bioconductor.org "CellBiology" keyword
Top 0.6% on bioconductor.org
30 versions - Latest release: 28 days ago - 181 dependent packages - 4.8 million downloads total - 4 maintainers
edgeR 4.10.5
Empirical Analysis of Digital Gene Expression Data in R30 versions - Latest release: 28 days ago - 181 dependent packages - 4.8 million downloads total - 4 maintainers
CCPlotR 1.10.0
Plots For Visualising Cell-Cell Interactions6 versions - Latest release: 5 months ago - 11.3 thousand downloads total - 47 stars on GitHub - 1 maintainer
SuperCellCyto 1.2.0
SuperCell For Cytometry Data2 versions - Latest release: 4 months ago - 5.26 thousand downloads total - 13 stars on GitHub - 1 maintainer
blase 1.2.1
Bulk Linking Analysis for Single-cell Experiments3 versions - Latest release: about 1 month ago - 5.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
SpaNorm 1.6.0
Spatially-aware normalisation for spatial transcriptomics data4 versions - Latest release: 5 months ago - 13.2 thousand downloads total - 20 stars on GitHub - 1 maintainer
midasHLA 1.20.0
R package for immunogenomics data handling and association analysis7 versions - Latest release: 5 months ago - 13.9 thousand downloads total - 1 maintainer
BASiCStan 1.14.1
Stan implementation of BASiCS8 versions - Latest release: 2 months ago - 11.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 0.3% on bioconductor.org
22 versions - Latest release: about 2 months ago - 322 dependent packages - 8.07 million downloads total - 1 maintainer
limma 3.68.5
Linear Models for Microarray and Omics Data22 versions - Latest release: about 2 months ago - 322 dependent packages - 8.07 million downloads total - 1 maintainer
seahtrue 1.6.0
Seahtrue revives XF data for structured data analysis4 versions - Latest release: 5 months ago - 10.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
GRmetrics 1.38.0
Calculate growth-rate inhibition (GR) metrics7 versions - Latest release: 4 months ago - 29.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
Top 8.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 6 dependent packages - 57.3 thousand downloads total - 1 maintainer
CellNOptR 1.58.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...7 versions - Latest release: 5 months ago - 6 dependent packages - 57.3 thousand downloads total - 1 maintainer
frenchFISH 1.24.0
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections7 versions - Latest release: 5 months ago - 12.9 thousand downloads total - 1 maintainer
mistyR 1.20.0
Multiview Intercellular SpaTial modeling framework8 versions - Latest release: 4 months ago - 19 thousand downloads total - 74 stars on GitHub - 1 maintainer
HPAanalyze 1.30.0
Retrieve and analyze data from the Human Protein Atlas8 versions - Latest release: 5 months ago - 25 thousand downloads total - 39 stars on GitHub - 1 maintainer
diffcyt 1.32.1
Differential discovery in high-dimensional cytometry via high-resolution clustering10 versions - Latest release: about 2 months ago - 5 dependent packages - 61.2 thousand downloads total - 25 stars on GitHub - 1 maintainer
roastgsa 1.10.0
Rotation based gene set analysis6 versions - Latest release: 5 months ago - 11.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
TENET 1.4.0
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...4 versions - Latest release: 5 months ago - 6.98 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
7 versions - Latest release: 5 months ago - 3 dependent packages - 213 thousand downloads total - 1 maintainer
FlowSOM 2.20.0
Using self-organizing maps for visualization and interpretation of cytometry data7 versions - Latest release: 5 months ago - 3 dependent packages - 213 thousand downloads total - 1 maintainer
GenomicOZone 1.26.0
Delineate outstanding genomic zones of differential gene activity7 versions - Latest release: 5 months ago - 18.7 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 46.1 thousand downloads total - 2 maintainers
CRImage 1.60.0
CRImage a package to classify cells and calculate tumour cellularity7 versions - Latest release: 5 months ago - 46.1 thousand downloads total - 2 maintainers
OVESEG 1.28.0
OVESEG-test to detect tissue/cell-specific markers7 versions - Latest release: 5 months ago - 16.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
CONFESS 1.40.0
Cell OrderiNg by FluorEScence Signal7 versions - Latest release: 5 months ago - 1 maintainer
LiquidAssociation 1.66.0
LiquidAssociation7 versions - Latest release: 5 months ago - 1 dependent package - 40.7 thousand downloads total - 1 maintainer
SiPSiC 1.12.0
Calculate Pathway Scores for Each Cell in scRNA-Seq Data11 versions - Latest release: 5 months ago - 10.1 thousand downloads total - 1 maintainer
gCrisprTools 2.18.0
Suite of Functions for Pooled Crispr Screen QC and Analysis7 versions - Latest release: 5 months ago - 27.4 thousand downloads total - 1 maintainer
dearseq 1.24.0
Differential Expression Analysis for RNA-seq data through a robust variance component test7 versions - Latest release: 5 months ago - 2 dependent packages - 26.7 thousand downloads total - 6 stars on GitHub - 1 maintainer
flowcatchR 1.46.0
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells7 versions - Latest release: 5 months ago - 31 thousand downloads total - 4 stars on GitHub - 1 maintainer
MetaCyto 1.34.0
MetaCyto: A package for meta-analysis of cytometry data7 versions - Latest release: 5 months ago - 22.6 thousand downloads total - 1 maintainer
netresponse 1.72.0
Functional Network Analysis7 versions - Latest release: 5 months ago - 40.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
cellmigRation 1.20.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics7 versions - Latest release: 5 months ago - 13.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
scatterHatch 1.18.0
Creates hatched patterns for scatterplots7 versions - Latest release: 5 months ago - 11.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
MPRAnalyze 1.30.0
Statistical Analysis of MPRA data7 versions - Latest release: 4 months ago - 18.6 thousand downloads total - 13 stars on GitHub - 1 maintainer
BASiCS 2.24.0
Bayesian Analysis of Single-Cell Sequencing data7 versions - Latest release: 5 months ago - 2 dependent packages - 42.4 thousand downloads total - 88 stars on GitHub - 1 maintainer
airpart 1.20.0
Differential cell-type-specific allelic imbalance7 versions - Latest release: 4 months ago - 17.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
censcyt 1.20.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry7 versions - Latest release: 5 months ago - 14.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 4 dependent packages - 224 thousand downloads total - 113 stars on GitHub - 1 maintainer
destiny 3.26.0
Creates diffusion maps7 versions - Latest release: 5 months ago - 4 dependent packages - 224 thousand downloads total - 113 stars on GitHub - 1 maintainer
CNORdt 1.54.0
Add-on to CellNOptR: Discretized time treatments7 versions - Latest release: 4 months ago - 37.8 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
7 versions - Latest release: 5 months ago - 3 dependent packages - 70.2 thousand downloads total - 1 maintainer
flowDensity 1.46.0
Sequential Flow Cytometry Data Gating7 versions - Latest release: 5 months ago - 3 dependent packages - 70.2 thousand downloads total - 1 maintainer
igblastr 1.2.23
User-friendly R Wrapper to IgBLAST10 versions - Latest release: 13 days ago - 17.1 thousand downloads total - 1 maintainer
cytoMEM 1.16.0
Marker Enrichment Modeling (MEM)7 versions - Latest release: 3 months ago - 17.5 thousand downloads total - 5 stars on GitHub - 1 maintainer
ISAnalytics 1.22.0
Analyze gene therapy vector insertion sites data identified from genomics next generation sequenc...9 versions - Latest release: 5 months ago - 22.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
tRanslatome 1.50.0
Comparison between multiple levels of gene expression7 versions - Latest release: 5 months ago - 41.4 thousand downloads total - 2 maintainers
cosmosR 1.20.0
COSMOS (Causal Oriented Search of Multi-Omic Space)8 versions - Latest release: 4 months ago - 20.9 thousand downloads total - 68 stars on GitHub - 1 maintainer
fastLiquidAssociation 1.48.0
functions for genome-wide application of Liquid Association7 versions - Latest release: 4 months ago - 33.1 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
8 versions - Latest release: about 2 months ago - 2 dependent packages - 334 thousand downloads total - 1 maintainer
DiffBind 3.22.2
Differential Binding Analysis of ChIP-Seq Peak Data8 versions - Latest release: about 2 months ago - 2 dependent packages - 334 thousand downloads total - 1 maintainer
sincell 1.44.0
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data7 versions - Latest release: 5 months ago - 35 thousand downloads total - 1 maintainer
cellmig 1.2.0
Uncertainty-aware quantitative analysis of high-throughput live cell migration data3 versions - Latest release: 5 months ago - 8.75 thousand downloads total - 2 stars on GitHub - 1 maintainer
debCAM 1.30.0
Deconvolution by Convex Analysis of Mixtures7 versions - Latest release: 5 months ago - 19.1 thousand downloads total - 1 maintainer
metaseqR2 1.24.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...9 versions - Latest release: 5 months ago - 25.8 thousand downloads total - 1 maintainer
GateFinder 1.32.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry7 versions - Latest release: 5 months ago - 23.9 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
7 versions - Latest release: 4 months ago - 2 dependent packages - 51 thousand downloads total - 1 maintainer
SamSPECTRAL 1.66.0
Identifies cell population in flow cytometry data7 versions - Latest release: 4 months ago - 2 dependent packages - 51 thousand downloads total - 1 maintainer
CyTOFpower 1.18.1
Power analysis for CyTOF experiments9 versions - Latest release: 4 months ago - 14.2 thousand downloads total - 1 maintainer
KEGGlincs 1.38.0
Visualize all edges within a KEGG pathway and overlay LINCS data7 versions - Latest release: 4 months ago - 29.1 thousand downloads total - 2 maintainers
CNORode 1.54.0
ODE add-on to CellNOptR7 versions - Latest release: 5 months ago - 1 dependent package - 43.4 thousand downloads total - 1 maintainer
flowMeans 1.72.0
Non-parametric Flow Cytometry Data Gating7 versions - Latest release: 4 months ago - 2 dependent packages - 72 thousand downloads total - 1 maintainer
idpr 1.22.0
Profiling and Analyzing Intrinsically Disordered Proteins in R7 versions - Latest release: 5 months ago - 20.2 thousand downloads total - 4 stars on GitHub - 1 maintainer
CytoDx 1.32.0
Robust prediction of clinical outcomes using cytometry data without cell gating7 versions - Latest release: 5 months ago - 22.5 thousand downloads total - 1 maintainer
CFAssay 1.46.0
Statistical analysis for the Colony Formation Assay7 versions - Latest release: 5 months ago - 28.2 thousand downloads total - 1 maintainer
ternarynet 1.56.0
Ternary Network Estimation7 versions - Latest release: 4 months ago - 34.6 thousand downloads total - 1 maintainer
SPIAT 1.14.0
Spatial Image Analysis of Tissues12 versions - Latest release: 5 months ago - 21.6 thousand downloads total - 30 stars on GitHub - 1 maintainer
pathwayPCA 1.28.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection7 versions - Latest release: 4 months ago - 1 dependent package - 24.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
panelcn.mops 1.34.0
CNV detection tool for targeted NGS panel data7 versions - Latest release: 5 months ago - 1 dependent package - 29.6 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
7 versions - Latest release: 4 months ago - 3 dependent packages - 100 thousand downloads total - 1 maintainer
hpar 1.54.0
Human Protein Atlas in R7 versions - Latest release: 4 months ago - 3 dependent packages - 100 thousand downloads total - 1 maintainer
Top 6.0% on bioconductor.org
7 versions - Latest release: 4 months ago - 3 dependent packages - 81 thousand downloads total - 1 maintainer
cn.mops 1.58.0
cn.mops - Mixture of Poissons for CNV detection in NGS data7 versions - Latest release: 4 months ago - 3 dependent packages - 81 thousand downloads total - 1 maintainer
CNORfeeder 1.52.0
Integration of CellNOptR to add missing links7 versions - Latest release: 5 months ago - 39.5 thousand downloads total - 1 maintainer
uSORT 1.38.0
uSORT: A self-refining ordering pipeline for gene selection7 versions - Latest release: 5 months ago - 26.4 thousand downloads total - 1 maintainer
FISHalyseR 1.46.0
FISHalyseR a package for automated FISH quantification7 versions - Latest release: 5 months ago - 24.8 thousand downloads total - 2 maintainers
spatialHeatmap 2.18.2
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions18 versions - Latest release: 4 months ago - 19.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
CytoGLMM 1.20.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments8 versions - Latest release: 5 months ago - 1 dependent package - 14.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
staRank 1.50.0 removed
Stability Ranking5 versions - Latest release: over 1 year ago - 22.1 thousand downloads total - 1 maintainer
CancerInSilico 2.24.0 removed
An R interface for computational modeling of tumor progression3 versions - Latest release: over 2 years ago - 9.16 thousand downloads total - 2 maintainers
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: almost 3 years ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Related Keywords
Software
72
ImmunoOncology
31
GeneExpression
26
Clustering
22
SingleCell
21
Sequencing
20
CellBasedAssays
19
RNASeq
17
DifferentialExpression
16
Proteomics
16
BiomedicalInformatics
16
Visualization
15
Regression
15
SystemsBiology
14
Transcriptomics
14
Genetics
14
TimeCourse
13
FlowCytometry
13
FunctionalGenomics
13
Transcription
12
DataImport
11
MultipleComparison
10
QualityControl
10
GeneSetEnrichment
9
Normalization
8
Pathways
8
Network
8
Bayesian
8
Epigenetics
7
StatisticalMethod
7
Preprocessing
7
Classification
7
Survival
6
DataRepresentation
6
BatchEffect
6
GraphAndNetwork
6
Metabolomics
5
r
5
Spatial
5
GeneRegulation
5
Microarray
5
ExperimentalDesign
4
CopyNumberVariation
4
DifferentialSplicing
4
DifferentialMethylation
4
ChIPSeq
4
AlternativeSplicing
4
ATACSeq
4
DNASeq
3
Cheminformatics
3
GeneTarget
3
GenomicVariation
3
Bioinformatics
3
FeatureExtraction
3
NetworkInference
3
DNAMethylation
3
ProprietaryPlatforms
3
mRNAMicroarray
2
FunctionalPrediction
2
TwoChannel
2
KEGG
2
ReportWriting
2
MethylSeq
2
GeneSignaling
2
OneChannel
2
HistoneModification
2
MicrotitrePlateAssay
2
ExonArray
2
Cancer
2
MicroRNAArray
2
Coverage
2
bayesian
2
GO
2
GUI
2
bioconductor-package
2
bioconductor
2
gene-expression
1
GenePrediction
1
GenomeWideAssociation
1
Lipidomics
1
PrincipalComponent
1
SNP
1
CRISPR
1
Pharmacogenetics
1
bioinformatics
1
HiddenMarkovModel
1
TissueMicroarray
1
Pharmacogenomics
1
PooledScreens
1
Immunology
1
ExperimentHubSoftware
1
Immunogenetics
1
TranscriptomeVariant
1
WorkflowStep
1
rcpp
1
MethylationArray
1
rcpparmadillo
1
scrna-seq
1
transcriptomics
1
single-cell
1