bioconductor.org "CRISPR" keyword
GUIDEseq 1.42.0
GUIDE-seq and PEtag-seq analysis pipeline7 versions - Latest release: 5 months ago - 1 dependent package - 41.2 thousand downloads total - 1 maintainer
crisprDesign 1.14.0
Comprehensive design of CRISPR gRNAs for nucleases and base editors7 versions - Latest release: 5 months ago - 3 dependent packages - 25.4 thousand downloads total - 33 stars on GitHub - 1 maintainer
crisprBowtie 1.16.0
Bowtie-based alignment of CRISPR gRNA spacer sequences7 versions - Latest release: 5 months ago - 2 dependent packages - 23.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
mnem 1.28.0
Mixture Nested Effects Models7 versions - Latest release: 4 months ago - 4 dependent packages - 22.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
DeepTarget 1.6.0
Deep characterization of cancer drugs4 versions - Latest release: 5 months ago - 9.16 thousand downloads total - 1 maintainer
amplican 1.34.0
Automated analysis of CRISPR experiments7 versions - Latest release: 5 months ago - 31.3 thousand downloads total - 12 stars on GitHub - 1 maintainer
CrispRVariants 1.40.0
Tools for counting and visualising mutations in a target location7 versions - Latest release: 5 months ago - 35.8 thousand downloads total - 1 maintainer
multicrispr 1.22.0
Multi-locus multi-purpose Crispr/Cas design9 versions - Latest release: 5 months ago - 18.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
TAPseq 1.24.0
Targeted scRNA-seq primer design for TAP-seq9 versions - Latest release: 4 months ago - 18.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
gemini 1.26.0
GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens7 versions - Latest release: 5 months ago - 15.4 thousand downloads total - 15 stars on GitHub - 1 maintainer
screenCounter 1.12.0
Counting Reads in High-Throughput Sequencing Screens7 versions - Latest release: 4 months ago - 11.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
gCrisprTools 2.18.0
Suite of Functions for Pooled Crispr Screen QC and Analysis7 versions - Latest release: 5 months ago - 27.4 thousand downloads total - 1 maintainer
crisprShiny 1.8.0
Exploring curated CRISPR gRNAs via Shiny5 versions - Latest release: 5 months ago - 9.07 thousand downloads total - 2 stars on GitHub - 1 maintainer
CellBarcode 1.18.0
Cellular DNA Barcode Analysis toolkit8 versions - Latest release: 5 months ago - 23.7 thousand downloads total - 2 stars on GitHub - 1 maintainer
gscreend 1.26.0
Analysis of pooled genetic screens8 versions - Latest release: 5 months ago - 16.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
crisprVerse 1.14.0
Easily install and load the crisprVerse ecosystem for CRISPR gRNA design7 versions - Latest release: 4 months ago - 13.6 thousand downloads total - 15 stars on GitHub - 1 maintainer
crisprBwa 1.16.0
BWA-based alignment of CRISPR gRNA spacer sequences7 versions - Latest release: 5 months ago - 1 dependent package - 12.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
crisprViz 1.14.0
Visualization Functions for CRISPR gRNAs7 versions - Latest release: 5 months ago - 2 dependent packages - 16.5 thousand downloads total - 8 stars on GitHub - 1 maintainer
CRISPRball 1.8.0
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filte...6 versions - Latest release: 5 months ago - 9.25 thousand downloads total - 13 stars on GitHub - 1 maintainer
bcSeq 1.34.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens7 versions - Latest release: 5 months ago - 19.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
nempi 1.20.0
Inferring unobserved perturbations from gene expression data7 versions - Latest release: 5 months ago - 13.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
CRISPRseek 1.52.0
Design of guide RNAs in CRISPR genome-editing systems7 versions - Latest release: 5 months ago - 3 dependent packages - 53.8 thousand downloads total - 1 maintainer
crisprScore 1.16.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs7 versions - Latest release: 5 months ago - 3 dependent packages - 25.4 thousand downloads total - 31 stars on GitHub - 1 maintainer
crisprBase 1.16.0
Base functions and classes for CRISPR gRNA design7 versions - Latest release: 5 months ago - 6 dependent packages - 23.7 thousand downloads total - 6 stars on GitHub - 1 maintainer
LinTInd 1.14.0 removed
Lineage tracing by indels6 versions - Latest release: 11 months ago - 8.12 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
5 versions - Latest release: over 1 year ago - 1 dependent package - 42.4 thousand downloads total - 1 maintainer
MAGeCKFlute 2.12.0 removed
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens5 versions - Latest release: over 1 year ago - 1 dependent package - 42.4 thousand downloads total - 1 maintainer
Related Keywords
Software
26
FunctionalGenomics
11
crispr
10
crispr-design
8
grna-sequences
7
ImmunoOncology
7
grna-sequence
7
grna
7
crispr-target
6
PooledScreens
6
bioconductor-package
6
bioconductor
6
GeneTarget
6
Alignment
6
sgrna-design
5
crispr-analysis
5
Sequencing
5
sgrna
5
crispr-cas9
5
SingleCell
4
Pathways
4
QualityControl
4
RNASeq
4
Visualization
4
ATACSeq
3
SystemsBiology
3
DifferentialExpression
3
GeneExpression
3
GeneSetEnrichment
3
shiny
2
NetworkInference
2
Normalization
2
Network
2
aligner
2
DNASeq
2
Technology
2
GeneRegulation
2
SequenceMatching
2
FunctionalPrediction
2
GUI
2
Preprocessing
2
Genetics
1
cellular-barcode
1
aplicom
1
bwa
1
ExperimentalDesign
1
MultipleComparison
1
CellBiology
1
Classification
1
DifferentialMethylation
1
GeneSignaling
1
NeuralNetwork
1
MultipleSequenceAlignment
1
DataRepresentation
1
BiomedicalInformatics
1
GeneticVariability
1
GenomicVariation
1
visualization
1
Regression
1
Pharmacogenetics
1
VariantDetection
1
Pharmacogenomics
1
qPCR
1
genomics-analysis
1
StatisticalMethod
1
ShinyApps
1
crispr-screen
1
data-visualization
1
interactive-visualizations
1
mageck
1
plotly
1
r
1
screening
1
genomics
1
scoring-algorithm
1
GenePrediction
1
ReportWriting
1
rpackage
1
WorkflowStep
1
Bayesian
1
DataImport
1
computational-biology
1
genetic-interactions
1
KEGG
1
bowtie
1