bioconductor.org "Survival" keyword
View the packages on the bioconductor.org package registry that are tagged with the "Survival" keyword.
MOSClip 1.2.2
Multi Omics Survival Clip4 versions - Latest release: about 1 month ago - 1.85 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 9 dependent packages - 281 thousand downloads total - 469 stars on GitHub - 1 maintainer
maftools 2.24.0 💰
Summarize, Analyze and Visualize MAF Files5 versions - Latest release: 3 months ago - 9 dependent packages - 281 thousand downloads total - 469 stars on GitHub - 1 maintainer
CoreGx 2.12.0
Classes and Functions to Serve as the Basis for Other 'Gx' Packages6 versions - Latest release: 3 months ago - 5 dependent packages - 26.3 thousand downloads total - 1 maintainer
GNOSIS 1.6.0
Genomics explorer using statistical and survival analysis in R4 versions - Latest release: 2 months ago - 4.15 thousand downloads total - 6 stars on GitHub - 1 maintainer
censcyt 1.16.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry5 versions - Latest release: 2 months ago - 6.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
7 versions - Latest release: 2 months ago - 7 dependent packages - 474 thousand downloads total - 321 stars on GitHub - 2 maintainers
TCGAbiolinks 2.36.0
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data7 versions - Latest release: 2 months ago - 7 dependent packages - 474 thousand downloads total - 321 stars on GitHub - 2 maintainers
GSgalgoR 1.18.0
An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatur...5 versions - Latest release: 3 months ago - 7.81 thousand downloads total - 15 stars on GitHub - 1 maintainer
TENET 1.0.1
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...2 versions - Latest release: about 2 months ago - 937 downloads total - 1 stars on GitHub - 1 maintainer
psichomics 1.34.0
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation6 versions - Latest release: 3 months ago - 18.9 thousand downloads total - 33 stars on GitHub - 1 maintainer
iPath 1.14.0
iPath pipeline for detecting perturbed pathways at individual level5 versions - Latest release: 3 months ago - 5.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
ClassifyR 3.12.2
A framework for cross-validated classification problems, with applications to differential variab...19 versions - Latest release: about 1 month ago - 4 dependent packages - 30.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
MPAC 1.2.0
Multi-omic Pathway Analysis of Cells2 versions - Latest release: 3 months ago - 2.06 thousand downloads total - 0 stars on GitHub - 1 maintainer
TOP 1.8.0
TOP Constructs Transferable Model Across Gene Expression Platforms5 versions - Latest release: 3 months ago - 4.21 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 43 thousand downloads total - 2 maintainers
GDCRNATools 1.28.0
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data i...5 versions - Latest release: 3 months ago - 43 thousand downloads total - 2 maintainers
kmcut 1.2.0
Optimized Kaplan Meier analysis and identification and validation of prognostic biomarkers2 versions - Latest release: 3 months ago - 1.96 thousand downloads total - 1 maintainer
ivygapSE 1.30.0
A SummarizedExperiment for Ivy-GAP data5 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 1 maintainer
survClust 1.2.0
Identification Of Clinically Relevant Genomic Subtypes Using Outcome Weighted Learning2 versions - Latest release: 3 months ago - 2.35 thousand downloads total - 16 stars on GitHub - 1 maintainer
CPSM 1.0.0
CPSM: Cancer patient survival model1 version - Latest release: 3 months ago - 959 downloads total - 1 stars on GitHub - 1 maintainer
CytoDx 1.28.0
Robust prediction of clinical outcomes using cytometry data without cell gating5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
gwasurvivr 1.26.0
gwasurvivr: an R package for genome wide survival analysis5 versions - Latest release: 3 months ago - 14.4 thousand downloads total - 12 stars on GitHub - 1 maintainer
PDATK 1.16.1
Pancreatic Ductal Adenocarcinoma Tool-Kit6 versions - Latest release: 2 months ago - 7.75 thousand downloads total - 1 stars on GitHub - 1 maintainer
fmrs 1.18.0
Variable Selection in Finite Mixture of AFT Regression and FMR Models5 versions - Latest release: 3 months ago - 9.75 thousand downloads total - 3 stars on GitHub - 1 maintainer
SCFA 1.18.0
SCFA: Subtyping via Consensus Factor Analysis5 versions - Latest release: 3 months ago - 6.92 thousand downloads total - 3 stars on GitHub - 1 maintainer
simpleSeg 1.10.1
A package to perform simple cell segmentation9 versions - Latest release: 29 days ago - 5.82 thousand downloads total - 0 stars on GitHub - 1 maintainer
survtype 1.24.0
Subtype Identification with Survival Data5 versions - Latest release: 3 months ago - 9.11 thousand downloads total - 1 maintainer
RadioGx 2.12.0
Analysis of Large-Scale Radio-Genomic Data5 versions - Latest release: 3 months ago - 9.5 thousand downloads total - 1 maintainer
rqt 1.34.0
rqt: utilities for gene-level meta-analysis5 versions - Latest release: 3 months ago - 11.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
findIPs 1.4.0
Influential Points Detection for Feature Rankings3 versions - Latest release: 3 months ago - 3.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
MoonlightR 1.34.0
Identify oncogenes and tumor suppressor genes from omics data5 versions - Latest release: 3 months ago - 16.1 thousand downloads total - 17 stars on GitHub - 1 maintainer
miRspongeR 2.12.0
Identification and analysis of miRNA sponge regulation6 versions - Latest release: 3 months ago - 1 dependent package - 9.15 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 82.6 thousand downloads total - 51 stars on GitHub - 1 maintainer
RTCGA 1.38.0
The Cancer Genome Atlas Data Integration5 versions - Latest release: 3 months ago - 1 dependent package - 82.6 thousand downloads total - 51 stars on GitHub - 1 maintainer
glmSparseNet 1.26.0
Network Centrality Metrics for Elastic-Net Regularized Models6 versions - Latest release: 3 months ago - 80.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
SVMDO 1.8.0
Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by D...8 versions - Latest release: 3 months ago - 5.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Moonlight2R 1.6.0
Identify oncogenes and tumor suppressor genes from omics data4 versions - Latest release: 3 months ago - 4.08 thousand downloads total - 5 stars on GitHub - 1 maintainer
rnaEditr 1.18.0
Statistical analysis of RNA editing sites and hyper-editing regions5 versions - Latest release: 3 months ago - 7.13 thousand downloads total - 3 stars on GitHub - 1 maintainer
geneClassifiers 1.32.0
Application of gene classifiers5 versions - Latest release: 3 months ago - 13 thousand downloads total - 1 maintainer
CFAssay 1.42.0
Statistical analysis for the Colony Formation Assay5 versions - Latest release: 3 months ago - 19 thousand downloads total - 1 maintainer
RTNsurvival 1.32.0
Survival analysis using transcriptional networks inferred by the RTN package5 versions - Latest release: 3 months ago - 13 thousand downloads total - 2 maintainers
messina 1.44.0
Single-gene classifiers and outlier-resistant detection of differential expression for two-group ...5 versions - Latest release: 3 months ago - 19.6 thousand downloads total - 1 maintainer
compSPOT 1.6.0
compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots4 versions - Latest release: 3 months ago - 3.62 thousand downloads total - 0 stars on GitHub - 1 maintainer
iNETgrate 1.6.0
Integrates DNA methylation data with gene expression in a single gene network4 versions - Latest release: 3 months ago - 4.25 thousand downloads total - 65 stars on GitHub - 1 maintainer
RLassoCox 1.16.0
A reweighted Lasso-Cox by integrating gene interaction information5 versions - Latest release: 3 months ago - 6.44 thousand downloads total - 3 stars on GitHub - 1 maintainer
multiClust 1.38.0
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome P...5 versions - Latest release: 3 months ago - 18.7 thousand downloads total - 1 maintainer
roastgsa 1.6.0
Rotation based gene set analysis4 versions - Latest release: 3 months ago - 3.81 thousand downloads total - 0 stars on GitHub - 1 maintainer
pathwayPCA 1.24.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection5 versions - Latest release: 3 months ago - 1 dependent package - 11.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
OmicsLonDA 1.18.0 removed
Omics Longitudinal Differential Analysis2 versions - Latest release: over 1 year ago - 5.95 thousand downloads total - 5 stars on GitHub - 1 maintainer
GRridge 1.26.0 removed
Better prediction by use of co-data: Adaptive group-regularized ridge regression2 versions - Latest release: over 1 year ago - 7.94 thousand downloads total - 1 maintainer
Related Keywords
Software
47
GeneExpression
24
Classification
18
Regression
14
RNASeq
11
Clustering
10
DifferentialExpression
10
Sequencing
10
ImmunoOncology
9
Pathways
8
BiomedicalInformatics
8
GeneSetEnrichment
8
Network
7
Transcriptomics
7
DNAMethylation
7
GeneRegulation
6
CellBiology
6
Visualization
6
Transcription
6
StatisticalMethod
6
DimensionReduction
6
MultipleComparison
5
PrincipalComponent
5
NetworkEnrichment
5
GenePrediction
5
GraphAndNetwork
5
FeatureExtraction
5
Epigenetics
4
Normalization
4
Pharmacogenomics
4
GeneTarget
4
Proteomics
4
SingleCell
4
DifferentialMethylation
4
MethylationArray
4
FunctionalGenomics
4
GenomeWideAssociation
3
Genetics
3
NetworkInference
3
KEGG
3
Microarray
3
SystemsBiology
3
Metabolomics
3
tcga
3
CellBasedAssays
3
GUI
3
DNASeq
2
GO
2
Technology
2
DataRepresentation
2
SNP
2
Pharmacogenetics
2
Spatial
2
QualityControl
2
DataImport
2
Preprocessing
2
mRNAMicroarray
2
Bayesian
2
TimeCourse
2
Lipidomics
2
bioconductor
2
AlternativeSplicing
2
FlowCytometry
2
DifferentialSplicing
2
r
2
r-package
1
cran
1
core-services
1
genomics
1
cancer-genomics
1
WholeGenome
1
transcriptomics
1
shiny
1
rna-seq
1
machine-learning
1
cancer-genome-atlas
1
bioinformatics
1
sponge
1
BatchEffect
1
maf-files
1
Cheminformatics
1
ExonArray
1
MicroRNAArray
1
OneChannel
1
ProprietaryPlatforms
1
TwoChannel
1
CopyNumberVariation
1
GeneSignaling
1
GenomicVariation
1
ShinyApps
1
Microbiome
1
alternative-splicing
1
data-analyses
1
differential-gene-expression
1
differential-splicing-analysis
1
gene-expression
1
gtex
1
recount2
1
rna-seq-data
1
splicing-quantification
1