Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "VariantAnnotation" keyword
Top 1.5% on bioconductor.org
3 versions - Latest release: 20 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
maftools 2.20.0 💰
Summarize, Analyze and Visualize MAF Files3 versions - Latest release: 20 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
AlphaMissenseR 1.0.0
Accessing AlphaMissense Data Resources in R2 versions - Latest release: 21 days ago - 358 downloads total - 5 stars on GitHub - 1 maintainer
svaNUMT 1.8.0
NUMT detection from structural variant calls3 versions - Latest release: 6 months ago - 2.46 thousand downloads total - 3 stars on GitHub - 1 maintainer
katdetectr 1.4.0
Detection, Characterization and Visualization of Kataegis in Sequencing Data3 versions - Latest release: 6 months ago - 1.91 thousand downloads total - 1 maintainer
svaRetro 1.8.0
Retrotransposed transcript detection from structural variants3 versions - Latest release: 6 months ago - 2.44 thousand downloads total - 1 stars on GitHub - 1 maintainer
HelloRanges 1.28.0
Introduce *Ranges to bedtools users3 versions - Latest release: 6 months ago - 2 dependent packages - 15.8 thousand downloads total - 1 maintainer
appreci8R 1.20.2
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...4 versions - Latest release: 3 months ago - 7.54 thousand downloads total - 1 maintainer
geneAttribution 1.28.0
Identification of candidate genes associated with genetic variation3 versions - Latest release: 6 months ago - 10 thousand downloads total - 1 maintainer
GIGSEA 1.20.0
Genotype Imputed Gene Set Enrichment Analysis3 versions - Latest release: 6 months ago - 5.56 thousand downloads total - 1 maintainer
podkat 1.34.0
Position-Dependent Kernel Association Test3 versions - Latest release: 6 months ago - 13.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 8.1% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 35.3 thousand downloads total - 1 maintainer
ensemblVEP 1.44.0
R Interface to Ensembl Variant Effect Predictor3 versions - Latest release: 6 months ago - 2 dependent packages - 35.3 thousand downloads total - 1 maintainer
nanotatoR 1.18.0
Next generation structural variant annotation and classification3 versions - Latest release: 6 months ago - 6.31 thousand downloads total - 6 stars on GitHub - 1 maintainer
myvariant 1.32.0
Accesses MyVariant.info variant query and annotation services3 versions - Latest release: 6 months ago - 15.5 thousand downloads total - 1 maintainer
TVTB 1.28.0
TVTB: The VCF Tool Box3 versions - Latest release: 6 months ago - 9.85 thousand downloads total - 2 stars on GitHub - 1 maintainer
lineagespot 1.6.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing3 versions - Latest release: 6 months ago - 1.96 thousand downloads total - 2 stars on GitHub - 1 maintainer
SNPediaR 1.28.0
Query data from SNPedia3 versions - Latest release: 6 months ago - 9.71 thousand downloads total - 8 stars on GitHub - 1 maintainer
ProteoDisco 1.8.0
Generation of customized protein variant databases from genomic variants, splice-junctions and ma...3 versions - Latest release: 6 months ago - 2.49 thousand downloads total - 4 stars on GitHub - 1 maintainer
REBET 1.20.0
The subREgion-based BurdEn Test (REBET)3 versions - Latest release: 6 months ago - 5.44 thousand downloads total - 1 maintainer
VCFArray 1.18.0
Representing on-disk / remote VCF files as array-like objects3 versions - Latest release: 6 months ago - 5.81 thousand downloads total - 1 stars on GitHub - 1 maintainer
ipdDb 1.20.0
IPD IMGT/HLA and IPD KIR database for Homo sapiens3 versions - Latest release: 6 months ago - 6.95 thousand downloads total - 0 stars on GitHub - 1 maintainer
PCAN 1.30.0
Phenotype Consensus ANalysis (PCAN)3 versions - Latest release: 6 months ago - 10.7 thousand downloads total - 1 maintainer
StructuralVariantAnnotation 1.18.0
Variant annotations for structural variants3 versions - Latest release: 6 months ago - 3 dependent packages - 15.3 thousand downloads total - 1 maintainer
Top 1.8% on bioconductor.org
4 versions - Latest release: 16 days ago - 14 dependent packages - 312 thousand downloads total - 2 maintainers
Rsubread 2.18.0
Mapping, quantification and variant analysis of sequencing data4 versions - Latest release: 16 days ago - 14 dependent packages - 312 thousand downloads total - 2 maintainers
Top 0.9% on bioconductor.org
4 versions - Latest release: 19 days ago - 93 dependent packages - 1.54 million downloads total - 1 maintainer
VariantAnnotation 1.50.0
Annotation of Genetic Variants4 versions - Latest release: 19 days ago - 93 dependent packages - 1.54 million downloads total - 1 maintainer
PureCN 2.10.0
Copy number calling and SNV classification using targeted short read sequencing4 versions - Latest release: 12 days ago - 25.8 thousand downloads total - 120 stars on GitHub - 1 maintainer
OutSplice 1.4.0
Comparison of Splicing Events between Tumor and Normal Samples3 versions - Latest release: 13 days ago - 1.13 thousand downloads total - 1 stars on GitHub - 1 maintainer
cageminer 1.10.0
Candidate Gene Miner3 versions - Latest release: 14 days ago - 2.64 thousand downloads total - 1 stars on GitHub - 1 maintainer
RAREsim 1.8.0
Simulation of Rare Variant Genetic Data3 versions - Latest release: 16 days ago - 1.67 thousand downloads total - 4 stars on GitHub - 1 maintainer
cellbaseR 1.26.0
Querying annotation data from the high performance Cellbase web3 versions - Latest release: 6 months ago - 10.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
musicatk 1.12.0
Mutational Signature Comprehensive Analysis Toolkit2 versions - Latest release: 6 months ago - 4.45 thousand downloads total - 12 stars on GitHub - 1 maintainer
tadar 1.0.0
Transcriptome Analysis of Differential Allelic Representation1 version - Latest release: 7 months ago - 652 downloads total - 0 stars on GitHub - 1 maintainer
SigsPack 1.16.0
Mutational Signature Estimation for Single Samples2 versions - Latest release: 6 months ago - 4.69 thousand downloads total - 2 stars on GitHub - 1 maintainer
MouseFM 1.12.0
In-silico methods for genetic finemapping in inbred mice2 versions - Latest release: 6 months ago - 4.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
seqCAT 1.24.0
High Throughput Sequencing Cell Authentication Toolkit2 versions - Latest release: 6 months ago - 8.41 thousand downloads total - 1 maintainer
genotypeeval 1.31.1 removed
QA/QC of a gVCF or VCF file1 version - Latest release: 7 months ago - 10.4 thousand downloads total - 1 maintainer
Related Keywords
Software
35
Sequencing
20
SNP
16
Annotation
11
Genetics
11
DataImport
9
GenomicVariation
7
VariantDetection
5
Coverage
5
GeneExpression
4
SequenceMatching
4
RNASeq
4
FunctionalGenomics
4
DataRepresentation
4
ImmunoOncology
3
GenePrediction
3
WholeGenome
3
GeneticVariability
3
DifferentialExpression
3
SomaticMutation
3
DNASeq
3
GenomeWideAssociation
2
GeneRegulation
2
Alignment
2
MultipleComparison
2
GenomeAnnotation
2
FunctionalPrediction
2
Network
2
BiomedicalInformatics
2
Classification
2
Visualization
2
Transcriptomics
1
SingleCell
1
CopyNumberVariation
1
bioconductor-package
1
cell-free-dna
1
copy-number
1
loh
1
tumor-heterogeneity
1
tumor-mutational-burden
1
tumor-purity
1
AlternativeSplicing
1
DifferentialSplicing
1
NetworkEnrichment
1
BiologicalQuestion
1
GeneTarget
1
MathematicalBiology
1
PatternLogic
1
SystemsBiology
1
finemap
1
gene-candidates
1
inbred-mice
1
inbred-strains
1
mouse
1
qtl
1
qtl-mapping
1
BatchEffect
1
StructuralPrediction
1
tcga
1
r
1
maf-files
1
genomics
1
cancer-genomics
1
cancer-genome-atlas
1
GeneSetEnrichment
1
Regression
1
GenomeAssembly
1
WorkflowStep
1
bioinformatics
1
GUI
1
Proteomics
1
Survival
1
Infrastructure
1
AnnotationHubSoftware
1
FeatureExtraction
1
DriverMutation
1
Pathways
1
ChIPSeq
1
GeneFusionDetection
1
IndelDetection
1
MultipleSequenceAlignment
1
Preprocessing
1
QualityControl
1