bioconductor.org "GeneSignaling" keyword
View the packages on the bioconductor.org package registry that are tagged with the "GeneSignaling" keyword.
hipathia 3.8.0
HiPathia: High-throughput Pathway Analysis5 versions - Latest release: 3 months ago - 16.8 thousand downloads total - 1 maintainer
sSNAPPY 1.12.0
Single Sample directioNAl Pathway Perturbation analYsis6 versions - Latest release: 2 months ago - 7.86 thousand downloads total - 1 stars on GitHub - 1 maintainer
signifinder 1.10.0
Collection and implementation of public transcriptional cancer signatures6 versions - Latest release: 3 months ago - 4.48 thousand downloads total - 7 stars on GitHub - 1 maintainer
OmnipathR 3.16.0
OmniPath web service client and more7 versions - Latest release: 3 months ago - 3 dependent packages - 44 thousand downloads total - 1 maintainer
cosmosR 1.16.0
COSMOS (Causal Oriented Search of Multi-Omic Space)5 versions - Latest release: 3 months ago - 8.53 thousand downloads total - 61 stars on GitHub - 1 maintainer
nempi 1.16.0
Inferring unobserved perturbations from gene expression data5 versions - Latest release: 3 months ago - 6.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
wppi 1.16.0
Weighting protein-protein interactions5 versions - Latest release: 3 months ago - 7.38 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 9.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 34.5 thousand downloads total - 1 maintainer
EGSEA 1.36.0
Ensemble of Gene Set Enrichment Analyses6 versions - Latest release: 3 months ago - 1 dependent package - 34.5 thousand downloads total - 1 maintainer
escape 2.4.0
Easy single cell analysis platform for enrichment7 versions - Latest release: 3 months ago - 1 dependent package - 26 thousand downloads total - 1 maintainer
MetaboSignal 1.38.0
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways6 versions - Latest release: 3 months ago - 18.5 thousand downloads total - 2 maintainers
ASURAT 1.12.0
Functional annotation-driven unsupervised clustering for single-cell data5 versions - Latest release: 3 months ago - 6.25 thousand downloads total - 1 maintainer
Top 3.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 4 dependent packages - 114 thousand downloads total - 1 maintainer
RankProd 3.34.0
Rank Product method for identifying differentially expressed genes with application in meta-analysis5 versions - Latest release: 3 months ago - 4 dependent packages - 114 thousand downloads total - 1 maintainer
pathwayPCA 1.24.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection5 versions - Latest release: 3 months ago - 1 dependent package - 11.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
pwOmics 1.36.0 removed
Pathway-based data integration of omics data3 versions - Latest release: about 1 year ago - 15.7 thousand downloads total - 1 maintainer
Related Keywords
Software
14
Pathways
9
GeneExpression
8
SystemsBiology
7
Network
6
GeneTarget
6
GraphAndNetwork
5
SingleCell
5
Transcriptomics
4
Metabolomics
4
Proteomics
4
Classification
4
GeneSetEnrichment
4
DifferentialExpression
3
Annotation
3
RNASeq
3
Microarray
3
Sequencing
3
KEGG
3
MultipleComparison
2
Genetics
2
Lipidomics
2
CellBiology
2
Transcription
2
GO
2
ImmunoOncology
2
ThirdPartyClient
1
ReportWriting
1
NetworkEnrichment
1
OneChannel
1
TwoChannel
1
Reactome
1
Clustering
1
BiomedicalInformatics
1
ResearchField
1
StatisticalMethod
1
CopyNumberVariation
1
DNAMethylation
1
DimensionReduction
1
Epigenetics
1
FeatureExtraction
1
FunctionalGenomics
1
GenePrediction
1
GenomeWideAssociation
1
GenomicVariation
1
PrincipalComponent
1
Regression
1
SNP
1
Survival
1
GeneRegulation
1
DataRepresentation
1
data-integration
1
metabolomic-data
1
network-modelling
1
phosphoproteomics
1
proteomics
1
transcriptomics
1
ATACSeq
1
CRISPR
1
DataImport
1
DNASeq
1
Visualization
1
DifferentialMethylation
1
NetworkInference
1
NeuralNetwork
1
PooledScreens
1
gene-ontology
1
gene-prioritization
1
human-phenotype-ontology
1
omnipath
1
ppi-networks
1
random-walk-with-restart
1
Spatial
1