bioconductor.org "GO" keyword
cogena 1.46.0
co-expressed gene-set enrichment analysis7 versions - Latest release: 5 months ago - 33.5 thousand downloads total - 13 stars on GitHub - 1 maintainer
fgga 1.20.0
Hierarchical ensemble method based on factor graph8 versions - Latest release: 5 months ago - 14.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
8 versions - Latest release: 5 months ago - 49 dependent packages - 1.55 million downloads total - 1 maintainer
GSEABase 1.74.0
Gene set enrichment data structures and methods8 versions - Latest release: 5 months ago - 49 dependent packages - 1.55 million downloads total - 1 maintainer
signatureSearch 1.26.0
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis7 versions - Latest release: 4 months ago - 26.7 thousand downloads total - 24 stars on GitHub - 1 maintainer
SemDist 1.46.0
Information Accretion-based Function Predictor Evaluation7 versions - Latest release: 5 months ago - 28 thousand downloads total - 1 stars on GitHub - 1 maintainer
NetActivity 1.14.0
Compute gene set scores from a deep learning framework7 versions - Latest release: 5 months ago - 12.4 thousand downloads total - 1 maintainer
funOmics 1.6.0
Aggregating Omics Data into Higher-Level Functional Representations4 versions - Latest release: 4 months ago - 6.97 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 6.5% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 60.5 thousand downloads total - 1 maintainer
goProfiles 1.74.0
goProfiles: an R package for the statistical analysis of functional profiles7 versions - Latest release: 5 months ago - 1 dependent package - 60.5 thousand downloads total - 1 maintainer
mitology 1.4.0
Study of mitochondrial activity from RNA-seq data3 versions - Latest release: 5 months ago - 7.72 thousand downloads total - 2 stars on GitHub - 1 maintainer
UniProt.ws 2.52.1
R Interface to UniProt Web Services9 versions - Latest release: about 1 month ago - 6 dependent packages - 92.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
GOexpress 1.46.0
Visualise microarray and RNAseq data using gene ontology annotations7 versions - Latest release: 5 months ago - 1 dependent package - 41.8 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
7 versions - Latest release: 5 months ago - 4 dependent packages - 246 thousand downloads total - 6 stars on GitHub - 1 maintainer
gage 2.62.0
Generally Applicable Gene-set Enrichment for Pathway Analysis7 versions - Latest release: 5 months ago - 4 dependent packages - 246 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 5 dependent packages - 325 thousand downloads total - 2 stars on GitHub - 1 maintainer
goseq 1.64.0
Gene Ontology analyser for RNA-seq and other length biased data7 versions - Latest release: 5 months ago - 5 dependent packages - 325 thousand downloads total - 2 stars on GitHub - 1 maintainer
broadSeq 1.6.0
broadSeq : for streamlined exploration of RNA-seq data8 versions - Latest release: 5 months ago - 8.61 thousand downloads total - 9 stars on GitHub - 1 maintainer
goSTAG 1.36.0
A tool to use GO Subtrees to Tag and Annotate Genes within a set7 versions - Latest release: 5 months ago - 24.5 thousand downloads total - 1 maintainer
Top 10.0% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 42.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
mgsa 1.60.0
Model-based gene set analysis7 versions - Latest release: 5 months ago - 1 dependent package - 42.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
SVP 1.4.1
Predicting cell states and their variability in single-cell or spatial omics data6 versions - Latest release: about 1 month ago - 7.76 thousand downloads total - 12 stars on GitHub - 1 maintainer
GeneTonic 3.6.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...7 versions - Latest release: 4 months ago - 1 dependent package - 28.8 thousand downloads total - 83 stars on GitHub - 1 maintainer
iSEEpathways 1.10.0
iSEE extension for panels related to pathway analysis6 versions - Latest release: 5 months ago - 11.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
ontoProc 2.6.0
processing of ontologies of anatomy, cell lines, and so on9 versions - Latest release: 5 months ago - 3 dependent packages - 32.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 6.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 58.6 thousand downloads total - 1 maintainer
goTools 1.86.0
Functions for Gene Ontology database7 versions - Latest release: 5 months ago - 58.6 thousand downloads total - 1 maintainer
categoryCompare 1.56.0
Meta-analysis of high-throughput experiments using feature annotations7 versions - Latest release: 4 months ago - 40.1 thousand downloads total - 6 stars on GitHub - 1 maintainer
mosdef 1.8.0
MOSt frequently used and useful Differential Expression Functions6 versions - Latest release: 4 months ago - 16.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
22 versions - Latest release: 5 months ago - 15 dependent packages - 2.74 million downloads total - 1 maintainer
enrichplot 1.32.0
Visualization of Functional Enrichment Result22 versions - Latest release: 5 months ago - 15 dependent packages - 2.74 million downloads total - 1 maintainer
Top 9.8% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 40.2 thousand downloads total - 1 maintainer
FGNet 3.46.0
Functional Gene Networks derived from biological enrichment analyses7 versions - Latest release: 5 months ago - 1 dependent package - 40.2 thousand downloads total - 1 maintainer
InterCellar 2.18.0
InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication i...7 versions - Latest release: 5 months ago - 16.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
enrichViewNet 1.10.0
From functional enrichment results to biological networks8 versions - Latest release: 4 months ago - 10.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
BgeeDB 2.38.1
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities...8 versions - Latest release: 4 months ago - 2 dependent packages - 33.5 thousand downloads total - 16 stars on GitHub - 4 maintainers
simona 1.10.0
Semantic Similarity on Bio-Ontologies9 versions - Latest release: 5 months ago - 30.6 thousand downloads total - 18 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 23 dependent packages - 609 thousand downloads total - 1 maintainer
GOstats 2.78.0
Tools for manipulating GO and microarrays7 versions - Latest release: 5 months ago - 23 dependent packages - 609 thousand downloads total - 1 maintainer
simplifyEnrichment 2.6.0
Simplify Functional Enrichment Results9 versions - Latest release: 5 months ago - 4 dependent packages - 87.4 thousand downloads total - 128 stars on GitHub - 1 maintainer
SurfR 1.8.0
Surface Protein Prediction and Identification11 versions - Latest release: 4 months ago - 8.75 thousand downloads total - 6 stars on GitHub - 1 maintainer
OmaDB 2.28.0
R wrapper for the OMA REST API7 versions - Latest release: 4 months ago - 2 dependent packages - 31.8 thousand downloads total - 2 stars on GitHub - 2 maintainers
BiocSet 1.25.0
Representing Different Biological Sets5 versions - Latest release: about 2 months ago - 4 dependent packages - 45.3 thousand downloads total - 1 maintainer
carnation 1.0.1
Interactive Exploration & Management of RNA-Seq Analyses2 versions - Latest release: about 1 month ago - 5.38 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 2.6% on bioconductor.org
7 versions - Latest release: 5 months ago - 13 dependent packages - 634 thousand downloads total - 1 maintainer
Category 2.78.0
Category Analysis7 versions - Latest release: 5 months ago - 13 dependent packages - 634 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
7 versions - Latest release: 5 months ago - 2 dependent packages - 409 thousand downloads total - 1 maintainer
annaffy 1.84.0
Annotation tools for Affymetrix biological metadata7 versions - Latest release: 5 months ago - 2 dependent packages - 409 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
7 versions - Latest release: 5 months ago - 2 dependent packages - 55.5 thousand downloads total - 1 maintainer
MLP 1.60.0
Mean Log P Analysis7 versions - Latest release: 5 months ago - 2 dependent packages - 55.5 thousand downloads total - 1 maintainer
Top 1.2% on bioconductor.org
20 versions - Latest release: 5 months ago - 59 dependent packages - 2.85 million downloads total - 1 maintainer
clusterProfiler 4.20.0
A Universal Enrichment Tool for Interpreting Omics Data20 versions - Latest release: 5 months ago - 59 dependent packages - 2.85 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
8 versions - Latest release: 5 months ago - 48 dependent packages - 5.08 million downloads total - 1 maintainer
annotate 1.90.0
Annotation for microarrays8 versions - Latest release: 5 months ago - 48 dependent packages - 5.08 million downloads total - 1 maintainer
fenr 1.10.3
Fast functional enrichment for interactive applications18 versions - Latest release: 7 days ago - 16.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
GeDi 1.7.1
Defining and visualizing the distances between different genesets7 versions - Latest release: 5 months ago - 11.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 5.7% on bioconductor.org
8 versions - Latest release: 5 months ago - 3 dependent packages - 104 thousand downloads total - 100 stars on GitHub - 1 maintainer
rGREAT 2.14.0
GREAT Analysis - Functional Enrichment on Genomic Regions8 versions - Latest release: 5 months ago - 3 dependent packages - 104 thousand downloads total - 100 stars on GitHub - 1 maintainer
MetaNeighbor 1.32.0
Single cell replicability analysis7 versions - Latest release: 5 months ago - 27.4 thousand downloads total - 1 maintainer
GOpro 1.38.1
Find the most characteristic gene ontology terms for groups of human genes8 versions - Latest release: 8 days ago - 35.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
canceR 1.46.0
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC10 versions - Latest release: 5 months ago - 36.9 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
8 versions - Latest release: 5 months ago - 26 dependent packages - 634 thousand downloads total - 2 stars on GitHub - 1 maintainer
topGO 2.64.0
Enrichment Analysis for Gene Ontology8 versions - Latest release: 5 months ago - 26 dependent packages - 634 thousand downloads total - 2 stars on GitHub - 1 maintainer
tRanslatome 1.50.0
Comparison between multiple levels of gene expression7 versions - Latest release: 5 months ago - 41.4 thousand downloads total - 2 maintainers
rrvgo 1.24.0
Reduce + Visualize GO9 versions - Latest release: about 2 months ago - 60.4 thousand downloads total - 40 stars on GitHub - 1 maintainer
GOsummaries 2.37.0 removed
Word cloud summaries of GO enrichment analysis2 versions - Latest release: almost 3 years ago - 19.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
famat 1.22.0
Functional analysis of metabolic and transcriptomic data8 versions - Latest release: 4 months ago - 15 thousand downloads total - 1 stars on GitHub - 1 maintainer
GAPGOM 1.16.0 removed
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)1 version - Latest release: almost 3 years ago - 3.72 thousand downloads total - 3 stars on GitHub - 1 maintainer
seqArchRplus 1.10.0 removed
Downstream analyses of promoter sequence architectures and HTML report generation7 versions - Latest release: 7 months ago - 6.15 thousand downloads total - 1 stars on GitHub - 1 maintainer
GWENA 1.22.0
Pipeline for augmented co-expression analysis7 versions - Latest release: 5 months ago - 27.1 thousand downloads total - 18 stars on GitHub - 1 maintainer
KnowSeq 1.25.0
KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline7 versions - Latest release: 5 months ago - 23.2 thousand downloads total - 1 maintainer
DAPAR 1.44.0
Tools for the Differential Analysis of Proteins Abundance with R12 versions - Latest release: 5 months ago - 1 dependent package - 42.7 thousand downloads total - 1 maintainer
CTDquerier 2.20.0
Package for CTDbase data query, visualization and downstream analysis7 versions - Latest release: 4 months ago - 25.4 thousand downloads total - 1 maintainer
seahtrue 1.6.0
Seahtrue revives XF data for structured data analysis4 versions - Latest release: 5 months ago - 10.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
RCAS 1.38.0
RNA Centric Annotation System8 versions - Latest release: 5 months ago - 1 dependent package - 36.7 thousand downloads total - 1 maintainer
Top 2.1% on bioconductor.org
10 versions - Latest release: 3 months ago - 14 dependent packages - 2.38 million downloads total - 1 maintainer
GOSemSim 2.38.3
GO-terms Semantic Similarity Measures10 versions - Latest release: 3 months ago - 14 dependent packages - 2.38 million downloads total - 1 maintainer
FELLA 1.32.0
Interpretation and enrichment for metabolomics data7 versions - Latest release: 4 months ago - 36.3 thousand downloads total - 1 maintainer
hipathia 3.12.0
HiPathia: High-throughput Pathway Analysis7 versions - Latest release: 5 months ago - 34.6 thousand downloads total - 1 maintainer
ViSEAGO 1.26.0
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and seman...7 versions - Latest release: 5 months ago - 32.7 thousand downloads total - 1 maintainer
MSA2dist 1.16.0
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet u...7 versions - Latest release: 5 months ago - 1 dependent package - 19.1 thousand downloads total - 0 stars on gitlab.gwdg.de - 1 maintainer
Top 9.8% on bioconductor.org
8 versions - Latest release: 5 months ago - 1 dependent package - 52.9 thousand downloads total - 1 maintainer
EGSEA 1.40.0
Ensemble of Gene Set Enrichment Analyses8 versions - Latest release: 5 months ago - 1 dependent package - 52.9 thousand downloads total - 1 maintainer
Top 2.3% on bioconductor.org
8 versions - Latest release: 5 months ago - 5 dependent packages - 260 thousand downloads total - 3 maintainers
ReportingTools 2.52.0
Tools for making reports in various formats8 versions - Latest release: 5 months ago - 5 dependent packages - 260 thousand downloads total - 3 maintainers
gep2pep 1.32.0
Creation and Analysis of Pathway Expression Profiles (PEPs)8 versions - Latest release: 28 days ago - 20.2 thousand downloads total - 1 maintainer
GOfuncR 1.31.0
Gene ontology enrichment using FUNC8 versions - Latest release: 4 months ago - 44.9 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 6 dependent packages - 328 thousand downloads total - 1 maintainer
globaltest 5.66.0
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications...7 versions - Latest release: 5 months ago - 6 dependent packages - 328 thousand downloads total - 1 maintainer
NoRCE 1.24.0
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment7 versions - Latest release: 5 months ago - 16.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
geneXtendeR 1.37.0
Optimized Functional Annotation Of ChIP-seq Data7 versions - Latest release: 4 months ago - 26.4 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 56.6 thousand downloads total - 2 maintainers
GDCRNATools 1.32.0
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data i...7 versions - Latest release: 5 months ago - 56.6 thousand downloads total - 2 maintainers
Top 7.2% on bioconductor.org
9 versions - Latest release: 5 months ago - 1 dependent package - 50.4 thousand downloads total - 1 maintainer
Rcpi 1.48.0
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery9 versions - Latest release: 5 months ago - 1 dependent package - 50.4 thousand downloads total - 1 maintainer
GOfan 1.0.0
Sunburst Plot for Enriched Gene Ontology Terms1 version - Latest release: 5 months ago - 3.17 thousand downloads total - 1 stars on GitHub - 1 maintainer
GOaGO 1.0.1
Gene Ontology enrichment analysis of gene pairs2 versions - Latest release: 4 months ago - 3.95 thousand downloads total - 0 stars on GitHub - 1 maintainer
DeeDeeExperiment 1.2.0
DeeDeeExperiment: An S4 Class for managing and exploring omics analysis results2 versions - Latest release: 5 months ago - 6.04 thousand downloads total - 1 stars on GitHub - 1 maintainer
ClusterJudge 1.34.0
Judging Quality of Clustering Methods using Mutual Information7 versions - Latest release: 4 months ago - 20.4 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
10 versions - Latest release: 5 months ago - 3 dependent packages - 92.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
rols 3.7.1
An R interface to the Ontology Lookup Service10 versions - Latest release: 5 months ago - 3 dependent packages - 92.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
goSorensen 1.14.0
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)7 versions - Latest release: 5 months ago - 10.3 thousand downloads total - 1 maintainer
Top 6.5% on bioconductor.org
6 versions - Latest release: 10 months ago - 1 dependent package - 59.3 thousand downloads total - 1 maintainer
interactiveDisplay 1.48.0 removed
Package for enabling powerful shiny web displays of Bioconductor objects6 versions - Latest release: 10 months ago - 1 dependent package - 59.3 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 10 months ago - 3 dependent packages - 1.03 million downloads total - 1 maintainer
interactiveDisplayBase 1.48.0 removed
Base package for enabling powerful shiny web displays of Bioconductor objects6 versions - Latest release: 10 months ago - 3 dependent packages - 1.03 million downloads total - 1 maintainer
PloGO2 1.16.0 removed
Plot Gene Ontology and KEGG pathway Annotation and Abundance3 versions - Latest release: over 2 years ago - 4.86 thousand downloads total - 2 maintainers
Top 9.5% on bioconductor.org
3 versions - Latest release: over 2 years ago - 30.1 thousand downloads total - 1 maintainer
GOSim 1.42.0 removed
Computation of functional similarities between GO terms and gene products; GO enrichment analysis3 versions - Latest release: over 2 years ago - 30.1 thousand downloads total - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: over 2 years ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
FoldGO 1.22.0 removed
Package for Fold-specific GO Terms Recognition3 versions - Latest release: over 2 years ago - 5.83 thousand downloads total - 1 maintainer
BioMM 1.18.0 removed
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using ...2 versions - Latest release: almost 3 years ago - 4.99 thousand downloads total - 1 maintainer
GRridge 1.26.0 removed
Better prediction by use of co-data: Adaptive group-regularized ridge regression2 versions - Latest release: almost 3 years ago - 7.94 thousand downloads total - 1 maintainer
Related Keywords
Software
87
GeneSetEnrichment
45
Pathways
43
GeneExpression
43
Visualization
30
Annotation
27
DifferentialExpression
22
KEGG
22
Microarray
21
Clustering
19
Sequencing
16
RNASeq
15
MultipleComparison
14
Transcriptomics
13
Network
12
ImmunoOncology
10
GraphAndNetwork
10
Transcription
10
Genetics
10
DataImport
9
DataRepresentation
9
Classification
8
NetworkEnrichment
8
Reactome
8
GUI
7
SystemsBiology
7
QualityControl
6
Proteomics
6
ShinyApps
6
FunctionalPrediction
6
r
6
bioconductor
6
ReportWriting
5
Coverage
5
GenomeAnnotation
5
GeneTarget
5
Infrastructure
5
FunctionalGenomics
5
OneChannel
4
Metabolomics
4
bioinformatics
4
SingleCell
4
GenePrediction
3
GeneRegulation
3
BiomedicalInformatics
3
Preprocessing
3
BatchEffect
3
bioconductor-package
3
enrichment-analysis
3
Alignment
2
CellBiology
2
shiny
2
TwoChannel
2
Bioinformatics
2
ComparativeGenomics
2
BiologicalQuestion
2
AnnotationData
2
NetworkInference
2
genomics
2
Cheminformatics
2
StatisticalMethod
2
FeatureExtraction
2
gene-expression
2
gene
2
transcriptomics
2
Spatial
2
Normalization
2
MassSpectrometry
2
GeneSignaling
2
Survival
2
mRNAMicroarray
2
Regression
2
MotifAnnotation
2
mskcc
1
mutations
1
tcltk
1
NaturalLanguageProcessing
1
co-expression
1
network-analysis
1
HistoneModification
1
DifferentialPeakCalling
1
functional-enrichment
1
ChipOnChip
1
pipeline
1
ChIPSeq
1
network
1
cystocape
1
r-package
1
rstats
1
rna-seq-data
1
rna-seq-analysis
1
reproducible-research
1
pathway-analysis
1
gui
1
functional-enrichment-analysis
1
data-visualization
1
data-exploration
1
transcriptome
1
user-friendly
1
iseeu
1