Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "genetics" keyword
snipar 0.0.18
Library and command line scripts for inferring identity-by-descent (IBD) segments shared between ...14 versions - Latest release: 11 months ago - 1 dependent repositories - 781 downloads last month - 22 stars on GitHub - 2 maintainers
biogridpy 0.1.1
Python client for the BioGRID REST API webservice2 versions - Latest release: over 7 years ago - 1 dependent repositories - 9 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
32 versions - Latest release: about 1 month ago - 5 dependent packages - 5 dependent repositories - 3.16 thousand downloads last month - 299 stars on GitHub - 3 maintainers
cellrank 2.0.4
CellRank: dynamics from multi-view single-cell data32 versions - Latest release: about 1 month ago - 5 dependent packages - 5 dependent repositories - 3.16 thousand downloads last month - 299 stars on GitHub - 3 maintainers
mlg-assign 1.0.3
Application to add MLG2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
90 versions - Latest release: over 4 years ago - 6 dependent repositories - 410 downloads last month - 97 stars on GitHub - 2 maintainers
limix 3.0.4
Genetic analysis toolbox using mixed models90 versions - Latest release: over 4 years ago - 6 dependent repositories - 410 downloads last month - 97 stars on GitHub - 2 maintainers
timesweeper 1.4.1
A tool for detecting positive selective sweeps using time-series genomcis data.7 versions - Latest release: about 2 months ago - 33 downloads last month - 14 stars on GitHub - 1 maintainer
bio-aid 0.3.1
Genetic Analysis Tools22 versions - Latest release: 9 months ago - 26 downloads last month - 1 maintainer
funpipe 0.1.0
A pipeline for analyzing fungal genomic data1 version - Latest release: about 5 years ago - 1 dependent repositories - 7 downloads last month - 3 stars on GitHub - 1 maintainer
genotations 0.1.7
Genotations - python library to work with genomes and primers16 versions - Latest release: 9 months ago - 91 downloads last month - 2 stars on GitHub - 1 maintainer
genetictabler 2.0.3
A time table scheduler using Genetic algorithm(s).12 versions - Latest release: about 1 year ago - 1 dependent repositories - 40 downloads last month - 3 stars on GitHub - 2 maintainers
Top 8.1% on pypi.org
31 versions - Latest release: 2 months ago - 4 dependent repositories - 1.91 thousand downloads last month - 139 stars on GitHub - 1 maintainer
lineage 4.4.0
tools for genetic genealogy and the analysis of consumer DNA test results31 versions - Latest release: 2 months ago - 4 dependent repositories - 1.91 thousand downloads last month - 139 stars on GitHub - 1 maintainer
simulatesv 0.2.0
Simulate structural variations and SNPs with artificial dna sequences4 versions - Latest release: almost 7 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
genet 0.15.1
GenET: Genome Editing Toolkit50 versions - Latest release: 21 days ago - 1 dependent repositories - 384 downloads last month - 11 stars on GitHub - 1 maintainer
fwdpy11 0.22.2
Forward-time population genetic simulation in Python106 versions - Latest release: about 1 month ago - 1 dependent repositories - 2.45 thousand downloads last month - 27 stars on GitHub - 1 maintainer
genegist 0.1.5
Create summararies of groups of genes.6 versions - Latest release: 4 months ago - 51 downloads last month - 0 stars on GitHub - 1 maintainer
variant-extractor 4.0.6
Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files6 versions - Latest release: about 1 year ago - 1 dependent package - 66 downloads last month - 3 stars on GitHub - 1 maintainer
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
cutevariant 0.4.5 💰
GUI to visualize and process variant data36 versions - Latest release: about 1 year ago - 1 dependent repositories - 296 downloads last month - 89 stars on GitHub - 2 maintainers
gnomad-db 0.1.4
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. ...13 versions - Latest release: 7 months ago - 1 dependent repositories - 178 downloads last month - 27 stars on GitHub - 1 maintainer
varfish-cli 0.6.3
Command line interface client for VarFish Server.22 versions - Latest release: 4 months ago - 4 dependent repositories - 258 downloads last month - 2 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: 10 months ago - 35 downloads last month - 1 maintainer
moose-classifier 0.9
Alignment based taxonomic classifier4 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
gene-normalizer 0.2.10
VICC normalization routine for genes51 versions - Latest release: 10 months ago - 4 dependent packages - 6 dependent repositories - 2.72 thousand downloads last month - 1 stars on GitHub - 3 maintainers
seq-dove 0.4.4
Set of tools for downstream vcf analysis24 versions - Latest release: over 3 years ago - 1 dependent repositories - 112 downloads last month - 1 maintainer
Related Keywords
bioinformatics
61
genomics
38
python
29
biology
15
vcf
12
gwas
11
dna
9
variant
8
genome
7
evolution
6
phylogenetics
6
statistics
6
machine-learning
5
sequencing
5
ncbi
4
data-science
4
blast
4
analysis
4
pipeline
4
plink
4
hail
3
generation
3
linear
3
next
3
rna
3
simulation
3
population-genetics
3
mixed
3
coalescent
3
pandas
3
software
3
genotype
3
relatedness
3
genes
3
python3
3
population genetics
3
format
3
fasta
3
DNA
3
nonlinear
3
chromosomes
3
genetic
3
dimensionality-reduction
3
orthologues
3
sequence
3
reader
3
data
3
IBD
2
bam
2
files
2
computational
2
protein
2
MLMs
2
hgvs
2
risk
2
models
2
gct
2
gctx
2
gnomad
2
annotations
2
file-manipulation
2
Connectivity
2
Map
2
CMap
2
Broad
2
Institute
2
bash
2
snps
2
binary
2
auto-encoders
2
alignment
2
package
2
VCF
2
auto-encoder
2
autoencoder
2
autoencoders
2
keras
2
machine-learning-algorithms
2
deep-learning
2
nir
2
variant-prioritization
2
variant-filtration
2
varfish
2
population-structure
2
variants
2
human
2
spectral-analysis
2
ancestry
2
neural-networks
2
LMMs
2
BAM
2
unsupervised-clustering
2
sequence-alignment
2
model
2
sge
2
unsupervised-learning
2
epistasis
2
shell
2
variant-analysis
2
ai
2