bioconductor.org "VariantAnnotation" keyword
Top 0.9% on bioconductor.org
8 versions - Latest release: 4 months ago - 93 dependent packages - 2.08 million downloads total - 1 maintainer
VariantAnnotation 1.56.0
Annotation of Genetic Variants8 versions - Latest release: 4 months ago - 93 dependent packages - 2.08 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
Rsubread 2.24.0
Mapping, quantification and variant analysis of sequencing data8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
lineagespot 1.14.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing6 versions - Latest release: 3 months ago - 7.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
6 versions - Latest release: 4 months ago - 9 dependent packages - 336 thousand downloads total - 485 stars on GitHub - 1 maintainer
maftools 2.26.0 💰
Summarize, Analyze and Visualize MAF Files6 versions - Latest release: 4 months ago - 9 dependent packages - 336 thousand downloads total - 485 stars on GitHub - 1 maintainer
PureCN 2.16.1
Copy number calling and SNV classification using targeted short read sequencing10 versions - Latest release: 3 days ago - 37.5 thousand downloads total - 144 stars on GitHub - 1 maintainer
podkat 1.42.0
Position-Dependent Kernel Association Test6 versions - Latest release: 3 months ago - 22.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
AlphaMissenseR 1.6.1
Accessing AlphaMissense Data Resources in R8 versions - Latest release: 3 months ago - 6.29 thousand downloads total - 9 stars on GitHub - 1 maintainer
SigsPack 1.24.0
Mutational Signature Estimation for Single Samples6 versions - Latest release: 3 months ago - 10.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
SNPediaR 1.36.0
Query data from SNPedia6 versions - Latest release: 3 months ago - 15.5 thousand downloads total - 11 stars on GitHub - 1 maintainer
tadar 1.8.0
Transcriptome Analysis of Differential Allelic Representation6 versions - Latest release: 3 months ago - 5.95 thousand downloads total - 1 stars on GitHub - 1 maintainer
cageminer 1.16.0
Candidate Gene Miner7 versions - Latest release: 3 months ago - 8.88 thousand downloads total - 1 stars on GitHub - 1 maintainer
ipdDb 1.28.0
IPD IMGT/HLA and IPD KIR database for Homo sapiens6 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
RAREsim 1.14.0
Simulation of Rare Variant Genetic Data6 versions - Latest release: 3 months ago - 6.85 thousand downloads total - 4 stars on GitHub - 1 maintainer
ProteoDisco 1.16.0
Generation of customized protein variant databases from genomic variants, splice-junctions and ma...6 versions - Latest release: 3 months ago - 8.45 thousand downloads total - 5 stars on GitHub - 1 maintainer
TVTB 1.36.0
TVTB: The VCF Tool Box8 versions - Latest release: 4 months ago - 16.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
svaRetro 1.15.1
Retrotransposed transcript detection from structural variants6 versions - Latest release: 4 months ago - 7.56 thousand downloads total - 1 stars on GitHub - 1 maintainer
GIGSEA 1.28.0
Genotype Imputed Gene Set Enrichment Analysis6 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
musicatk 2.4.0
Mutational Signature Comprehensive Analysis Toolkit9 versions - Latest release: 3 months ago - 11.2 thousand downloads total - 12 stars on GitHub - 1 maintainer
PCAN 1.38.0
Phenotype Consensus ANalysis (PCAN)6 versions - Latest release: 3 months ago - 17.8 thousand downloads total - 1 maintainer
MouseFM 1.20.0
In-silico methods for genetic finemapping in inbred mice7 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
REBET 1.28.0
The subREgion-based BurdEn Test (REBET)6 versions - Latest release: 3 months ago - 11.2 thousand downloads total - 1 maintainer
katdetectr 1.12.0
Detection, Characterization and Visualization of Kataegis in Sequencing Data6 versions - Latest release: 3 months ago - 7.19 thousand downloads total - 1 maintainer
HelloRanges 1.36.0
Introduce *Ranges to bedtools users6 versions - Latest release: 3 months ago - 2 dependent packages - 31.4 thousand downloads total - 1 maintainer
svaNUMT 1.16.0
NUMT detection from structural variant calls6 versions - Latest release: 3 months ago - 7.49 thousand downloads total - 3 stars on GitHub - 1 maintainer
seqCAT 1.32.0
High Throughput Sequencing Cell Authentication Toolkit6 versions - Latest release: 3 months ago - 15.4 thousand downloads total - 1 maintainer
transmogR 1.6.0
Modify a set of reference sequences using a set of variants7 versions - Latest release: 3 months ago - 4.79 thousand downloads total - 0 stars on GitHub - 1 maintainer
cellbaseR 1.34.0
Querying annotation data from the high performance Cellbase web7 versions - Latest release: 3 months ago - 18.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
VCFArray 1.26.0
Representing on-disk / remote VCF files as array-like objects6 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
geneAttribution 1.36.0
Identification of candidate genes associated with genetic variation6 versions - Latest release: 3 months ago - 16.7 thousand downloads total - 1 maintainer
OutSplice 1.10.0
Comparison of Splicing Events between Tumor and Normal Samples6 versions - Latest release: 3 months ago - 6.03 thousand downloads total - 1 stars on GitHub - 1 maintainer
appreci8R 1.28.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...7 versions - Latest release: 3 months ago - 14 thousand downloads total - 1 maintainer
StructuralVariantAnnotation 1.26.0
Variant annotations for structural variants6 versions - Latest release: 3 months ago - 3 dependent packages - 30.3 thousand downloads total - 1 maintainer
myvariant 1.40.0
Accesses MyVariant.info variant query and annotation services6 versions - Latest release: 3 months ago - 24.3 thousand downloads total - 1 maintainer
rigvf 1.2.3
R interface to the IGVF Catalog5 versions - Latest release: 27 days ago - 2.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
nanotatoR 1.22.0 removed
Next generation structural variant annotation and classification4 versions - Latest release: over 1 year ago - 7.13 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 8.1% on bioconductor.org
3 versions - Latest release: almost 2 years ago - 2 dependent packages - 36.7 thousand downloads total - 1 maintainer
ensemblVEP 1.46.0 removed
R Interface to Ensembl Variant Effect Predictor3 versions - Latest release: almost 2 years ago - 2 dependent packages - 36.7 thousand downloads total - 1 maintainer
genotypeeval 1.31.1 removed
QA/QC of a gVCF or VCF file1 version - Latest release: over 2 years ago - 10.4 thousand downloads total - 1 maintainer
Related Keywords
Software
37
Sequencing
21
SNP
16
Annotation
12
Genetics
11
DataImport
9
GenomicVariation
9
Coverage
5
FunctionalGenomics
5
VariantDetection
5
DataRepresentation
4
GeneExpression
4
SequenceMatching
4
RNASeq
4
Alignment
3
WholeGenome
3
GenePrediction
3
SomaticMutation
3
DNASeq
3
GeneRegulation
3
GeneticVariability
3
ImmunoOncology
3
DifferentialExpression
3
GeneTarget
2
MultipleComparison
2
BiomedicalInformatics
2
Visualization
2
GenomeAnnotation
2
Network
2
GenomeWideAssociation
2
FunctionalPrediction
2
Classification
2
ChIPSeq
1
Proteomics
1
AnnotationHubSoftware
1
GUI
1
GeneSetEnrichment
1
Regression
1
BiologicalQuestion
1
Pathways
1
BatchEffect
1
WorkflowStep
1
GenomeAssembly
1
ThirdPartyClient
1
DifferentialSplicing
1
AlternativeSplicing
1
Infrastructure
1
TranscriptomeVariant
1
qtl-mapping
1
qtl
1
mouse
1
inbred-strains
1
inbred-mice
1
gene-candidates
1
finemap
1
SystemsBiology
1
PatternLogic
1
MathematicalBiology
1
GeneFusionDetection
1
IndelDetection
1
MultipleSequenceAlignment
1
Preprocessing
1
QualityControl
1
SingleCell
1
DriverMutation
1
FeatureExtraction
1
Survival
1
bioinformatics
1
cancer-genome-atlas
1
cancer-genomics
1
genomics
1
maf-files
1
r
1
tcga
1
CopyNumberVariation
1
bioconductor-package
1
cell-free-dna
1
copy-number
1
loh
1
tumor-heterogeneity
1
tumor-mutational-burden
1
tumor-purity
1
StructuralPrediction
1
Transcriptomics
1
NetworkEnrichment
1