Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "ngs" keyword
pyconfdict 0.0.1.dev3
Python configuration dictionary1 version - Latest release: over 8 years ago - 1 dependent repositories - 11 downloads last month - 14 stars on GitHub - 1 maintainer
ngs-test-utils 0.0.5
Utilities for generation of synthetic NGS files5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 47 downloads last month - 0 stars on GitHub - 4 maintainers
ngsderive 4.0.0
Forensic analysis tool useful in backwards computing information from next-generation sequencing ...24 versions - Latest release: 8 months ago - 1 dependent repositories - 172 downloads last month - 11 stars on GitHub - 1 maintainer
murphy 0.1
Generic tools to identify overlapping genomic regions1 version - Latest release: almost 7 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
mitty 2.29.0
Simulator for genomic data4 versions - Latest release: over 5 years ago - 1 dependent repositories - 27 downloads last month - 13 stars on GitHub - 1 maintainer
grape.pipeline.runner 1.0
Console script for running Grape RNA-Seq pipelines1 version - Latest release: almost 12 years ago - 2 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
19 versions - Latest release: 25 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-framework 24.0.2
Galaxy web framework19 versions - Latest release: 25 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-driver 24.0.2
Galaxy test driver18 versions - Latest release: 25 days ago - 1 dependent package - 1 dependent repositories - 185 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.1% on pypi.org
20 versions - Latest release: 25 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-execution 24.0.2
Galaxy job execution runtime utilities20 versions - Latest release: 25 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
fqutils 0.0.0.dev6
fastq file utils in python5 versions - Latest release: over 6 years ago - 1 dependent repositories - 22 downloads last month - 1 maintainer
fings 1.7.1
Filters for Next Generation Sequencing4 versions - Latest release: about 3 years ago - 1 dependent repositories - 46 downloads last month - 8 stars on GitHub - 1 maintainer
fastq-and-furious 0.3.2
Fast handling of FASTQ files6 versions - Latest release: almost 3 years ago - 2 dependent repositories - 32 downloads last month - 50 stars on GitHub - 1 maintainer
demort 0.2.4
DEmultiplexing MOnitoring Report Tool3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
cosmos-wfm 2.13.11
Workflow Management System229 versions - Latest release: over 3 years ago - 4 dependent repositories - 481 downloads last month - 70 stars on GitHub - 1 maintainer
chronqc 1.0.4
A Quality Control Monitoring System for Clinical Next Generation Sequencing4 versions - Latest release: over 6 years ago - 1 dependent repositories - 39 downloads last month - 17 stars on GitHub - 1 maintainer
chfilter 1.3
Simple instructions to remove 16s rRNA reads from metagenomics samples2 versions - Latest release: over 6 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
strkit 0.14.0
A toolkit for analyzing variation in short(ish) tandem repeats.100 versions - Latest release: 4 months ago - 1 dependent repositories - 614 downloads last month - 2 stars on GitHub - 1 maintainer
vcfy 0.0.9
Generate VCF file with random variants from reference genome9 versions - Latest release: about 3 years ago - 1 dependent repositories - 109 downloads last month - 6 stars on GitHub - 1 maintainer
basevar 0.0.1.3
BaseVar: A python software for calling variants from ultra low pass WGS data.3 versions - Latest release: about 5 years ago - 1 dependent repositories - 27 downloads last month - 20 stars on GitHub - 1 maintainer
atropos 1.1.32
trim adapters from high-throughput sequencing reads62 versions - Latest release: 6 months ago - 3 dependent repositories - 327 downloads last month - 116 stars on GitHub - 1 maintainer
galaxy-test-api 24.0.2
Galaxy API tests18 versions - Latest release: 25 days ago - 1 dependent repositories - 186 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-selenium 24.0.2
Galaxy Selenium interaction framework19 versions - Latest release: 25 days ago - 1 dependent repositories - 222 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.6% on pypi.org
25 versions - Latest release: 25 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-objectstore 24.0.2
Galaxy objectstore framework and plugins25 versions - Latest release: 25 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
22 versions - Latest release: 25 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-metrics 24.0.2
Galaxy job metrics22 versions - Latest release: 25 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.2% on pypi.org
19 versions - Latest release: 25 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-auth 24.0.2
Galaxy auth framework and implementations19 versions - Latest release: 25 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
18 versions - Latest release: 25 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-base 24.0.2
Galaxy testing utilities18 versions - Latest release: 25 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.4% on pypi.org
19 versions - Latest release: 25 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-app 24.0.2
Galaxy application (backend)19 versions - Latest release: 25 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
damona 0.12.2
A manager of singularity containers and their singularity recipes (NGS applications)29 versions - Latest release: 2 months ago - 1 dependent repositories - 150 downloads last month - 5 stars on GitHub - 1 maintainer
recentrifuge 1.14.0
Robust comparative analysis and contamination removal for metagenomics82 versions - Latest release: 4 months ago - 1 dependent repositories - 477 downloads last month - 83 stars on GitHub - 1 maintainer
raisin.pyramid 1.2.1
A package used in the Raisin web application2 versions - Latest release: over 11 years ago - 2 dependent repositories - 8 downloads last month - 1 maintainer
Top 3.5% on pypi.org
25 versions - Latest release: over 2 years ago - 1 dependent package - 10 dependent repositories - 5.97 thousand downloads last month - 67 stars on GitHub - 4 maintainers
refgenie 0.12.1
Refgenie creates a standardized folder structure for reference genome files and indexes. You can ...25 versions - Latest release: over 2 years ago - 1 dependent package - 10 dependent repositories - 5.97 thousand downloads last month - 67 stars on GitHub - 4 maintainers
Top 2.2% on pypi.org
27 versions - Latest release: over 2 years ago - 2 dependent packages - 40 dependent repositories - 33 thousand downloads last month - 3 stars on GitHub - 4 maintainers
refgenconf 0.12.2
A standardized configuration object for reference genome assemblies27 versions - Latest release: over 2 years ago - 2 dependent packages - 40 dependent repositories - 33 thousand downloads last month - 3 stars on GitHub - 4 maintainers
raisin.restish 1.3
A package used in the Raisin web application2 versions - Latest release: almost 12 years ago - 2 dependent repositories - 9 downloads last month - 1 maintainer
ngstk 0.0.1rc2
Next-generation sequencing utility functions3 versions - Latest release: about 5 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 4 maintainers
grabseqs 0.7.0
Easily download reads from next-gen sequencing repositories like NCBI SRA11 versions - Latest release: over 4 years ago - 1 dependent repositories - 86 downloads last month - 101 stars on GitHub - 1 maintainer
raisin.resource 1.4.1
A package used in the Raisin web application3 versions - Latest release: over 11 years ago - 2 dependent repositories - 8 downloads last month - 1 maintainer
raisin.restkit 1.1.1
A package used in the Raisin web application1 version - Latest release: almost 12 years ago - 2 dependent repositories - 6 downloads last month - 1 maintainer
raisin.recipe.transformation 1.1.1
A Buildout recipe for transforming data for the Raisin data warehouse1 version - Latest release: almost 12 years ago - 2 dependent repositories - 1 downloads last month - 1 maintainer
Related Keywords
bioinformatics
114
sequencing
53
genomics
45
pipeline
44
workflow
41
hacktoberfest
30
dna
28
science
27
workflow-engine
27
usegalaxy
26
Galaxy
21
transcriptome
14
RNA-Seq
14
python
12
ETL
11
rna-seq
10
project
10
snakemake
8
NGS
7
metagenomics
6
fastq
6
metadata
6
sequana
5
galaxy
5
chip-seq
5
GUI
4
wgs
4
bed
4
illumina
3
pipeline-submission-engine
3
quality-control
3
bacteria
3
coverage
3
barcode
3
microbiology
3
sequence-analysis
3
hi-c
3
python3
3
read-simulation
3
sequence
3
pipelines
3
3d-genome
3
demultiplexing
2
RNAseq
2
RNADiff
2
differential analysis
2
hifi
2
reproducibility
2
reference-genome
2
hts
2
bioinformatics-pipeline
2
manager
2
conversion
2
gvcf
2
contact
2
Hi-C
2
microhaplotypes
2
forensics
2
nanopore
2
atac-seq
2
next-generation-sequencing
2
bam
2
conda
2
ChIP-seq
2
sra
2
cnv
2
database
2
dna-seq
2
high-throughput sequencing
2
long-reads
2
server
2
DNA
2
rna
2
sam
2
seqann
2
gfe
2
hla
2
hla-typing
2
ngs-format
2
mapper-evaluation
2
alignment
2
long-read-sequencing
2
edit
1
hamming
1
distance
1
high-throughput-sequencing
1
SAM
1
Bioinformatics
1
riboplot
1
bioinformatics-scripts
1
riboseq
1
ribosome-profiling
1
microbial genomics
1
ani
1
mash
1
reference-genomes
1
refseq
1
pytest
1
vcf-files
1
inference
1