bioconductor.org "CellBiology" keyword
View the packages on the bioconductor.org package registry that are tagged with the "CellBiology" keyword.
SpaNorm 1.4.0
Spatially-aware normalisation for spatial transcriptomics data3 versions - Latest release: about 1 month ago - 3.68 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 0.6% on bioconductor.org
26 versions - Latest release: 8 days ago - 181 dependent packages - 4.18 million downloads total - 4 maintainers
edgeR 4.8.2
Empirical Analysis of Digital Gene Expression Data in R26 versions - Latest release: 8 days ago - 181 dependent packages - 4.18 million downloads total - 4 maintainers
Top 0.3% on bioconductor.org
16 versions - Latest release: 2 months ago - 322 dependent packages - 6.83 million downloads total - 1 maintainer
limma 3.66.0
Linear Models for Microarray and Omics Data16 versions - Latest release: 2 months ago - 322 dependent packages - 6.83 million downloads total - 1 maintainer
Top 2.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
DiffBind 3.20.0
Differential Binding Analysis of ChIP-Seq Peak Data6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
blase 1.0.0
Bulk Linking Analysis for Single-cell Experiments1 version - Latest release: 2 months ago - 530 downloads total - 0 stars on GitHub - 1 maintainer
cellmig 1.0.0
Uncertainty-aware quantitative analysis of high-throughput live cell migration data2 versions - Latest release: about 1 month ago - 629 downloads total - 1 stars on GitHub - 1 maintainer
CCPlotR 1.8.0
Plots For Visualising Cell-Cell Interactions5 versions - Latest release: about 2 months ago - 6 thousand downloads total - 43 stars on GitHub - 1 maintainer
cosmosR 1.18.0
COSMOS (Causal Oriented Search of Multi-Omic Space)6 versions - Latest release: about 1 month ago - 11 thousand downloads total - 62 stars on GitHub - 1 maintainer
KEGGlincs 1.36.0
Visualize all edges within a KEGG pathway and overlay LINCS data6 versions - Latest release: about 1 month ago - 17.4 thousand downloads total - 2 maintainers
CytoDx 1.30.0
Robust prediction of clinical outcomes using cytometry data without cell gating6 versions - Latest release: about 1 month ago - 14.3 thousand downloads total - 1 maintainer
ternarynet 1.54.0
Ternary Network Estimation6 versions - Latest release: about 1 month ago - 25.1 thousand downloads total - 1 maintainer
CFAssay 1.44.0
Statistical analysis for the Colony Formation Assay6 versions - Latest release: about 1 month ago - 20.7 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 41.2 thousand downloads total - 1 maintainer
SamSPECTRAL 1.64.0
Identifies cell population in flow cytometry data6 versions - Latest release: about 1 month ago - 2 dependent packages - 41.2 thousand downloads total - 1 maintainer
mistyR 1.18.0
Multiview Intercellular SpaTial modeling framework7 versions - Latest release: about 1 month ago - 11.8 thousand downloads total - 44 stars on GitHub - 1 maintainer
spatialHeatmap 2.15.1
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions15 versions - Latest release: about 1 month ago - 13.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
OVESEG 1.26.0
OVESEG-test to detect tissue/cell-specific markers6 versions - Latest release: about 1 month ago - 10.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
MetaCyto 1.32.0
MetaCyto: A package for meta-analysis of cytometry data6 versions - Latest release: about 1 month ago - 16.3 thousand downloads total - 1 maintainer
TENET 1.2.0
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...3 versions - Latest release: about 1 month ago - 2.08 thousand downloads total - 1 stars on GitHub - 1 maintainer
seahtrue 1.4.0
Seahtrue revives XF data for structured data analysis3 versions - Latest release: about 1 month ago - 3.34 thousand downloads total - 0 stars on GitHub - 1 maintainer
diffcyt 1.30.0
Differential discovery in high-dimensional cytometry via high-resolution clustering8 versions - Latest release: about 1 month ago - 5 dependent packages - 50.1 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 6.0% on bioconductor.org
6 versions - Latest release: about 1 month ago - 3 dependent packages - 67.8 thousand downloads total - 1 maintainer
cn.mops 1.56.0
cn.mops - Mixture of Poissons for CNV detection in NGS data6 versions - Latest release: about 1 month ago - 3 dependent packages - 67.8 thousand downloads total - 1 maintainer
sincell 1.42.0
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data6 versions - Latest release: about 1 month ago - 22.6 thousand downloads total - 1 maintainer
panelcn.mops 1.32.0
CNV detection tool for targeted NGS panel data6 versions - Latest release: about 1 month ago - 1 dependent package - 18.7 thousand downloads total - 1 maintainer
cytoMEM 1.14.0
Marker Enrichment Modeling (MEM)6 versions - Latest release: about 1 month ago - 8.33 thousand downloads total - 0 stars on GitHub - 1 maintainer
gCrisprTools 2.16.0
Suite of Functions for Pooled Crispr Screen QC and Analysis6 versions - Latest release: about 1 month ago - 18.4 thousand downloads total - 1 maintainer
CNORode 1.52.0
ODE add-on to CellNOptR6 versions - Latest release: about 1 month ago - 1 dependent package - 33.9 thousand downloads total - 1 maintainer
tRanslatome 1.48.0
Comparison between multiple levels of gene expression6 versions - Latest release: about 1 month ago - 27.8 thousand downloads total - 2 maintainers
flowMeans 1.70.0
Non-parametric Flow Cytometry Data Gating6 versions - Latest release: about 1 month ago - 2 dependent packages - 57.5 thousand downloads total - 1 maintainer
flowcatchR 1.44.0
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells6 versions - Latest release: about 1 month ago - 22.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
GateFinder 1.30.0
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry6 versions - Latest release: about 1 month ago - 13.8 thousand downloads total - 1 maintainer
GenomicOZone 1.24.0
Delineate outstanding genomic zones of differential gene activity6 versions - Latest release: about 1 month ago - 10.9 thousand downloads total - 1 maintainer
fastLiquidAssociation 1.46.0
functions for genome-wide application of Liquid Association6 versions - Latest release: about 2 months ago - 21.9 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 3 dependent packages - 191 thousand downloads total - 1 maintainer
FlowSOM 2.18.0
Using self-organizing maps for visualization and interpretation of cytometry data6 versions - Latest release: about 1 month ago - 3 dependent packages - 191 thousand downloads total - 1 maintainer
MPRAnalyze 1.28.0
Statistical Analysis of MPRA data6 versions - Latest release: about 1 month ago - 12.8 thousand downloads total - 11 stars on GitHub - 1 maintainer
scatterHatch 1.16.0
Creates hatched patterns for scatterplots6 versions - Latest release: about 1 month ago - 6.65 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: about 1 month ago - 6 dependent packages - 48.5 thousand downloads total - 1 maintainer
CellNOptR 1.56.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...6 versions - Latest release: about 1 month ago - 6 dependent packages - 48.5 thousand downloads total - 1 maintainer
pathwayPCA 1.26.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection6 versions - Latest release: about 1 month ago - 1 dependent package - 14.4 thousand downloads total - 11 stars on GitHub - 1 maintainer
idpr 1.20.0
Profiling and Analyzing Intrinsically Disordered Proteins in R6 versions - Latest release: about 1 month ago - 9.84 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 6.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 3 dependent packages - 65.3 thousand downloads total - 1 maintainer
hpar 1.52.0
Human Protein Atlas in R6 versions - Latest release: about 1 month ago - 3 dependent packages - 65.3 thousand downloads total - 1 maintainer
roastgsa 1.8.0
Rotation based gene set analysis5 versions - Latest release: about 1 month ago - 5.24 thousand downloads total - 0 stars on GitHub - 1 maintainer
dearseq 1.22.0
Differential Expression Analysis for RNA-seq data through a robust variance component test6 versions - Latest release: about 1 month ago - 2 dependent packages - 18.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
netresponse 1.70.0
Functional Network Analysis6 versions - Latest release: about 1 month ago - 32.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
metaseqR2 1.22.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...6 versions - Latest release: about 1 month ago - 11.5 thousand downloads total - 1 maintainer
CNORfeeder 1.50.0
Integration of CellNOptR to add missing links6 versions - Latest release: about 1 month ago - 28.5 thousand downloads total - 1 maintainer
SPIAT 1.12.0
Spatial Image Analysis of Tissues10 versions - Latest release: about 2 months ago - 10.4 thousand downloads total - 24 stars on GitHub - 1 maintainer
CONFESS 1.38.0
Cell OrderiNg by FluorEScence Signal6 versions - Latest release: about 1 month ago - 17.6 thousand downloads total - 1 maintainer
LiquidAssociation 1.64.0
LiquidAssociation6 versions - Latest release: about 1 month ago - 1 dependent package - 33.9 thousand downloads total - 1 maintainer
CytoGLMM 1.18.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments7 versions - Latest release: about 2 months ago - 1 dependent package - 9.12 thousand downloads total - 2 stars on GitHub - 1 maintainer
ISAnalytics 1.20.0
Analyze gene therapy vector insertion sites data identified from genomics next generation sequenc...7 versions - Latest release: about 1 month ago - 9.19 thousand downloads total - 3 stars on GitHub - 1 maintainer
CyTOFpower 1.16.0
Power analysis for CyTOF experiments7 versions - Latest release: about 2 months ago - 5.52 thousand downloads total - 1 maintainer
BASiCStan 1.12.0
Stan implementation of BASiCS6 versions - Latest release: about 1 month ago - 6.88 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
6 versions - Latest release: about 2 months ago - 4 dependent packages - 187 thousand downloads total - 89 stars on GitHub - 1 maintainer
destiny 3.24.0
Creates diffusion maps6 versions - Latest release: about 2 months ago - 4 dependent packages - 187 thousand downloads total - 89 stars on GitHub - 1 maintainer
GRmetrics 1.36.0
Calculate growth-rate inhibition (GR) metrics6 versions - Latest release: about 1 month ago - 22.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
HPAanalyze 1.28.0
Retrieve and analyze data from the Human Protein Atlas7 versions - Latest release: about 2 months ago - 17.1 thousand downloads total - 38 stars on GitHub - 1 maintainer
debCAM 1.27.0
Deconvolution by Convex Analysis of Mixtures6 versions - Latest release: about 2 months ago - 13.6 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: about 2 months ago - 40.6 thousand downloads total - 2 maintainers
CRImage 1.58.0
CRImage a package to classify cells and calculate tumour cellularity6 versions - Latest release: about 2 months ago - 40.6 thousand downloads total - 2 maintainers
airpart 1.18.0
Differential cell-type-specific allelic imbalance6 versions - Latest release: about 2 months ago - 10.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
BASiCS 2.22.0
Bayesian Analysis of Single-Cell Sequencing data6 versions - Latest release: about 2 months ago - 2 dependent packages - 31.5 thousand downloads total - 84 stars on GitHub - 1 maintainer
uSORT 1.36.0
uSORT: A self-refining ordering pipeline for gene selection6 versions - Latest release: about 2 months ago - 15.9 thousand downloads total - 1 maintainer
frenchFISH 1.22.0
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections6 versions - Latest release: about 2 months ago - 8.38 thousand downloads total - 1 maintainer
FISHalyseR 1.44.0
FISHalyseR a package for automated FISH quantification6 versions - Latest release: about 2 months ago - 17.9 thousand downloads total - 2 maintainers
SiPSiC 1.10.0
Calculate Pathway Scores for Each Cell in scRNA-Seq Data10 versions - Latest release: about 2 months ago - 5.6 thousand downloads total - 1 maintainer
cellmigRation 1.18.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics6 versions - Latest release: about 2 months ago - 7.87 thousand downloads total - 0 stars on GitHub - 1 maintainer
midasHLA 1.18.0
R package for immunogenomics data handling and association analysis6 versions - Latest release: about 2 months ago - 10.9 thousand downloads total - 1 maintainer
SuperCellCyto 1.0.0
SuperCell For Cytometry Data1 version - Latest release: 2 months ago - 448 downloads total - 13 stars on GitHub - 1 maintainer
igblastr 1.0.2
User-friendly R Wrapper to IgBLAST2 versions - Latest release: about 1 month ago - 1.17 thousand downloads total - 1 maintainer
staRank 1.50.0 removed
Stability Ranking5 versions - Latest release: 8 months ago - 22.1 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
6 versions - Latest release: about 1 month ago - 3 dependent packages - 49.9 thousand downloads total - 1 maintainer
flowDensity 1.44.0
Sequential Flow Cytometry Data Gating6 versions - Latest release: about 1 month ago - 3 dependent packages - 49.9 thousand downloads total - 1 maintainer
CNORdt 1.52.0
Add-on to CellNOptR: Discretized time treatments6 versions - Latest release: about 1 month ago - 27.3 thousand downloads total - 1 maintainer
censcyt 1.18.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry6 versions - Latest release: about 1 month ago - 7.97 thousand downloads total - 0 stars on GitHub - 1 maintainer
CancerInSilico 2.24.0 removed
An R interface for computational modeling of tumor progression3 versions - Latest release: over 1 year ago - 9.16 thousand downloads total - 2 maintainers
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: about 2 years ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Related Keywords
Software
72
ImmunoOncology
31
GeneExpression
26
Clustering
22
SingleCell
21
Sequencing
20
CellBasedAssays
19
RNASeq
17
BiomedicalInformatics
16
Proteomics
16
DifferentialExpression
16
Visualization
15
Regression
15
SystemsBiology
14
Transcriptomics
14
Genetics
14
TimeCourse
13
FunctionalGenomics
13
FlowCytometry
13
Transcription
12
DataImport
11
MultipleComparison
10
QualityControl
10
GeneSetEnrichment
9
Normalization
8
Pathways
8
Bayesian
8
Network
8
Classification
7
StatisticalMethod
7
Epigenetics
7
Preprocessing
7
Survival
6
BatchEffect
6
GraphAndNetwork
6
DataRepresentation
6
Spatial
5
Metabolomics
5
Microarray
5
GeneRegulation
5
r
5
ExperimentalDesign
4
CopyNumberVariation
4
ATACSeq
4
DifferentialMethylation
4
DifferentialSplicing
4
ChIPSeq
4
AlternativeSplicing
4
Bioinformatics
3
NetworkInference
3
DNAMethylation
3
GeneTarget
3
Cheminformatics
3
DNASeq
3
GenomicVariation
3
ProprietaryPlatforms
3
FeatureExtraction
3
FunctionalPrediction
2
Cancer
2
bioconductor
2
bayesian
2
GO
2
KEGG
2
bioconductor-package
2
MicrotitrePlateAssay
2
Coverage
2
ExonArray
2
MicroRNAArray
2
OneChannel
2
TwoChannel
2
mRNAMicroarray
2
HistoneModification
2
MethylSeq
2
GUI
2
ReportWriting
2
GeneSignaling
2
Lipidomics
1
microscopy
1
GenomeWideAssociation
1
GenePrediction
1
PrincipalComponent
1
DimensionReduction
1
StructuralVariation
1
particles
1
tracking
1
WorkflowStep
1
ExperimentHubSoftware
1
Annotation
1
StructuralPrediction
1
SNP
1
MathematicalBiology
1
StemCell
1
FlowCytData
1
DensityGating
1
Immunology
1
Immunogenetics
1
cytometry
1
computational-biology
1
bioinformatics
1
trajectory-analysis
1