bioconductor.org "Survival" keyword
Top 2.7% on bioconductor.org
9 versions - Latest release: 6 months ago - 7 dependent packages - 664 thousand downloads total - 354 stars on GitHub - 2 maintainers
TCGAbiolinks 2.40.0
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data9 versions - Latest release: 6 months ago - 7 dependent packages - 664 thousand downloads total - 354 stars on GitHub - 2 maintainers
miRspongeR 2.16.2
Identification and analysis of miRNA sponge regulation10 versions - Latest release: about 1 month ago - 1 dependent package - 27 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
7 versions - Latest release: 6 months ago - 9 dependent packages - 381 thousand downloads total - 505 stars on GitHub - 1 maintainer
maftools 2.28.0 💰
Summarize, Analyze and Visualize MAF Files7 versions - Latest release: 6 months ago - 9 dependent packages - 381 thousand downloads total - 505 stars on GitHub - 1 maintainer
kmcut 1.6.0
Optimized Kaplan Meier analysis and identification and validation of prognostic biomarkers4 versions - Latest release: 5 months ago - 12.6 thousand downloads total - 1 maintainer
GNOSIS 1.10.0
Genomics explorer using statistical and survival analysis in R6 versions - Latest release: 5 months ago - 15.5 thousand downloads total - 7 stars on GitHub - 1 maintainer
CFAssay 1.46.0
Statistical analysis for the Colony Formation Assay7 versions - Latest release: 6 months ago - 29.4 thousand downloads total - 1 maintainer
multiClust 1.42.0
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome P...7 versions - Latest release: 6 months ago - 35 thousand downloads total - 1 maintainer
PDATK 1.20.0
Pancreatic Ductal Adenocarcinoma Tool-Kit8 versions - Latest release: 5 months ago - 21.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
asuri 1.0.0
Analysis of SUrvival and RIsk prediction in patients based on gene signatures1 version - Latest release: 6 months ago - 7.35 thousand downloads total - 0 stars on GitHub - 1 maintainer
iPath 1.18.0
iPath pipeline for detecting perturbed pathways at individual level7 versions - Latest release: 5 months ago - 15.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
ClassifyR 3.16.0
A framework for cross-validated classification problems, with applications to differential variab...23 versions - Latest release: 5 months ago - 4 dependent packages - 54.4 thousand downloads total - 6 stars on GitHub - 1 maintainer
CPSM 1.4.0
CPSM: Cancer patient survival model3 versions - Latest release: 5 months ago - 11.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
fmrs 1.22.0
Variable Selection in Finite Mixture of AFT Regression and FMR Models7 versions - Latest release: 6 months ago - 16.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
SVMDO 1.11.0
Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by D...10 versions - Latest release: 6 months ago - 11.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
compSPOT 1.10.0
compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots6 versions - Latest release: 6 months ago - 8.81 thousand downloads total - 0 stars on GitHub - 1 maintainer
LACHESIS 1.0.0
Functions used to analyze early tumor evolution from whole genome sequencing data1 version - Latest release: 6 months ago - 7.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
TOP 1.12.0
TOP Constructs Transferable Model Across Gene Expression Platforms7 versions - Latest release: 5 months ago - 10.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
psichomics 1.38.1
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation10 versions - Latest release: 5 months ago - 30 thousand downloads total - 37 stars on GitHub - 1 maintainer
survClust 1.6.0
Identification Of Clinically Relevant Genomic Subtypes Using Outcome Weighted Learning4 versions - Latest release: 5 months ago - 7.99 thousand downloads total - 16 stars on GitHub - 1 maintainer
glmSparseNet 1.30.0
Network Centrality Metrics for Elastic-Net Regularized Models8 versions - Latest release: 6 months ago - 114 thousand downloads total - 6 stars on GitHub - 1 maintainer
gwasurvivr 1.30.0
gwasurvivr: an R package for genome wide survival analysis7 versions - Latest release: 6 months ago - 23.2 thousand downloads total - 13 stars on GitHub - 1 maintainer
roastgsa 1.10.0
Rotation based gene set analysis6 versions - Latest release: 5 months ago - 11.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
TENET 1.4.0
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...4 versions - Latest release: 6 months ago - 6.98 thousand downloads total - 2 stars on GitHub - 1 maintainer
MoonlightR 1.38.0
Identify oncogenes and tumor suppressor genes from omics data7 versions - Latest release: 5 months ago - 26.3 thousand downloads total - 17 stars on GitHub - 1 maintainer
rqt 1.38.0
rqt: utilities for gene-level meta-analysis7 versions - Latest release: 5 months ago - 19.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
findIPs 1.8.0
Influential Points Detection for Feature Rankings5 versions - Latest release: 5 months ago - 9.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
rnaEditr 1.22.0
Statistical analysis of RNA editing sites and hyper-editing regions7 versions - Latest release: 6 months ago - 15 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
7 versions - Latest release: 6 months ago - 56.6 thousand downloads total - 2 maintainers
GDCRNATools 1.32.0
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data i...7 versions - Latest release: 6 months ago - 56.6 thousand downloads total - 2 maintainers
simpleSeg 1.14.0
A package to perform simple cell segmentation11 versions - Latest release: 6 months ago - 16.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
SCFA 1.22.0
SCFA: Subtyping via Consensus Factor Analysis7 versions - Latest release: 5 months ago - 13.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
RTNsurvival 1.36.0
Survival analysis using transcriptional networks inferred by the RTN package8 versions - Latest release: 5 months ago - 20.3 thousand downloads total - 2 maintainers
MPAC 1.6.0
Multi-omic Pathway Analysis of Cells4 versions - Latest release: 5 months ago - 7.34 thousand downloads total - 0 stars on GitHub - 1 maintainer
Moonlight2R 1.10.1
Identify oncogenes and tumor suppressor genes from omics data9 versions - Latest release: 4 months ago - 12.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
MOSClip 1.6.0
Multi Omics Survival Clip7 versions - Latest release: 5 months ago - 8.13 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
7 versions - Latest release: 6 months ago - 1 dependent package - 106 thousand downloads total - 51 stars on GitHub - 1 maintainer
RTCGA 1.41.0
The Cancer Genome Atlas Data Integration7 versions - Latest release: 6 months ago - 1 dependent package - 106 thousand downloads total - 51 stars on GitHub - 1 maintainer
GSgalgoR 1.22.0
An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatur...7 versions - Latest release: 5 months ago - 15 thousand downloads total - 15 stars on GitHub - 1 maintainer
censcyt 1.20.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry7 versions - Latest release: 6 months ago - 14.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
RadioGx 2.16.0
Analysis of Large-Scale Radio-Genomic Data7 versions - Latest release: 6 months ago - 25.4 thousand downloads total - 1 maintainer
ivygapSE 1.34.0
A SummarizedExperiment for Ivy-GAP data7 versions - Latest release: 5 months ago - 24.7 thousand downloads total - 1 maintainer
messina 1.48.0
Single-gene classifiers and outlier-resistant detection of differential expression for two-group ...7 versions - Latest release: 5 months ago - 34.7 thousand downloads total - 1 maintainer
iNETgrate 1.10.0
Integrates DNA methylation data with gene expression in a single gene network7 versions - Latest release: 6 months ago - 16.1 thousand downloads total - 65 stars on GitHub - 1 maintainer
survtype 1.28.0
Subtype Identification with Survival Data7 versions - Latest release: 6 months ago - 20.4 thousand downloads total - 1 maintainer
geneClassifiers 1.36.0
Application of gene classifiers7 versions - Latest release: 6 months ago - 26.8 thousand downloads total - 1 maintainer
RLassoCox 1.20.0
A reweighted Lasso-Cox by integrating gene interaction information7 versions - Latest release: 6 months ago - 15.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
CoreGx 2.16.0
Classes and Functions to Serve as the Basis for Other 'Gx' Packages8 versions - Latest release: 5 months ago - 5 dependent packages - 58.4 thousand downloads total - 1 maintainer
OmicsLonDA 1.18.0 removed
Omics Longitudinal Differential Analysis2 versions - Latest release: almost 3 years ago - 5.95 thousand downloads total - 7 stars on GitHub - 1 maintainer
CytoDx 1.32.0
Robust prediction of clinical outcomes using cytometry data without cell gating7 versions - Latest release: 6 months ago - 22.5 thousand downloads total - 1 maintainer
pathwayPCA 1.28.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection7 versions - Latest release: 5 months ago - 1 dependent package - 24.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
GRridge 1.26.0 removed
Better prediction by use of co-data: Adaptive group-regularized ridge regression2 versions - Latest release: almost 3 years ago - 7.94 thousand downloads total - 1 maintainer
Related Keywords
Software
49
GeneExpression
25
Classification
18
Regression
15
Sequencing
11
DifferentialExpression
11
RNASeq
11
Clustering
10
ImmunoOncology
9
StatisticalMethod
8
Pathways
8
GeneSetEnrichment
8
BiomedicalInformatics
8
Transcriptomics
7
DNAMethylation
7
Network
7
Visualization
7
Transcription
6
MultipleComparison
6
GeneRegulation
6
DimensionReduction
6
GenePrediction
6
FeatureExtraction
6
CellBiology
6
NetworkEnrichment
5
PrincipalComponent
5
GraphAndNetwork
5
GeneTarget
4
FunctionalGenomics
4
Normalization
4
DifferentialMethylation
4
Microarray
4
Epigenetics
4
Pharmacogenomics
4
MethylationArray
4
Proteomics
4
SingleCell
4
Preprocessing
3
KEGG
3
tcga
3
TimeCourse
3
Metabolomics
3
Genetics
3
GenomeWideAssociation
3
NetworkInference
3
SystemsBiology
3
CellBasedAssays
3
GUI
3
r
2
FlowCytometry
2
Spatial
2
Pharmacogenetics
2
Lipidomics
2
SNP
2
mRNAMicroarray
2
QualityControl
2
ExonArray
2
GO
2
DifferentialSplicing
2
Technology
2
DNASeq
2
DataRepresentation
2
DataImport
2
bioconductor
2
AlternativeSplicing
2
Bayesian
2
SomaticMutation
2
WholeGenome
2
r-package
2
maf-files
1
genomics
1
cancer-genomics
1
cancer-genome-atlas
1
bioinformatics
1
VariantAnnotation
1
DriverMutation
1
MethylSeq
1
HistoneModification
1
Reactome
1
Coverage
1
CopyNumberVariation
1
GeneSignaling
1
GenomicVariation
1
core-services
1
cran
1
bioc
1
gdc
1
integrative-analysis
1
tcga-data
1
tcgabiolinks
1
WorkflowStep
1
spatial-statistics
1
cerna
1
mirna
1
sponge
1
ShinyApps
1
vast-tools
1
survival
1
sra
1
splicing-quantification
1