Ecosyste.ms: Packages

bioinformatics 40 python 33 evolution 23 biology 14 genomics 14 phylogenomics 12 phylogeny 12 visualization 10 phylogenetic-trees 9 orthology 8 tree 8 taxonomy 8 computational-biology 6 genetics 6 population genetics 5 alignment 5 sequence-alignment 5 biopython 5 phylogeography 5 newick 5 molecular-evolution 5 orthology-inference 5 evolutionary-biology 4 pbs 4 microbial-genomics 4 comparative-genomics 4 nexus 4 pandas 3 protein 3 dna 3 phylodynamics 3 splitstree 3 visualisation 3 data-science 3 systematics 3 maximum-likelihood 3 orthologues 3 orthologs 3 tree visualization 3 science 3 evolutionary 3 pipeline 3 algorithms 3 single-cell 3 c-plus-plus 2 microbiome 2 hpc 2 cross-platform 2 gui 2 orthology-assignments 2 16s 2 microbiology 2 16S 2 statistical-methods 2 microbial ecology 2 QIIME 2 microbiome-analysis 2 qiime 2 slurm 2 fast 2 matplotlib 2 mrbayes 2 variational-inference 2 metagenomics 2 phylogenetic-analysis 2 tree reconstruction 2 variational 2 tree comparison 2 phylogenomic 2 pytorch 2 Bayes 2 trees 2 jax 2 bash 2 biosql 2 blast 2 numpyro 2 ftp 2 tumor phylogeny 2 ncbi 2 PASTML 2 beast2 2 single cell 2 timetree 2 qsub 2 sge 2 shell 2 phylogenies 2 cancer 2 coalescent 2 newick-format 2 population 2 phyloinformatics 2 bacteria 2 paup 2 simulation 2 machine-learning 2 protein-structure 2 orthology inference 2 q-residual 1