Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "CellBiology" keyword
CyTOFpower 1.8.0
Power analysis for CyTOF experiments3 versions - Latest release: 6 months ago - 2.32 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 32.2 thousand downloads total - 2 maintainers
CRImage 1.50.0
CRImage a package to classify cells and calculate tumour cellularity3 versions - Latest release: 6 months ago - 32.2 thousand downloads total - 2 maintainers
midasHLA 1.10.0
R package for immunogenomics data handling and association analysis3 versions - Latest release: 6 months ago - 5.76 thousand downloads total - 1 maintainer
uSORT 1.28.0
uSORT: A self-refining ordering pipeline for gene selection3 versions - Latest release: 6 months ago - 9.91 thousand downloads total - 1 maintainer
CNORdt 1.44.0
Add-on to CellNOptR: Discretized time treatments3 versions - Latest release: 6 months ago - 21.7 thousand downloads total - 1 maintainer
flowMeans 1.62.0
Non-parametric Flow Cytometry Data Gating3 versions - Latest release: 6 months ago - 2 dependent packages - 45.4 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
3 versions - Latest release: 6 months ago - 3 dependent packages - 51.2 thousand downloads total - 1 maintainer
hpar 1.44.0
Human Protein Atlas in R3 versions - Latest release: 6 months ago - 3 dependent packages - 51.2 thousand downloads total - 1 maintainer
panelcn.mops 1.24.0
CNV detection tool for targeted NGS panel data3 versions - Latest release: 6 months ago - 1 dependent package - 10.5 thousand downloads total - 1 maintainer
CytoDx 1.22.0
Robust prediction of clinical outcomes using cytometry data without cell gating3 versions - Latest release: 6 months ago - 7.94 thousand downloads total - 1 maintainer
frenchFISH 1.14.0
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections3 versions - Latest release: 6 months ago - 3.9 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 6 dependent packages - 37.4 thousand downloads total - 1 maintainer
CellNOptR 1.48.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...3 versions - Latest release: 6 months ago - 6 dependent packages - 37.4 thousand downloads total - 1 maintainer
LiquidAssociation 1.56.0
LiquidAssociation3 versions - Latest release: 6 months ago - 1 dependent package - 27.1 thousand downloads total - 1 maintainer
GRmetrics 1.28.0
Calculate growth-rate inhibition (GR) metrics3 versions - Latest release: 6 months ago - 15.7 thousand downloads total - 1 stars on GitHub - 2 maintainers
CancerInSilico 2.22.0
An R interface for computational modeling of tumor progression3 versions - Latest release: 6 months ago - 8.93 thousand downloads total - 2 maintainers
Top 7.8% on bioconductor.org
3 versions - Latest release: 6 months ago - 3 dependent packages - 36.6 thousand downloads total - 1 maintainer
flowDensity 1.36.1
Sequential Flow Cytometry Data Gating3 versions - Latest release: 6 months ago - 3 dependent packages - 36.6 thousand downloads total - 1 maintainer
debCAM 1.20.0
Deconvolution by Convex Analysis of Mixtures3 versions - Latest release: 6 months ago - 6.38 thousand downloads total - 1 maintainer
ternarynet 1.46.0
Ternary Network Estimation3 versions - Latest release: 6 months ago - 19.4 thousand downloads total - 1 maintainer
fastLiquidAssociation 1.38.0
functions for genome-wide application of Liquid Association3 versions - Latest release: 6 months ago - 15.5 thousand downloads total - 1 maintainer
MetaCyto 1.24.0
MetaCyto: A package for meta-analysis of cytometry data3 versions - Latest release: 6 months ago - 9.82 thousand downloads total - 1 maintainer
sincell 1.34.0
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data3 versions - Latest release: 6 months ago - 15.2 thousand downloads total - 1 maintainer
CNORode 1.44.0
ODE add-on to CellNOptR3 versions - Latest release: 6 months ago - 1 dependent package - 26.9 thousand downloads total - 1 maintainer
CFAssay 1.36.0
Statistical analysis for the Colony Formation Assay3 versions - Latest release: 6 months ago - 15.4 thousand downloads total - 1 maintainer
gCrisprTools 2.8.0
Suite of Functions for Pooled Crispr Screen QC and Analysis3 versions - Latest release: 6 months ago - 11.6 thousand downloads total - 1 maintainer
metaseqR2 1.14.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...3 versions - Latest release: 6 months ago - 5.12 thousand downloads total - 1 maintainer
FISHalyseR 1.36.0
FISHalyseR a package for automated FISH quantification3 versions - Latest release: 6 months ago - 12.5 thousand downloads total - 2 maintainers
dearseq 1.14.0
Differential Expression Analysis for RNA-seq data through a robust variance component test3 versions - Latest release: 6 months ago - 2 dependent packages - 8.25 thousand downloads total - 6 stars on GitHub - 1 maintainer
GenomicOZone 1.16.0
Delineate outstanding genomic zones of differential gene activity3 versions - Latest release: 6 months ago - 5.21 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 32.1 thousand downloads total - 1 maintainer
SamSPECTRAL 1.56.0
Identifies cell population in flow cytometry data3 versions - Latest release: 6 months ago - 2 dependent packages - 32.1 thousand downloads total - 1 maintainer
GateFinder 1.22.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry3 versions - Latest release: 6 months ago - 7.81 thousand downloads total - 1 maintainer
idpr 1.12.0
Profiling and Analyzing Intrinsically Disordered Proteins in R3 versions - Latest release: 6 months ago - 4.08 thousand downloads total - 4 stars on GitHub - 1 maintainer
staRank 1.44.0
Stability Ranking3 versions - Latest release: 6 months ago - 19.6 thousand downloads total - 1 maintainer
CONFESS 1.30.0
Cell OrderiNg by FluorEScence Signal3 versions - Latest release: 6 months ago - 10.9 thousand downloads total - 1 maintainer
KEGGlincs 1.28.0
Visualize all edges within a KEGG pathway and overlay LINCS data3 versions - Latest release: 6 months ago - 10.9 thousand downloads total - 2 maintainers
CNORfeeder 1.42.0
Integration of CellNOptR to add missing links3 versions - Latest release: 6 months ago - 21.5 thousand downloads total - 1 maintainer
airpart 1.10.0
Differential cell-type-specific allelic imbalance3 versions - Latest release: 6 months ago - 3.63 thousand downloads total - 2 stars on GitHub - 1 maintainer
tRanslatome 1.40.0
Comparison between multiple levels of gene expression3 versions - Latest release: 6 months ago - 20 thousand downloads total - 2 maintainers
cytoMEM 1.6.0
Marker Enrichment Modeling (MEM)3 versions - Latest release: 6 months ago - 2.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
SiPSiC 1.2.2
Calculate Pathway Scores for Each Cell in scRNA-Seq Data5 versions - Latest release: 3 months ago - 1.28 thousand downloads total - 1 maintainer
diffcyt 1.22.1
Differential discovery in high-dimensional cytometry via high-resolution clustering4 versions - Latest release: about 1 month ago - 5 dependent packages - 26.6 thousand downloads total - 18 stars on GitHub - 1 maintainer
MPRAnalyze 1.22.0
Statistical Analysis of MPRA data3 versions - Latest release: 5 days ago - 6.82 thousand downloads total - 10 stars on GitHub - 1 maintainer
cosmosR 1.12.0
COSMOS (Causal Oriented Search of Multi-Omic Space)3 versions - Latest release: 7 days ago - 3.88 thousand downloads total - 52 stars on GitHub - 1 maintainer
spatialHeatmap 2.10.0
spatialHeatmap8 versions - Latest release: 7 days ago - 5.78 thousand downloads total - 4 stars on GitHub - 1 maintainer
mistyR 1.12.0
Multiview Intercellular SpaTial modeling framework4 versions - Latest release: 7 days ago - 4.1 thousand downloads total - 39 stars on GitHub - 1 maintainer
Top 0.3% on bioconductor.org
4 versions - Latest release: 19 days ago - 322 dependent packages - 5.09 million downloads total - 1 maintainer
limma 3.60.0
Linear Models for Microarray Data4 versions - Latest release: 19 days ago - 322 dependent packages - 5.09 million downloads total - 1 maintainer
Top 0.6% on bioconductor.org
14 versions - Latest release: 19 days ago - 181 dependent packages - 3.02 million downloads total - 4 maintainers
edgeR 4.2.0
Empirical Analysis of Digital Gene Expression Data in R14 versions - Latest release: 19 days ago - 181 dependent packages - 3.02 million downloads total - 4 maintainers
BASiCStan 1.6.0
Stan implementation of BASiCS3 versions - Latest release: 8 days ago - 1.67 thousand downloads total - 0 stars on GitHub - 1 maintainer
netresponse 1.64.0
Functional Network Analysis3 versions - Latest release: 12 days ago - 25.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
scatterHatch 1.10.0
Creates hatched patterns for scatterplots3 versions - Latest release: 12 days ago - 1.96 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 6.0% on bioconductor.org
3 versions - Latest release: 13 days ago - 3 dependent packages - 54.7 thousand downloads total - 1 maintainer
cn.mops 1.50.0
cn.mops - Mixture of Poissons for CNV detection in NGS data3 versions - Latest release: 13 days ago - 3 dependent packages - 54.7 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
3 versions - Latest release: 13 days ago - 3 dependent packages - 128 thousand downloads total - 1 maintainer
FlowSOM 2.12.0
Using self-organizing maps for visualization and interpretation of cytometry data3 versions - Latest release: 13 days ago - 3 dependent packages - 128 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
3 versions - Latest release: 13 days ago - 2 dependent packages - 227 thousand downloads total - 1 maintainer
DiffBind 3.14.0
Differential Binding Analysis of ChIP-Seq Peak Data3 versions - Latest release: 13 days ago - 2 dependent packages - 227 thousand downloads total - 1 maintainer
flowcatchR 1.38.0
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells3 versions - Latest release: 20 days ago - 15.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
3 versions - Latest release: 21 days ago - 4 dependent packages - 132 thousand downloads total - 67 stars on GitHub - 1 maintainer
destiny 3.18.0
Creates diffusion maps3 versions - Latest release: 21 days ago - 4 dependent packages - 132 thousand downloads total - 67 stars on GitHub - 1 maintainer
SPIAT 1.6.0
Spatial Image Analysis of Tissues5 versions - Latest release: 20 days ago - 2.95 thousand downloads total - 16 stars on GitHub - 1 maintainer
CCPlotR 1.0.0
Plots For Visualising Cell-Cell Interactions1 version - Latest release: 7 months ago - 738 downloads total - 22 stars on GitHub - 1 maintainer
censcyt 1.10.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry2 versions - Latest release: 6 months ago - 3.07 thousand downloads total - 0 stars on GitHub - 1 maintainer
roastgsa 1.0.0
Rotation based gene set analysis1 version - Latest release: 7 months ago - 569 downloads total - 0 stars on GitHub - 1 maintainer
CytoGLMM 1.10.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments2 versions - Latest release: 6 months ago - 1 dependent package - 3.66 thousand downloads total - 2 stars on GitHub - 1 maintainer
HPAanalyze 1.20.0
Retrieve and analyze data from the Human Protein Atlas2 versions - Latest release: 6 months ago - 8.63 thousand downloads total - 27 stars on GitHub - 1 maintainer
pathwayPCA 1.18.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection2 versions - Latest release: 6 months ago - 1 dependent package - 7.17 thousand downloads total - 11 stars on GitHub - 1 maintainer
BASiCS 2.14.0
Bayesian Analysis of Single-Cell Sequencing data2 versions - Latest release: 6 months ago - 2 dependent packages - 16.7 thousand downloads total - 83 stars on GitHub - 1 maintainer
OVESEG 1.18.0
OVESEG-test to detect tissue/cell-specific markers2 versions - Latest release: 6 months ago - 4.89 thousand downloads total - 1 stars on GitHub - 1 maintainer
cellmigRation 1.10.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics2 versions - Latest release: 7 months ago - 2.69 thousand downloads total - 0 stars on GitHub - 1 maintainer
LineagePulse 1.21.0
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: 6 months ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Related Keywords
Software
64
ImmunoOncology
30
GeneExpression
23
Clustering
21
SingleCell
17
Sequencing
17
CellBasedAssays
17
DifferentialExpression
15
RNASeq
15
Proteomics
15
Regression
14
BiomedicalInformatics
14
SystemsBiology
14
Visualization
13
Genetics
13
TimeCourse
12
FlowCytometry
12
Transcriptomics
11
FunctionalGenomics
11
Transcription
10
GeneSetEnrichment
9
MultipleComparison
9
QualityControl
9
DataImport
9
Normalization
8
Network
8
Pathways
8
StatisticalMethod
7
Classification
7
Bayesian
7
Preprocessing
6
GraphAndNetwork
6
Epigenetics
6
DataRepresentation
5
Microarray
5
Survival
5
Metabolomics
4
GeneRegulation
4
CopyNumberVariation
4
Spatial
4
DifferentialSplicing
4
r
4
ChIPSeq
4
BatchEffect
4
AlternativeSplicing
4
ATACSeq
4
DifferentialMethylation
3
ProprietaryPlatforms
3
FeatureExtraction
3
NetworkInference
3
GenomicVariation
3
DNASeq
3
Bioinformatics
3
GeneSignaling
2
GeneTarget
2
GUI
2
bioconductor
2
bayesian
2
bioconductor-package
2
Coverage
2
KEGG
2
Cheminformatics
2
ExonArray
2
MicroRNAArray
2
ExperimentalDesign
2
OneChannel
2
TwoChannel
2
ReportWriting
2
mRNAMicroarray
2
Cancer
2
DNAMethylation
2
single-cell-rna-seq
1
HapMap
1
Homo_sapiens
1
DNaseSeq
1
DifferentialPeakCalling
1
HistoneModification
1
MethylSeq
1
PeakDetection
1
RIPSeq
1
SAGE
1
trajectory-analysis
1
shiny
1
r-package
1
cell-tracking
1
single-cell
1
scrna-seq
1
rcpparmadillo
1
rcpp
1
gene-expression
1
SNP
1
PrincipalComponent
1
Lipidomics
1
GenomeWideAssociation
1
GenePrediction
1
DimensionReduction
1
dimensionality-reduction
1
diffusion-maps
1
tracking
1
particles
1