bioconductor.org "CRISPR" keyword
View the packages on the bioconductor.org package registry that are tagged with the "CRISPR" keyword.
crisprVerse 1.10.0
Easily install and load the crisprVerse ecosystem for CRISPR gRNA design5 versions - Latest release: 3 months ago - 7.08 thousand downloads total - 7 stars on GitHub - 1 maintainer
crisprScore 1.12.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs5 versions - Latest release: 3 months ago - 3 dependent packages - 10.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
mnem 1.24.0
Mixture Nested Effects Models5 versions - Latest release: 3 months ago - 4 dependent packages - 13.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
screenCounter 1.8.0
Counting Reads in High-Throughput Sequencing Screens5 versions - Latest release: 2 months ago - 4.57 thousand downloads total - 3 stars on GitHub - 1 maintainer
crisprBowtie 1.12.0
Bowtie-based alignment of CRISPR gRNA spacer sequences5 versions - Latest release: 2 months ago - 2 dependent packages - 9.97 thousand downloads total - 3 stars on GitHub - 1 maintainer
crisprDesign 1.10.0
Comprehensive design of CRISPR gRNAs for nucleases and base editors5 versions - Latest release: 3 months ago - 3 dependent packages - 9.71 thousand downloads total - 23 stars on GitHub - 1 maintainer
DeepTarget 1.2.0
Deep characterization of cancer drugs2 versions - Latest release: 3 months ago - 2.29 thousand downloads total - 1 maintainer
amplican 1.30.0
Automated analysis of CRISPR experiments5 versions - Latest release: 3 months ago - 18.5 thousand downloads total - 9 stars on GitHub - 1 maintainer
crisprBwa 1.12.0
BWA-based alignment of CRISPR gRNA spacer sequences5 versions - Latest release: 3 months ago - 1 dependent package - 6.33 thousand downloads total - 1 stars on GitHub - 1 maintainer
crisprViz 1.10.0
Visualization Functions for CRISPR gRNAs5 versions - Latest release: 3 months ago - 2 dependent packages - 7.44 thousand downloads total - 9 stars on GitHub - 1 maintainer
gemini 1.22.0
GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens5 versions - Latest release: 3 months ago - 8.09 thousand downloads total - 15 stars on GitHub - 1 maintainer
nempi 1.16.0
Inferring unobserved perturbations from gene expression data5 versions - Latest release: 3 months ago - 6.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
CrispRVariants 1.36.0
Tools for counting and visualising mutations in a target location5 versions - Latest release: 3 months ago - 21.9 thousand downloads total - 1 maintainer
CRISPRseek 1.48.0
Design of guide RNAs in CRISPR genome-editing systems5 versions - Latest release: 3 months ago - 3 dependent packages - 34.1 thousand downloads total - 1 maintainer
GUIDEseq 1.38.0
GUIDE-seq and PEtag-seq analysis pipeline5 versions - Latest release: 3 months ago - 1 dependent package - 18.8 thousand downloads total - 1 maintainer
CRISPRball 1.4.0
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filte...3 versions - Latest release: 3 months ago - 3.53 thousand downloads total - 9 stars on GitHub - 1 maintainer
crisprBase 1.12.0
Base functions and classes for CRISPR gRNA design5 versions - Latest release: 3 months ago - 6 dependent packages - 10 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 40.5 thousand downloads total - 1 maintainer
MAGeCKFlute 2.12.0
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens5 versions - Latest release: 3 months ago - 1 dependent package - 40.5 thousand downloads total - 1 maintainer
gCrisprTools 2.14.0
Suite of Functions for Pooled Crispr Screen QC and Analysis5 versions - Latest release: 3 months ago - 15.9 thousand downloads total - 1 maintainer
LinTInd 1.12.0
Lineage tracing by indels5 versions - Latest release: 3 months ago - 5.42 thousand downloads total - 1 maintainer
crisprShiny 1.4.0
Exploring curated CRISPR gRNAs via Shiny3 versions - Latest release: 3 months ago - 3.24 thousand downloads total - 2 stars on GitHub - 1 maintainer
multicrispr 1.18.0
Multi-locus multi-purpose Crispr/Cas design7 versions - Latest release: 3 months ago - 7.75 thousand downloads total - 0 stars on GitHub - 1 maintainer
TAPseq 1.20.0
Targeted scRNA-seq primer design for TAP-seq6 versions - Latest release: 3 months ago - 8.81 thousand downloads total - 4 stars on GitHub - 1 maintainer
gscreend 1.22.0
Analysis of pooled genetic screens6 versions - Latest release: 3 months ago - 8.63 thousand downloads total - 11 stars on GitHub - 1 maintainer
bcSeq 1.30.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens5 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
CellBarcode 1.14.0
Cellular DNA Barcode Analysis toolkit6 versions - Latest release: 3 months ago - 16.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
26
FunctionalGenomics
11
crispr
10
crispr-design
8
ImmunoOncology
7
grna
7
grna-sequence
7
grna-sequences
7
Alignment
6
PooledScreens
6
bioconductor-package
6
bioconductor
6
GeneTarget
6
crispr-target
6
crispr-cas9
5
Sequencing
5
sgrna
5
sgrna-design
5
crispr-analysis
5
QualityControl
4
SingleCell
4
RNASeq
4
Pathways
4
Visualization
4
GeneExpression
3
SystemsBiology
3
ATACSeq
3
DifferentialExpression
3
GeneSetEnrichment
3
SequenceMatching
2
GeneRegulation
2
Technology
2
Normalization
2
Preprocessing
2
shiny
2
GUI
2
aligner
2
NetworkInference
2
Network
2
DNASeq
2
FunctionalPrediction
2
interactive-visualizations
1
mageck
1
data-visualization
1
plotly
1
r
1
genomics
1
screening
1
rpackage
1
KEGG
1
BiomedicalInformatics
1
CellBiology
1
ExperimentalDesign
1
Genetics
1
MultipleComparison
1
Pharmacogenetics
1
Pharmacogenomics
1
Regression
1
StatisticalMethod
1
MultipleSequenceAlignment
1
aplicom
1
cellular-barcode
1
scoring-algorithm
1
bowtie
1
genomics-analysis
1
GenePrediction
1
ReportWriting
1
qPCR
1
bwa
1
visualization
1
Bayesian
1
DataImport
1
computational-biology
1
genetic-interactions
1
Classification
1
DifferentialMethylation
1
GeneSignaling
1
NeuralNetwork
1
DataRepresentation
1
GeneticVariability
1
GenomicVariation
1
VariantDetection
1
WorkflowStep
1
ShinyApps
1
crispr-screen
1