Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

bioconductor.org "CRISPR" keyword

CrispRVariants 1.30.0
Tools for counting and visualising mutations in a target location
3 versions - Latest release: 6 months ago - 17.1 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
MAGeCKFlute 2.6.0
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
3 versions - Latest release: 6 months ago - 1 dependent package - 32.7 thousand downloads total - 1 maintainer
CRISPRseek 1.42.0
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
3 versions - Latest release: 6 months ago - 3 dependent packages - 28.9 thousand downloads total - 1 maintainer
crisprScore 1.6.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
3 versions - Latest release: 6 months ago - 3 dependent packages - 5 thousand downloads total - 9 stars on GitHub - 1 maintainer
LinTInd 1.6.0
Lineage tracing by indels
3 versions - Latest release: 6 months ago - 2.06 thousand downloads total - 1 maintainer
crisprBowtie 1.6.0
Bowtie-based alignment of CRISPR gRNA spacer sequences
3 versions - Latest release: 6 months ago - 2 dependent packages - 4.72 thousand downloads total - 1 stars on GitHub - 1 maintainer
gCrisprTools 2.8.0
Suite of Functions for Pooled Crispr Screen QC and Analysis
3 versions - Latest release: 6 months ago - 11.6 thousand downloads total - 1 maintainer
crisprBwa 1.6.0
BWA-based alignment of CRISPR gRNA spacer sequences
3 versions - Latest release: 6 months ago - 1 dependent package - 2.59 thousand downloads total - 1 stars on GitHub - 1 maintainer
GUIDEseq 1.32.0
GUIDE-seq and PEtag-seq analysis pipeline
3 versions - Latest release: 6 months ago - 1 dependent package - 14.3 thousand downloads total - 1 maintainer
bcSeq 1.24.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens
3 versions - Latest release: 6 months ago - 8.26 thousand downloads total - 0 stars on GitHub - 1 maintainer
gemini 1.16.0
GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens
3 versions - Latest release: 6 months ago - 4.81 thousand downloads total - 15 stars on GitHub - 1 maintainer
crisprDesign 1.4.0
Comprehensive design of CRISPR gRNAs for nucleases and base editors
3 versions - Latest release: 6 months ago - 3 dependent packages - 4 thousand downloads total - 15 stars on GitHub - 1 maintainer
screenCounter 1.4.0
Counting Reads in High-Throughput Sequencing Screens
3 versions - Latest release: 5 days ago - 1.22 thousand downloads total - 3 stars on GitHub - 1 maintainer
crisprViz 1.6.0
Visualization Functions for CRISPR gRNAs
3 versions - Latest release: 7 days ago - 2 dependent packages - 3.21 thousand downloads total - 4 stars on GitHub - 1 maintainer
gscreend 1.18.0
Analysis of pooled genetic screens
4 versions - Latest release: 8 days ago - 4.89 thousand downloads total - 11 stars on GitHub - 1 maintainer
crisprBase 1.6.0
Base functions and classes for CRISPR gRNA design
2 versions - Latest release: 7 months ago - 6 dependent packages - 4.34 thousand downloads total - 2 stars on GitHub - 1 maintainer
CellBarcode 1.10.0
Cellular DNA Barcode Analysis toolkit
4 versions - Latest release: 10 days ago - 2.51 thousand downloads total - 0 stars on GitHub - 1 maintainer
multicrispr 1.14.0
Multi-locus multi-purpose Crispr/Cas design
4 versions - Latest release: 10 days ago - 4.14 thousand downloads total - 0 stars on GitHub - 1 maintainer
crisprVerse 1.6.0
Easily install and load the crisprVerse ecosystem for CRISPR gRNA design
3 versions - Latest release: 20 days ago - 2.4 thousand downloads total - 7 stars on GitHub - 1 maintainer
CRISPRball 1.0.0
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filte...
1 version - Latest release: 21 days ago - 276 downloads total - 5 stars on GitHub - 1 maintainer
TAPseq 1.16.0
Targeted scRNA-seq primer design for TAP-seq
4 versions - Latest release: 16 days ago - 4.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
nempi 1.12.0
Inferring unobserved perturbations from gene expression data
3 versions - Latest release: 19 days ago - 2.89 thousand downloads total - 2 stars on GitHub - 1 maintainer
mnem 1.20.0
Mixture Nested Effects Models
3 versions - Latest release: 19 days ago - 4 dependent packages - 8.23 thousand downloads total - 4 stars on GitHub - 1 maintainer
crisprShiny 1.0.0
Exploring curated CRISPR gRNAs via Shiny
1 version - Latest release: 21 days ago - 164 downloads total - 1 stars on GitHub - 1 maintainer
amplican 1.24.0
Automated analysis of CRISPR experiments
2 versions - Latest release: 6 months ago - 11.8 thousand downloads total - 9 stars on GitHub - 1 maintainer
Related Keywords
Software 25 FunctionalGenomics 11 crispr 9 crispr-design 7 grna 7 grna-sequence 7 grna-sequences 7 crispr-target 6 ImmunoOncology 6 bioconductor-package 6 bioconductor 6 Alignment 6 PooledScreens 6 crispr-cas9 5 sgrna 5 sgrna-design 5 GeneTarget 5 Sequencing 5 QualityControl 4 SingleCell 4 Visualization 4 crispr-analysis 4 ATACSeq 3 RNASeq 3 SystemsBiology 3 Pathways 3 Preprocessing 2 NetworkInference 2 GUI 2 DifferentialExpression 2 Technology 2 Network 2 DNASeq 2 aligner 2 GeneSetEnrichment 2 Normalization 2 GeneRegulation 2 SequenceMatching 2 FunctionalPrediction 2 GeneExpression 2 rpackage 1 cellular-barcode 1 aplicom 1 ShinyApps 1 crispr-screen 1 data-visualization 1 StatisticalMethod 1 DataRepresentation 1 interactive-visualizations 1 mageck 1 plotly 1 r 1 screening 1 shiny 1 Classification 1 DifferentialMethylation 1 GeneSignaling 1 NeuralNetwork 1 qPCR 1 GeneticVariability 1 GenomicVariation 1 VariantDetection 1 KEGG 1 genomics 1 scoring-algorithm 1 bowtie 1 BiomedicalInformatics 1 CellBiology 1 ExperimentalDesign 1 Genetics 1 MultipleComparison 1 Pharmacogenetics 1 Pharmacogenomics 1 Regression 1 bwa 1 WorkflowStep 1 MultipleSequenceAlignment 1 Bayesian 1 DataImport 1 computational-biology 1 genetic-interactions 1 genomics-analysis 1 visualization 1