Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "SomaticMutation" keyword
Top 1.5% on bioconductor.org
3 versions - Latest release: 21 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
maftools 2.20.0 💰
Summarize, Analyze and Visualize MAF Files3 versions - Latest release: 21 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
HiLDA 1.16.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...3 versions - Latest release: 6 months ago - 1 dependent package - 5.69 thousand downloads total - 3 stars on GitHub - 1 maintainer
ZygosityPredictor 1.2.0
Package for prediction of zygosity for variants/genes in NGS data3 versions - Latest release: 6 months ago - 1.25 thousand downloads total - 1 maintainer
MADSEQ 1.28.0
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data3 versions - Latest release: 6 months ago - 9.99 thousand downloads total - 4 stars on GitHub - 1 maintainer
supersigs 1.10.0
Supervised mutational signatures3 versions - Latest release: 6 months ago - 2.71 thousand downloads total - 3 stars on GitHub - 1 maintainer
decompTumor2Sig 2.18.0
Decomposition of individual tumors into mutational signatures by signature refitting3 versions - Latest release: 6 months ago - 1 dependent package - 8.89 thousand downloads total - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: 6 months ago - 12.2 thousand downloads total - 2 maintainers
TRONCO 2.34.0
TRONCO, an R package for TRanslational ONCOlogy3 versions - Latest release: 6 months ago - 16.6 thousand downloads total - 1 maintainer
Top 6.7% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 41 thousand downloads total - 1 maintainer
MutationalPatterns 3.12.0
Comprehensive genome-wide analysis of mutational processes3 versions - Latest release: 6 months ago - 2 dependent packages - 41 thousand downloads total - 1 maintainer
QuartPAC 1.34.0
Identification of mutational clusters in protein quaternary structures3 versions - Latest release: 6 months ago - 12.5 thousand downloads total - 1 maintainer
DominoEffect 1.22.0
Identification and Annotation of Protein Hotspot Residues3 versions - Latest release: 6 months ago - 7.57 thousand downloads total - 2 maintainers
YAPSA 1.28.0
Yet Another Package for Signature Analysis3 versions - Latest release: 6 months ago - 16.5 thousand downloads total - 1 maintainer
selectKSigs 1.14.0
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation3 versions - Latest release: 6 months ago - 4.23 thousand downloads total - 0 stars on GitHub - 1 maintainer
semisup 1.26.0
Semi-Supervised Mixture Model3 versions - Latest release: 6 months ago - 7.99 thousand downloads total - 1 stars on GitHub - 1 maintainer
OncoSimulR 4.4.0
Forward Genetic Simulation of Cancer Progression with Epistasis3 versions - Latest release: 6 months ago - 15.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
signeR 2.6.0
Empirical Bayesian approach to mutational signature discovery3 versions - Latest release: 8 days ago - 14.2 thousand downloads total - 13 stars on GitHub - 1 maintainer
SparseSignatures 2.14.0
SparseSignatures3 versions - Latest release: 16 days ago - 7.65 thousand downloads total - 10 stars on GitHub - 1 maintainer
RESOLVE 1.6.0
RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes3 versions - Latest release: 17 days ago - 1.58 thousand downloads total - 0 stars on GitHub - 1 maintainer
VERSO 1.14.0
Viral Evolution ReconStructiOn (VERSO)3 versions - Latest release: 16 days ago - 3.43 thousand downloads total - 6 stars on GitHub - 1 maintainer
LACE 2.8.0
Longitudinal Analysis of Cancer Evolution (LACE)4 versions - Latest release: 17 days ago - 4.91 thousand downloads total - 13 stars on GitHub - 1 maintainer
musicatk 1.12.0
Mutational Signature Comprehensive Analysis Toolkit2 versions - Latest release: 6 months ago - 4.45 thousand downloads total - 12 stars on GitHub - 1 maintainer
SigsPack 1.16.0
Mutational Signature Estimation for Single Samples2 versions - Latest release: 6 months ago - 4.69 thousand downloads total - 2 stars on GitHub - 1 maintainer
plasmut 1.0.0
Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic,...1 version - Latest release: 7 months ago - 518 downloads total - 1 maintainer
SUITOR 1.4.0
Selecting the number of mutational signatures through cross-validation2 versions - Latest release: 6 months ago - 1.25 thousand downloads total - 0 stars on GitHub - 1 maintainer
RandomWalkRestartMH 1.22.0
Random walk with restart on multiplex and heterogeneous Networks2 versions - Latest release: 6 months ago - 1 dependent package - 9.31 thousand downloads total - 17 stars on GitHub - 1 maintainer
SomaticSignatures 2.38.0
Somatic Signatures2 versions - Latest release: 6 months ago - 1 dependent package - 42.8 thousand downloads total - 21 stars on GitHub - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: 7 months ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
PrecisionTrialDrawer 1.16.0 removed
A Tool to Analyze and Design NGS Based Custom Gene Panels1 version - Latest release: 7 months ago - 3.87 thousand downloads total - 1 maintainer
Related Keywords
Software
28
Sequencing
12
BiomedicalInformatics
10
GenomicVariation
7
Clustering
6
StatisticalMethod
6
DNASeq
5
Genetics
5
BiologicalQuestion
4
Visualization
4
Bayesian
4
DataImport
3
SNP
3
WholeGenome
3
FeatureExtraction
3
VariantAnnotation
3
bioinformatics
3
Classification
3
FunctionalGenomics
2
Pathways
2
MathematicalBiology
2
SystemsBiology
2
Alignment
2
GenePrediction
2
Proteomics
2
SequenceMatching
2
SingleCell
2
GraphAndNetwork
2
Network
2
NetworkInference
2
BioCarta
1
KEGG
1
bioconductor
1
GermlineMutation
1
genomics
1
Reactome
1
complex-systems
1
computational-biology
1
multiplex-networks
1
networks
1
systems-biology
1
GeneticVariability
1
PatternLogic
1
cancer
1
clonal
1
cooccurrence
1
exclusivity
1
mutual
1
GeneExpression
1
maf-files
1
r
1
tcga
1
cancer-genomics
1
cancer-genome-atlas
1
mutational-signatures
1
r-package
1
rjags
1
somatic-mutations
1
FunctionalPrediction
1
CopyNumberVariation
1
Coverage
1
VariantDetection
1
Regression
1
Survival
1
DriverMutation
1
DataRepresentation
1
MultipleSequenceAlignment
1
ImmunoOncology
1
Microarray
1
MultipleComparison
1