Software 73 r 33 bioconductor 25 Sequencing 23 GeneExpression 21 DataImport 17 Visualization 17 SingleCell 12 Network 12 genomics 12 ImmunoOncology 11 RNASeq 11 Genetics 10 Infrastructure 10 Classification 9 Preprocessing 9 GeneSetEnrichment 9 Clustering 8 rstats 8 Pathways 8 Transcriptomics 8 r-package 7 GraphAndNetwork 7 bioconductor-package 6 single-cell 6 Coverage 6 Microarray 6 StatisticalMethod 6 DataRepresentation 6 FeatureExtraction 5 Bayesian 5 Annotation 5 DifferentialExpression 5 Normalization 5 DimensionReduction 5 WholeGenome 4 ThirdPartyClient 4 BiomedicalInformatics 4 BatchEffect 4 Microbiome 4 MultipleComparison 4 Alignment 4 GO 4 SystemsBiology 4 data-science 4 Proteomics 4 QualityControl 4 NetworkEnrichment 4 FunctionalGenomics 4 gds-format 3 OneChannel 3 Epigenetics 3 SequenceMatching 3 SomaticMutation 3 rna-seq 3 snp 3 genomics-visualization 3 computational-biology 3 DNASeq 3 ChIPSeq 3 proteomics 3 networks 3 MethylationArray 3 ComparativeGenomics 3 Metabolomics 3 Transcription 3 microbiome 3 DNAMethylation 3 scrna-seq 3 dna-methylation 3 Reactome 3 visualization 3 KEGG 3 pathways 3 data-visualization 2 MethylSeq 2 CopyNumberVariation 2 metagenomics 2 metabarcoding 2 amplicon 2 Metagenomics 2 DifferentialPeakCalling 2 HistoneModification 2 clustering 2 MathematicalBiology 2 comparative-genomics 2 mass-spectrometry 2 simulation 2 ExperimentalDesign 2 MassSpectrometry 2 pathway-analysis 2 microarray 2 Phylogenetics 2 cmap 2 gene-expression 2 tcga 2 tensor-decomposition 2 mRNAMicroarray 2 GeneRegulation 2 shiny 2