 versions - Latest release: 4 months ago - 146 stars on GitHub - 1 maintainer
AlphaMissenseR 1.8.0
Accessing AlphaMissense Data Resources in R9 versions - Latest release: 4 months ago - 8.38 thousand downloads total - 12 stars on GitHub - 1 maintainer
TVTB 1.38.0
TVTB: The VCF Tool Box9 versions - Latest release: 4 months ago - 19.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
rigvf 1.4.0
R interface to the IGVF Catalog6 versions - Latest release: 3 months ago - 4.34 thousand downloads total - 0 stars on GitHub - 1 maintainer
ProteoDisco 1.18.0
Generation of customized protein variant databases from genomic variants, splice-junctions and ma...7 versions - Latest release: 2 months ago - 11.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
VCFArray 1.28.0
Representing on-disk / remote VCF files as array-like objects7 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
seqCAT 1.34.0
High Throughput Sequencing Cell Authentication Toolkit7 versions - Latest release: 3 months ago - 18.9 thousand downloads total - 1 maintainer
geneAttribution 1.38.0
Identification of candidate genes associated with genetic variation7 versions - Latest release: 3 months ago - 19.7 thousand downloads total - 1 maintainer
katdetectr 1.14.0
Detection, Characterization and Visualization of Kataegis in Sequencing Data7 versions - Latest release: 3 months ago - 9.78 thousand downloads total - 1 maintainer
SigsPack 1.26.0
Mutational Signature Estimation for Single Samples7 versions - Latest release: 4 months ago - 13.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
OutSplice 1.12.0
Comparison of Splicing Events between Tumor and Normal Samples7 versions - Latest release: 3 months ago - 8.27 thousand downloads total - 1 stars on GitHub - 1 maintainer
StructuralVariantAnnotation 1.28.0
Variant annotations for structural variants7 versions - Latest release: 3 months ago - 3 dependent packages - 34.5 thousand downloads total - 1 maintainer
myvariant 1.42.0
Accesses MyVariant.info variant query and annotation services7 versions - Latest release: 3 months ago - 27.6 thousand downloads total - 1 maintainer
nanotatoR 1.22.0 removed
Next generation structural variant annotation and classification4 versions - Latest release: almost 2 years ago - 7.13 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 8.1% on bioconductor.org
3 versions - Latest release: about 2 years ago - 2 dependent packages - 36.7 thousand downloads total - 1 maintainer
ensemblVEP 1.46.0 removed
R Interface to Ensembl Variant Effect Predictor3 versions - Latest release: about 2 years ago - 2 dependent packages - 36.7 thousand downloads total - 1 maintainer
genotypeeval 1.31.1 removed
QA/QC of a gVCF or VCF file1 version - Latest release: almost 3 years ago - 10.4 thousand downloads total - 1 maintainer
Related Keywords
Software
38
Sequencing
22
SNP
17
Annotation
12
Genetics
12
DataImport
9
GenomicVariation
9
FunctionalGenomics
5
Coverage
5
VariantDetection
5
DataRepresentation
4
RNASeq
4
SequenceMatching
4
GeneExpression
4
Alignment
3
SomaticMutation
3
DifferentialExpression
3
DNASeq
3
WholeGenome
3
ImmunoOncology
3
GenePrediction
3
GeneRegulation
3
GeneticVariability
3
MultipleComparison
2
FunctionalPrediction
2
GeneTarget
2
GenomeWideAssociation
2
Network
2
BiomedicalInformatics
2
Visualization
2
GenomeAnnotation
2
Classification
2
bioinformatics
1
inbred-strains
1
mouse
1
qtl
1
qtl-mapping
1
GeneSetEnrichment
1
Regression
1
AnnotationHubSoftware
1
CopyNumberVariation
1
bioconductor-package
1
cell-free-dna
1
copy-number
1
loh
1
tumor-heterogeneity
1
tumor-mutational-burden
1
tumor-purity
1
StructuralPrediction
1
Transcriptomics
1
GUI
1
ThirdPartyClient
1
Proteomics
1
Infrastructure
1
AlternativeSplicing
1
DifferentialSplicing
1
GenomeAssembly
1
WorkflowStep
1
BatchEffect
1
cancer-genome-atlas
1
cancer-genomics
1
genomics
1
maf-files
1
r
1
tcga
1
Survival
1
FeatureExtraction
1
DriverMutation
1
SingleCell
1
QualityControl
1
Preprocessing
1
NetworkEnrichment
1
MultipleSequenceAlignment
1
TranscriptomeVariant
1
Pathways
1
BiologicalQuestion
1
IndelDetection
1
GeneFusionDetection
1
MathematicalBiology
1
ChIPSeq
1
PatternLogic
1
SystemsBiology
1
finemap
1
gene-candidates
1
inbred-mice
1