Ecosyste.ms: Packages

Software 448 RNASeq 207 Sequencing 163 GeneExpression 154 DifferentialExpression 131 SingleCell 94 Visualization 93 Clustering 84 Preprocessing 78 DataImport 72 QualityControl 72 Transcriptomics 67 MassSpectrometry 65 Transcription 62 Proteomics 60 Normalization 58 Microarray 58 MultipleComparison 55 Regression 51 FlowCytometry 51 CellBasedAssays 44 Genetics 41 Epigenetics 41 GeneSetEnrichment 40 Bayesian 39 Coverage 39 Classification 38 StatisticalMethod 36 CellBiology 30 Metabolomics 29 DNAMethylation 28 BiomedicalInformatics 27 DataRepresentation 27 bioconductor 27 BatchEffect 26 r 26 GeneRegulation 26 AlternativeSplicing 25 TimeCourse 25 ChIPSeq 24 Infrastructure 24 Alignment 23 SystemsBiology 23 Network 21 GraphAndNetwork 21 DifferentialSplicing 21 GUI 20 FunctionalGenomics 20 FeatureExtraction 20 DimensionReduction 19 Metagenomics 19 Pathways 18 DifferentialMethylation 17 Microbiome 17 TwoChannel 16 OneChannel 15 SNP 15 Annotation 14 PrincipalComponent 14 WorkflowStep 13 GeneticVariability 13 GenomeAnnotation 12 ReportWriting 12 KEGG 11 ATACSeq 11 MethylSeq 11 DNASeq 10 WholeGenome 10 GO 10 mRNAMicroarray 9 HiddenMarkovModel 9 CopyNumberVariation 9 MethylationArray 9 bioinformatics 9 ExperimentalDesign 8 bioconductor-package 8 GeneTarget 8 single-cell 8 NetworkEnrichment 8 Survival 8 NetworkInference 7 ExomeSeq 7 Spatial 7 GenePrediction 7 BiologicalQuestion 6 SequenceMatching 6 mass-spectrometry 6 CRISPR 6 shiny 6 proteomics 6 Technology 6 gene-expression 6 ShinyApps 6 rna-seq 6 rstats 5 rnaseq 5 derfinder 5 Bioinformatics 5 TargetedResequencing 5 CpGIsland 4