bioconductor.org "SomaticMutation" keyword
Top 1.5% on bioconductor.org
6 versions - Latest release: 4 months ago - 9 dependent packages - 337 thousand downloads total - 485 stars on GitHub - 1 maintainer
maftools 2.26.0 💰
Summarize, Analyze and Visualize MAF Files6 versions - Latest release: 4 months ago - 9 dependent packages - 337 thousand downloads total - 485 stars on GitHub - 1 maintainer
decompTumor2Sig 2.26.0
Decomposition of individual tumors into mutational signatures by signature refitting6 versions - Latest release: 4 months ago - 1 dependent package - 17.4 thousand downloads total - 1 maintainer
musicatk 2.4.0
Mutational Signature Comprehensive Analysis Toolkit9 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 12 stars on GitHub - 1 maintainer
signeR 2.12.0
Empirical Bayesian approach to mutational signature discovery6 versions - Latest release: 4 months ago - 22.5 thousand downloads total - 13 stars on GitHub - 1 maintainer
supersigs 1.18.0
Supervised mutational signatures6 versions - Latest release: 4 months ago - 10.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
TRONCO 2.42.0
TRONCO, an R package for TRanslational ONCOlogy7 versions - Latest release: 3 months ago - 26.1 thousand downloads total - 1 maintainer
HiLDA 1.24.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...6 versions - Latest release: 4 months ago - 1 dependent package - 12.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
SUITOR 1.12.0
Selecting the number of mutational signatures through cross-validation6 versions - Latest release: 4 months ago - 6.67 thousand downloads total - 0 stars on GitHub - 1 maintainer
ZygosityPredictor 1.10.0
Package for prediction of zygosity for variants/genes in NGS data6 versions - Latest release: 3 months ago - 6.3 thousand downloads total - 1 maintainer
SomaticSignatures 2.46.0
Somatic Signatures6 versions - Latest release: 4 months ago - 1 dependent package - 56.5 thousand downloads total - 22 stars on GitHub - 1 maintainer
DominoEffect 1.30.0
Identification and Annotation of Protein Hotspot Residues6 versions - Latest release: 4 months ago - 14.1 thousand downloads total - 2 maintainers
plasmut 1.8.0
Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic,...5 versions - Latest release: 3 months ago - 5.57 thousand downloads total - 1 maintainer
VERSO 1.20.0
Viral Evolution ReconStructiOn (VERSO)6 versions - Latest release: 3 months ago - 9.19 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 6.7% on bioconductor.org
7 versions - Latest release: 6 days ago - 2 dependent packages - 68.7 thousand downloads total - 1 maintainer
MutationalPatterns 3.20.1
Comprehensive genome-wide analysis of mutational processes7 versions - Latest release: 6 days ago - 2 dependent packages - 68.7 thousand downloads total - 1 maintainer
semisup 1.34.0
Semi-Supervised Mixture Model6 versions - Latest release: 3 months ago - 14.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
YAPSA 1.36.1
Yet Another Package for Signature Analysis7 versions - Latest release: 3 months ago - 28.7 thousand downloads total - 1 maintainer
SigsPack 1.24.0
Mutational Signature Estimation for Single Samples6 versions - Latest release: 4 months ago - 10.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
MADSEQ 1.36.0
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data6 versions - Latest release: 4 months ago - 15.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
OncoSimulR 4.12.0
Forward Genetic Simulation of Cancer Progression with Epistasis7 versions - Latest release: 3 months ago - 24 thousand downloads total - 7 stars on GitHub - 1 maintainer
LACE 2.14.0
Longitudinal Analysis of Cancer Evolution (LACE)7 versions - Latest release: 4 months ago - 12.5 thousand downloads total - 15 stars on GitHub - 1 maintainer
SparseSignatures 2.20.0
SparseSignatures6 versions - Latest release: 4 months ago - 14.9 thousand downloads total - 11 stars on GitHub - 1 maintainer
selectKSigs 1.22.0
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation6 versions - Latest release: 3 months ago - 9.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
RESOLVE 1.12.0
RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes6 versions - Latest release: 4 months ago - 6.58 thousand downloads total - 1 stars on GitHub - 1 maintainer
QuartPAC 1.40.0 removed
Identification of mutational clusters in protein quaternary structures5 versions - Latest release: 11 months ago - 15.5 thousand downloads total - 1 maintainer
RandomWalkRestartMH 1.26.0 removed
Random walk with restart on multiplex and heterogeneous Networks4 versions - Latest release: over 1 year ago - 1 dependent package - 10.7 thousand downloads total - 22 stars on GitHub - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: over 2 years ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: over 2 years ago - 12.2 thousand downloads total - 2 maintainers
PrecisionTrialDrawer 1.16.0 removed
A Tool to Analyze and Design NGS Based Custom Gene Panels1 version - Latest release: over 2 years ago - 3.87 thousand downloads total - 1 maintainer
Related Keywords
Software
28
Sequencing
12
BiomedicalInformatics
10
GenomicVariation
7
Clustering
6
StatisticalMethod
6
DNASeq
5
Genetics
5
Bayesian
4
Visualization
4
BiologicalQuestion
4
DataImport
3
WholeGenome
3
SNP
3
Classification
3
FeatureExtraction
3
bioinformatics
3
VariantAnnotation
3
GraphAndNetwork
2
SystemsBiology
2
Network
2
NetworkInference
2
Pathways
2
FunctionalGenomics
2
SingleCell
2
MathematicalBiology
2
GenePrediction
2
Alignment
2
Proteomics
2
SequenceMatching
2
complex-systems
1
DataRepresentation
1
VariantDetection
1
Reactome
1
BioCarta
1
KEGG
1
computational-biology
1
multiplex-networks
1
networks
1
systems-biology
1
GeneticVariability
1
PatternLogic
1
cancer
1
clonal
1
cooccurrence
1
exclusivity
1
mutual
1
MultipleSequenceAlignment
1
GeneExpression
1
DriverMutation
1
Survival
1
cancer-genome-atlas
1
cancer-genomics
1
genomics
1
maf-files
1
r
1
tcga
1
bioconductor
1
Regression
1
ImmunoOncology
1
mutational-signatures
1
r-package
1
rjags
1
somatic-mutations
1
FunctionalPrediction
1
GermlineMutation
1
Microarray
1
MultipleComparison
1
CopyNumberVariation
1
Coverage
1