bioconductor.org "SomaticMutation" keyword
SomaticSignatures 2.48.0
Somatic Signatures7 versions - Latest release: 6 months ago - 1 dependent package - 74.2 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
7 versions - Latest release: 6 months ago - 9 dependent packages - 383 thousand downloads total - 505 stars on GitHub - 1 maintainer
maftools 2.28.0 💰
Summarize, Analyze and Visualize MAF Files7 versions - Latest release: 6 months ago - 9 dependent packages - 383 thousand downloads total - 505 stars on GitHub - 1 maintainer
MutSeqR 1.0.0
Analysis of Error-Corrected Sequencing Data for Mutation Detection1 version - Latest release: 6 months ago - 8.86 thousand downloads total - 11 stars on GitHub - 1 maintainer
LACHESIS 1.0.0
Functions used to analyze early tumor evolution from whole genome sequencing data1 version - Latest release: 6 months ago - 9.17 thousand downloads total - 3 stars on GitHub - 1 maintainer
TRONCO 2.44.0
TRONCO, an R package for TRanslational ONCOlogy8 versions - Latest release: 6 months ago - 43.3 thousand downloads total - 1 maintainer
plasmut 1.10.0
Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic,...6 versions - Latest release: 6 months ago - 12.9 thousand downloads total - 1 maintainer
ZygosityPredictor 1.12.0
Package for prediction of zygosity for variants/genes in NGS data7 versions - Latest release: 6 months ago - 15.7 thousand downloads total - 1 maintainer
ClonalSim 1.0.0
Simulation of Tumor Clonal Evolution with Realistic Sequencing Noise1 version - Latest release: 6 months ago - 3.41 thousand downloads total - 1 stars on GitHub - 1 maintainer
musicatk 2.6.0
Mutational Signature Comprehensive Analysis Toolkit10 versions - Latest release: 6 months ago - 25.3 thousand downloads total - 12 stars on GitHub - 1 maintainer
DominoEffect 1.32.0
Identification and Annotation of Protein Hotspot Residues7 versions - Latest release: 5 months ago - 26 thousand downloads total - 2 maintainers
SUITOR 1.14.0
Selecting the number of mutational signatures through cross-validation7 versions - Latest release: 6 months ago - 14.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
signeR 2.14.0
Empirical Bayesian approach to mutational signature discovery7 versions - Latest release: 6 months ago - 36.9 thousand downloads total - 14 stars on GitHub - 1 maintainer
OncoSimulR 4.14.0
Forward Genetic Simulation of Cancer Progression with Epistasis8 versions - Latest release: 5 months ago - 36.8 thousand downloads total - 8 stars on GitHub - 1 maintainer
decompTumor2Sig 2.28.1
Decomposition of individual tumors into mutational signatures by signature refitting8 versions - Latest release: 3 months ago - 1 dependent package - 23.8 thousand downloads total - 1 maintainer
RandomWalkRestartMH 1.26.0 removed
Random walk with restart on multiplex and heterogeneous Networks4 versions - Latest release: almost 2 years ago - 1 dependent package - 10.7 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 6.7% on bioconductor.org
8 versions - Latest release: 6 months ago - 2 dependent packages - 78.2 thousand downloads total - 1 maintainer
MutationalPatterns 3.22.0
Comprehensive genome-wide analysis of mutational processes8 versions - Latest release: 6 months ago - 2 dependent packages - 78.2 thousand downloads total - 1 maintainer
SigsPack 1.26.0
Mutational Signature Estimation for Single Samples7 versions - Latest release: 6 months ago - 17.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
LACE 2.16.0
Longitudinal Analysis of Cancer Evolution (LACE)8 versions - Latest release: 6 months ago - 18.6 thousand downloads total - 16 stars on GitHub - 1 maintainer
SparseSignatures 2.22.0
SparseSignatures7 versions - Latest release: 6 months ago - 22 thousand downloads total - 11 stars on GitHub - 1 maintainer
RESOLVE 1.14.0
RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes7 versions - Latest release: 5 months ago - 11.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
HiLDA 1.26.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...7 versions - Latest release: 6 months ago - 1 dependent package - 18.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
VERSO 1.22.0
Viral Evolution ReconStructiOn (VERSO)7 versions - Latest release: 6 months ago - 13.3 thousand downloads total - 7 stars on GitHub - 1 maintainer
supersigs 1.19.0
Supervised mutational signatures7 versions - Latest release: 5 months ago - 14.7 thousand downloads total - 3 stars on GitHub - 1 maintainer
selectKSigs 1.24.0
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation7 versions - Latest release: 5 months ago - 14.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
semisup 1.36.0
Semi-Supervised Mixture Model7 versions - Latest release: 6 months ago - 18.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
YAPSA 1.38.0
Yet Another Package for Signature Analysis8 versions - Latest release: 6 months ago - 44 thousand downloads total - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: about 3 years ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
MADSEQ 1.36.0 removed
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data6 versions - Latest release: 11 months ago - 15.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
QuartPAC 1.40.0 removed
Identification of mutational clusters in protein quaternary structures5 versions - Latest release: over 1 year ago - 15.5 thousand downloads total - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: almost 3 years ago - 12.2 thousand downloads total - 2 maintainers
PrecisionTrialDrawer 1.16.0 removed
A Tool to Analyze and Design NGS Based Custom Gene Panels1 version - Latest release: about 3 years ago - 3.87 thousand downloads total - 1 maintainer
Related Keywords
Software
31
Sequencing
15
BiomedicalInformatics
10
StatisticalMethod
8
GenomicVariation
8
Clustering
6
Visualization
6
Genetics
5
DNASeq
5
BiologicalQuestion
4
WholeGenome
4
DataImport
4
Bayesian
4
bioinformatics
3
SNP
3
VariantAnnotation
3
Classification
3
FeatureExtraction
3
GraphAndNetwork
2
Survival
2
VariantDetection
2
MathematicalBiology
2
Network
2
NetworkInference
2
Pathways
2
SystemsBiology
2
SingleCell
2
FunctionalGenomics
2
DriverMutation
2
r-package
2
GenePrediction
2
Alignment
2
SequenceMatching
2
Proteomics
2
Coverage
2
CopyNumberVariation
1
cancer
1
clonal
1
cooccurrence
1
exclusivity
1
mutual
1
Microarray
1
MultipleComparison
1
GermlineMutation
1
mutational-signatures
1
tcga
1
r
1
GeneTarget
1
bioconductor
1
maf-files
1
ImmunoOncology
1
DataRepresentation
1
cancer-genome-atlas
1
genomics
1
cancer-genomics
1
TimeCourse
1
tumor-evolution
1
whole-genome-sequencing
1
BioCarta
1
KEGG
1
Regression
1
GeneExpression
1
MultipleSequenceAlignment
1
Reactome
1
complex-systems
1
computational-biology
1
multiplex-networks
1
networks
1
systems-biology
1
FunctionalPrediction
1
somatic-mutations
1
rjags
1
GeneticVariability
1
PatternLogic
1