Ecosyste.ms: Packages

bioinformatics 36 python 29 rna-seq 20 deep-learning 20 scrna-seq 16 machine-learning 15 single-cell-rna-seq 14 genomics 14 single-cell-analysis 13 anndata 13 computational-biology 12 single-cell-genomics 12 transcriptomics 11 clustering 10 visualization 8 scanpy 7 data-science 7 pytorch 7 spatial-transcriptomics 7 data-visualization 6 spatial 6 bio-informatics 5 RNA-seq 5 manifold-learning 5 dimensionality-reduction 5 scRNA-seq 5 single cell 5 scverse 4 gene-expression 4 kinetics 4 pseudo-time 4 gene-regulatory-network 4 optimal-transport 4 biology 4 scatac-seq 4 multiomics 4 data-integration 4 evolution 3 spatialomics 3 integration 3 pip 3 variational-autoencoder 3 scRNAseq 3 scrna-seq-analysis 3 single-cell-omics 3 spatial transcriptomics 3 imputation 3 methylation 3 human-cell-atlas 3 epigenomics 3 epigenetics 3 multi-omics 3 embedding 3 multi-omic-integration 3 omics 3 network 3 cancer 3 pipeline 3 bulk-rna-seq 3 phylogenetics 3 semi-supervised-learning 3 data 3 cell-cell-communication 3 analysis 3 spatial data analysis 3 RNA 3 MERFISH 2 big-data 2 single-cell-multiomics 2 gencode 2 rna-velocity 2 co-expression 2 differential-expression 2 image analysis 2 phylostratigraphy 2 transcriptome 2 orthologs 2 algorithms 2 non-negative-matrix-factorization 2 gene age 2 grn 2 tumor phylogeny 2 orthomap 2 ligand-receptor 2 dynamical-systems 2 bayesian-inference 2 gtf 2 generative-model 2 statistics 2 jupyter 2 gff 2 time-series 2 unsupervised-learning 2 cell-type-classification 2 scalex 2 online-integration 2 spatial-omics 2 spatial-analysis 2 10x 2 seurat 2