Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "Survival" keyword
Top 1.5% on bioconductor.org
3 versions - Latest release: 20 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
maftools 2.20.0 💰
Summarize, Analyze and Visualize MAF Files3 versions - Latest release: 20 days ago - 9 dependent packages - 226 thousand downloads total - 421 stars on GitHub - 1 maintainer
RLassoCox 1.10.0
A reweighted Lasso-Cox by integrating gene interaction information3 versions - Latest release: 6 months ago - 3.15 thousand downloads total - 3 stars on GitHub - 1 maintainer
iPath 1.8.0
iPath pipeline for detecting perturbed pathways at individual level3 versions - Latest release: 6 months ago - 2.34 thousand downloads total - 2 stars on GitHub - 1 maintainer
Moonlight2R 1.2.0
Identify oncogenes and tumor suppressor genes from omics data2 versions - Latest release: 20 days ago - 1.06 thousand downloads total - 4 stars on GitHub - 1 maintainer
CoreGx 2.6.1
Classes and Functions to Serve as the Basis for Other 'Gx' Packages4 versions - Latest release: 2 months ago - 5 dependent packages - 17.1 thousand downloads total - 1 maintainer
fmrs 1.12.0
Variable Selection in Finite Mixture of AFT Regression and FMR Models3 versions - Latest release: 6 months ago - 5.47 thousand downloads total - 3 stars on GitHub - 1 maintainer
ivygapSE 1.24.0
A SummarizedExperiment for Ivy-GAP data3 versions - Latest release: 6 months ago - 7.8 thousand downloads total - 1 maintainer
miRspongeR 2.6.0
Identification and analysis of miRNA sponge regulation3 versions - Latest release: 6 months ago - 1 dependent package - 6.08 thousand downloads total - 5 stars on GitHub - 1 maintainer
CytoDx 1.22.0
Robust prediction of clinical outcomes using cytometry data without cell gating3 versions - Latest release: 6 months ago - 7.94 thousand downloads total - 1 maintainer
messina 1.38.0
Single-gene classifiers and outlier-resistant detection of differential expression for two-group ...3 versions - Latest release: 6 months ago - 15.3 thousand downloads total - 1 maintainer
SCFA 1.12.0
SCFA: Subtyping via Consensus Factor Analysis3 versions - Latest release: 6 months ago - 3.45 thousand downloads total - 3 stars on GitHub - 1 maintainer
GRridge 1.26.0 removed
Better prediction by use of co-data: Adaptive group-regularized ridge regression2 versions - Latest release: 6 months ago - 7.94 thousand downloads total - 1 maintainer
survtype 1.18.0
Subtype Identification with Survival Data3 versions - Latest release: 6 months ago - 5.54 thousand downloads total - 1 maintainer
multiClust 1.32.0
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome P...3 versions - Latest release: 6 months ago - 14.3 thousand downloads total - 1 maintainer
CFAssay 1.36.0
Statistical analysis for the Colony Formation Assay3 versions - Latest release: 6 months ago - 15.4 thousand downloads total - 1 maintainer
simpleSeg 1.6.0
A package to perform simple cell segmentation4 versions - Latest release: 13 days ago - 1.88 thousand downloads total - 0 stars on GitHub - 1 maintainer
PDATK 1.10.0
Pancreatic Ductal Adenocarcinoma Tool-Kit3 versions - Latest release: 6 months ago - 3.37 thousand downloads total - 1 stars on GitHub - 1 maintainer
RTNsurvival 1.26.0
Survival analysis using transcriptional networks inferred by the RTN package3 versions - Latest release: 6 months ago - 8.93 thousand downloads total - 2 maintainers
TOP 1.2.0
TOP Constructs Transferable Model Across Gene Expression Platforms3 versions - Latest release: 6 months ago - 1.18 thousand downloads total - 0 stars on GitHub - 1 maintainer
geneClassifiers 1.26.0
Application of gene classifiers3 versions - Latest release: 6 months ago - 8.67 thousand downloads total - 1 maintainer
rnaEditr 1.12.0
Statistical analysis of RNA editing sites and hyper-editing regions3 versions - Latest release: 6 months ago - 3.35 thousand downloads total - 3 stars on GitHub - 1 maintainer
RadioGx 2.6.0
Analysis of Large-Scale Radio-Genomic Data3 versions - Latest release: 6 months ago - 4.26 thousand downloads total - 1 maintainer
rqt 1.28.0
rqt: utilities for gene-level meta-analysis3 versions - Latest release: 6 months ago - 8.75 thousand downloads total - 2 stars on GitHub - 1 maintainer
MoonlightR 1.30.0
Identify oncogenes and tumor suppressor genes from omics data3 versions - Latest release: 20 days ago - 11.7 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
4 versions - Latest release: 12 days ago - 7 dependent packages - 364 thousand downloads total - 274 stars on GitHub - 2 maintainers
TCGAbiolinks 2.32.0
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data4 versions - Latest release: 12 days ago - 7 dependent packages - 364 thousand downloads total - 274 stars on GitHub - 2 maintainers
SVMDO 1.4.0
Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by D...5 versions - Latest release: 13 days ago - 1.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
iNETgrate 1.2.0
Integrates DNA methylation data with gene expression in a single gene network2 versions - Latest release: 13 days ago - 970 downloads total - 65 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
3 versions - Latest release: 13 days ago - 1 dependent package - 70 thousand downloads total - 52 stars on GitHub - 1 maintainer
RTCGA 1.34.0
The Cancer Genome Atlas Data Integration3 versions - Latest release: 13 days ago - 1 dependent package - 70 thousand downloads total - 52 stars on GitHub - 1 maintainer
psichomics 1.30.0
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation4 versions - Latest release: 15 days ago - 14.4 thousand downloads total - 33 stars on GitHub - 1 maintainer
ClassifyR 3.8.0
A framework for cross-validated classification problems, with applications to differential variab...7 versions - Latest release: 20 days ago - 4 dependent packages - 21.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
glmSparseNet 1.22.0
Network Centrality Metrics for Elastic-Net Regularized Models4 versions - Latest release: 20 days ago - 8.83 thousand downloads total - 3 stars on GitHub - 1 maintainer
findIPs 1.0.0
Influential Points Detection for Feature Rankings1 version - Latest release: 21 days ago - 0 stars on GitHub - 1 maintainer
GNOSIS 1.0.0
Genomics explorer using statistical and survival analysis in R1 version - Latest release: 7 months ago - 705 downloads total - 2 stars on GitHub - 1 maintainer
censcyt 1.10.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry2 versions - Latest release: 6 months ago - 3.07 thousand downloads total - 0 stars on GitHub - 1 maintainer
roastgsa 1.0.0
Rotation based gene set analysis1 version - Latest release: 7 months ago - 569 downloads total - 0 stars on GitHub - 1 maintainer
compSPOT 1.0.0
compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots1 version - Latest release: 7 months ago - 563 downloads total - 0 stars on GitHub - 1 maintainer
pathwayPCA 1.18.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection2 versions - Latest release: 6 months ago - 1 dependent package - 7.17 thousand downloads total - 11 stars on GitHub - 1 maintainer
gwasurvivr 1.20.0
gwasurvivr: an R package for genome wide survival analysis2 versions - Latest release: 6 months ago - 9.23 thousand downloads total - 9 stars on GitHub - 1 maintainer
GSgalgoR 1.12.0
An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatur...2 versions - Latest release: 6 months ago - 3.43 thousand downloads total - 15 stars on GitHub - 1 maintainer
OmicsLonDA 1.18.0
Omics Longitudinal Differential Analysis2 versions - Latest release: 6 months ago - 5.95 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
2 versions - Latest release: 6 months ago - 35.7 thousand downloads total - 2 maintainers
GDCRNATools 1.22.0
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data i...2 versions - Latest release: 6 months ago - 35.7 thousand downloads total - 2 maintainers
Related Keywords
Software
41
GeneExpression
21
Classification
17
Regression
13
RNASeq
9
DifferentialExpression
9
ImmunoOncology
8
Sequencing
8
Clustering
8
GeneSetEnrichment
8
Network
7
Pathways
7
BiomedicalInformatics
7
DNAMethylation
6
Transcriptomics
6
CellBiology
5
GeneRegulation
5
NetworkEnrichment
5
DimensionReduction
5
Transcription
5
GenePrediction
5
PrincipalComponent
5
Visualization
5
FeatureExtraction
5
StatisticalMethod
4
MultipleComparison
4
Proteomics
4
GraphAndNetwork
4
SingleCell
4
Pharmacogenomics
4
SystemsBiology
3
NetworkInference
3
Epigenetics
3
GUI
3
GeneTarget
3
Normalization
3
KEGG
3
CellBasedAssays
3
GenomeWideAssociation
3
Microarray
3
MethylationArray
3
DifferentialMethylation
3
tcga
3
FunctionalGenomics
3
Metabolomics
3
SNP
2
Lipidomics
2
Genetics
2
QualityControl
2
TimeCourse
2
DifferentialSplicing
2
AlternativeSplicing
2
Preprocessing
2
DataImport
2
bioconductor
2
mRNAMicroarray
2
Pharmacogenetics
2
Spatial
2
GO
2
Bayesian
2
DNASeq
2
FlowCytometry
2
DataRepresentation
2
r
2
VariantAnnotation
1
ExonArray
1
Cheminformatics
1
BatchEffect
1
bioinformatics
1
ShinyApps
1
vast-tools
1
survival
1
sra
1
splicing-quantification
1
rna-seq-data
1
recount2
1
MicroRNAArray
1
OneChannel
1
ProprietaryPlatforms
1
SomaticMutation
1
TwoChannel
1
Technology
1
WholeGenome
1
CopyNumberVariation
1
GeneSignaling
1
DriverMutation
1
GenomicVariation
1
GeneticVariability
1
Microbiome
1
spatial-statistics
1
Coverage
1
bioc
1
gdc
1
integrative-analysis
1
tcga-data
1
tcgabiolinks
1
sponge
1
mirna
1
machine-learning
1
rna-seq
1