bioconductor.org "CellBiology" keyword
View the packages on the bioconductor.org package registry that are tagged with the "CellBiology" keyword.
Top 0.3% on bioconductor.org
14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
limma 3.64.1
Linear Models for Microarray and Omics Data14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
diffcyt 1.28.0
Differential discovery in high-dimensional cytometry via high-resolution clustering7 versions - Latest release: 3 months ago - 5 dependent packages - 39.2 thousand downloads total - 20 stars on GitHub - 1 maintainer
Top 0.6% on bioconductor.org
23 versions - Latest release: 16 days ago - 181 dependent packages - 3.6 million downloads total - 4 maintainers
edgeR 4.6.3
Empirical Analysis of Digital Gene Expression Data in R23 versions - Latest release: 16 days ago - 181 dependent packages - 3.6 million downloads total - 4 maintainers
Top 3.3% on bioconductor.org
5 versions - Latest release: 2 months ago - 4 dependent packages - 152 thousand downloads total - 86 stars on GitHub - 1 maintainer
destiny 3.22.0
Creates diffusion maps5 versions - Latest release: 2 months ago - 4 dependent packages - 152 thousand downloads total - 86 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
5 versions - Latest release: 2 months ago - 3 dependent packages - 154 thousand downloads total - 1 maintainer
FlowSOM 2.16.0
Using self-organizing maps for visualization and interpretation of cytometry data5 versions - Latest release: 2 months ago - 3 dependent packages - 154 thousand downloads total - 1 maintainer
censcyt 1.16.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry5 versions - Latest release: 2 months ago - 6.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
SpaNorm 1.2.0
Spatially-aware normalisation for spatial transcriptomics data2 versions - Latest release: 3 months ago - 2.14 thousand downloads total - 10 stars on GitHub - 1 maintainer
flowcatchR 1.42.0
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells5 versions - Latest release: 3 months ago - 20.6 thousand downloads total - 4 stars on GitHub - 1 maintainer
CCPlotR 1.6.0
Plots For Visualising Cell-Cell Interactions4 versions - Latest release: 3 months ago - 4.5 thousand downloads total - 44 stars on GitHub - 1 maintainer
TENET 1.0.1
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...2 versions - Latest release: about 2 months ago - 937 downloads total - 1 stars on GitHub - 1 maintainer
CytoGLMM 1.16.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments5 versions - Latest release: 3 months ago - 1 dependent package - 7.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 8.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 37.8 thousand downloads total - 2 maintainers
CRImage 1.56.0
CRImage a package to classify cells and calculate tumour cellularity5 versions - Latest release: 3 months ago - 37.8 thousand downloads total - 2 maintainers
CNORode 1.50.0
ODE add-on to CellNOptR5 versions - Latest release: 3 months ago - 1 dependent package - 31.4 thousand downloads total - 1 maintainer
debCAM 1.26.0
Deconvolution by Convex Analysis of Mixtures5 versions - Latest release: 3 months ago - 12 thousand downloads total - 1 maintainer
uSORT 1.34.0
uSORT: A self-refining ordering pipeline for gene selection5 versions - Latest release: 3 months ago - 14 thousand downloads total - 1 maintainer
CytoDx 1.28.0
Robust prediction of clinical outcomes using cytometry data without cell gating5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
SiPSiC 1.8.0
Calculate Pathway Scores for Each Cell in scRNA-Seq Data9 versions - Latest release: 3 months ago - 4.43 thousand downloads total - 1 maintainer
cosmosR 1.16.0
COSMOS (Causal Oriented Search of Multi-Omic Space)5 versions - Latest release: 3 months ago - 8.53 thousand downloads total - 61 stars on GitHub - 1 maintainer
mistyR 1.16.0
Multiview Intercellular SpaTial modeling framework6 versions - Latest release: 3 months ago - 8.81 thousand downloads total - 44 stars on GitHub - 1 maintainer
cellmigRation 1.16.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics5 versions - Latest release: 3 months ago - 6.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
CyTOFpower 1.13.1
Power analysis for CyTOF experiments5 versions - Latest release: 3 months ago - 4.14 thousand downloads total - 1 maintainer
LiquidAssociation 1.62.0
LiquidAssociation5 versions - Latest release: 3 months ago - 1 dependent package - 31.8 thousand downloads total - 1 maintainer
fastLiquidAssociation 1.44.0
functions for genome-wide application of Liquid Association5 versions - Latest release: 3 months ago - 19.9 thousand downloads total - 1 maintainer
Top 6.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 3 dependent packages - 61.6 thousand downloads total - 1 maintainer
cn.mops 1.54.0
cn.mops - Mixture of Poissons for CNV detection in NGS data5 versions - Latest release: 3 months ago - 3 dependent packages - 61.6 thousand downloads total - 1 maintainer
metaseqR2 1.20.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...5 versions - Latest release: 3 months ago - 9.37 thousand downloads total - 1 maintainer
ternarynet 1.52.0
Ternary Network Estimation5 versions - Latest release: 3 months ago - 23.2 thousand downloads total - 1 maintainer
CONFESS 1.36.0
Cell OrderiNg by FluorEScence Signal5 versions - Latest release: 3 months ago - 15.2 thousand downloads total - 1 maintainer
flowMeans 1.68.0
Non-parametric Flow Cytometry Data Gating5 versions - Latest release: 3 months ago - 2 dependent packages - 52.3 thousand downloads total - 1 maintainer
staRank 1.50.0
Stability Ranking5 versions - Latest release: 3 months ago - 21.7 thousand downloads total - 1 maintainer
tRanslatome 1.46.0
Comparison between multiple levels of gene expression5 versions - Latest release: 3 months ago - 25.3 thousand downloads total - 2 maintainers
frenchFISH 1.20.0
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections5 versions - Latest release: 3 months ago - 6.99 thousand downloads total - 1 maintainer
netresponse 1.68.0
Functional Network Analysis5 versions - Latest release: 3 months ago - 30 thousand downloads total - 3 stars on GitHub - 1 maintainer
GRmetrics 1.34.0
Calculate growth-rate inhibition (GR) metrics5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 stars on GitHub - 2 maintainers
CNORfeeder 1.48.0
Integration of CellNOptR to add missing links5 versions - Latest release: 3 months ago - 26.1 thousand downloads total - 1 maintainer
scatterHatch 1.14.0
Creates hatched patterns for scatterplots5 versions - Latest release: 3 months ago - 5.24 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 7.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 3 dependent packages - 43.9 thousand downloads total - 1 maintainer
flowDensity 1.42.0
Sequential Flow Cytometry Data Gating5 versions - Latest release: 3 months ago - 3 dependent packages - 43.9 thousand downloads total - 1 maintainer
GateFinder 1.28.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 1 maintainer
OVESEG 1.24.0
OVESEG-test to detect tissue/cell-specific markers5 versions - Latest release: 3 months ago - 9.21 thousand downloads total - 1 stars on GitHub - 1 maintainer
spatialHeatmap 2.14.1
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions14 versions - Latest release: 29 days ago - 11.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 2.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 266 thousand downloads total - 1 maintainer
DiffBind 3.18.0
Differential Binding Analysis of ChIP-Seq Peak Data5 versions - Latest release: 3 months ago - 2 dependent packages - 266 thousand downloads total - 1 maintainer
CNORdt 1.50.0
Add-on to CellNOptR: Discretized time treatments5 versions - Latest release: 3 months ago - 25.8 thousand downloads total - 1 maintainer
dearseq 1.20.0
Differential Expression Analysis for RNA-seq data through a robust variance component test5 versions - Latest release: 3 months ago - 2 dependent packages - 16 thousand downloads total - 6 stars on GitHub - 1 maintainer
GenomicOZone 1.22.0
Delineate outstanding genomic zones of differential gene activity5 versions - Latest release: 3 months ago - 9.18 thousand downloads total - 1 maintainer
MPRAnalyze 1.26.0
Statistical Analysis of MPRA data5 versions - Latest release: 3 months ago - 10.5 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 7.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 37.3 thousand downloads total - 1 maintainer
SamSPECTRAL 1.62.0
Identifies cell population in flow cytometry data5 versions - Latest release: 3 months ago - 2 dependent packages - 37.3 thousand downloads total - 1 maintainer
midasHLA 1.16.0
R package for immunogenomics data handling and association analysis5 versions - Latest release: 3 months ago - 9.35 thousand downloads total - 1 maintainer
BASiCStan 1.10.0
Stan implementation of BASiCS5 versions - Latest release: 3 months ago - 5.37 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 6.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 3 dependent packages - 60.8 thousand downloads total - 1 maintainer
hpar 1.50.0
Human Protein Atlas in R5 versions - Latest release: 3 months ago - 3 dependent packages - 60.8 thousand downloads total - 1 maintainer
airpart 1.16.0
Differential cell-type-specific allelic imbalance5 versions - Latest release: 3 months ago - 8.99 thousand downloads total - 2 stars on GitHub - 1 maintainer
gCrisprTools 2.14.0
Suite of Functions for Pooled Crispr Screen QC and Analysis5 versions - Latest release: 3 months ago - 15.9 thousand downloads total - 1 maintainer
BASiCS 2.20.0
Bayesian Analysis of Single-Cell Sequencing data5 versions - Latest release: 3 months ago - 2 dependent packages - 23.9 thousand downloads total - 83 stars on GitHub - 1 maintainer
sincell 1.40.0
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data5 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 maintainer
CFAssay 1.42.0
Statistical analysis for the Colony Formation Assay5 versions - Latest release: 3 months ago - 19 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 6 dependent packages - 43.2 thousand downloads total - 1 maintainer
CellNOptR 1.54.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...5 versions - Latest release: 3 months ago - 6 dependent packages - 43.2 thousand downloads total - 1 maintainer
FISHalyseR 1.42.0
FISHalyseR a package for automated FISH quantification5 versions - Latest release: 3 months ago - 16.3 thousand downloads total - 2 maintainers
idpr 1.18.0
Profiling and Analyzing Intrinsically Disordered Proteins in R5 versions - Latest release: 2 months ago - 8.06 thousand downloads total - 4 stars on GitHub - 1 maintainer
MetaCyto 1.30.0
MetaCyto: A package for meta-analysis of cytometry data5 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 1 maintainer
panelcn.mops 1.30.0
CNV detection tool for targeted NGS panel data5 versions - Latest release: 3 months ago - 1 dependent package - 14.8 thousand downloads total - 1 maintainer
KEGGlincs 1.34.0
Visualize all edges within a KEGG pathway and overlay LINCS data5 versions - Latest release: 3 months ago - 15.2 thousand downloads total - 2 maintainers
cytoMEM 1.12.0
Marker Enrichment Modeling (MEM)5 versions - Latest release: 3 months ago - 6.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
roastgsa 1.6.0
Rotation based gene set analysis4 versions - Latest release: 3 months ago - 3.81 thousand downloads total - 0 stars on GitHub - 1 maintainer
pathwayPCA 1.24.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection5 versions - Latest release: 3 months ago - 1 dependent package - 11.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
seahtrue 1.2.0
Seahtrue revives XF data for structured data analysis2 versions - Latest release: 3 months ago - 1.88 thousand downloads total - 0 stars on GitHub - 1 maintainer
SPIAT 1.10.0
Spatial Image Analysis of Tissues9 versions - Latest release: 3 months ago - 8.05 thousand downloads total - 23 stars on GitHub - 1 maintainer
HPAanalyze 1.26.1
Retrieve and analyze data from the Human Protein Atlas6 versions - Latest release: about 2 months ago - 14.3 thousand downloads total - 36 stars on GitHub - 1 maintainer
CancerInSilico 2.24.0 removed
An R interface for computational modeling of tumor progression3 versions - Latest release: about 1 year ago - 9.16 thousand downloads total - 2 maintainers
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: over 1 year ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Related Keywords
Software
67
ImmunoOncology
30
GeneExpression
25
Clustering
21
Sequencing
18
CellBasedAssays
18
SingleCell
17
Proteomics
16
DifferentialExpression
16
RNASeq
16
Visualization
15
BiomedicalInformatics
15
SystemsBiology
14
Regression
14
Genetics
14
Transcriptomics
13
FunctionalGenomics
12
FlowCytometry
12
TimeCourse
12
Transcription
11
MultipleComparison
10
QualityControl
10
DataImport
10
GeneSetEnrichment
9
Normalization
8
Network
8
Pathways
8
Preprocessing
7
Classification
7
StatisticalMethod
7
Epigenetics
7
Bayesian
7
Survival
6
GraphAndNetwork
6
DataRepresentation
6
GeneRegulation
5
Microarray
5
Spatial
5
Metabolomics
5
BatchEffect
5
ATACSeq
4
CopyNumberVariation
4
r
4
DifferentialMethylation
4
AlternativeSplicing
4
ChIPSeq
4
DifferentialSplicing
4
GeneTarget
3
Bioinformatics
3
ProprietaryPlatforms
3
DNASeq
3
NetworkInference
3
Cheminformatics
3
GenomicVariation
3
FeatureExtraction
3
ExperimentalDesign
3
DNAMethylation
3
FunctionalPrediction
2
KEGG
2
ReportWriting
2
ExonArray
2
GeneSignaling
2
bioconductor-package
2
bayesian
2
MicroRNAArray
2
MicrotitrePlateAssay
2
MethylSeq
2
HistoneModification
2
OneChannel
2
GO
2
Coverage
2
bioconductor
2
Cancer
2
GUI
2
TwoChannel
2
mRNAMicroarray
2
MathematicalBiology
1
intercellular
1
StemCell
1
StructuralVariation
1
Annotation
1
TissueMicroarray
1
DNaseSeq
1
RIPSeq
1
DifferentialPeakCalling
1
PeakDetection
1
SNP
1
PrincipalComponent
1
Lipidomics
1
GenomeWideAssociation
1
GenePrediction
1
DimensionReduction
1
ThirdPartyClient
1
VariantDetection
1
StructuralPrediction
1
single-cell
1
scrna-seq
1
rcpparmadillo
1
rcpp
1
gene-expression
1