bioconductor.org "Metabolomics" keyword
limpca 1.8.0
An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family ...5 versions - Latest release: 5 months ago - 15.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
bioassayR 1.50.0
Cross-target analysis of small molecule bioactivity7 versions - Latest release: 6 months ago - 48.1 thousand downloads total - 6 stars on GitHub - 1 maintainer
QFeatures 1.22.0
Quantitative features for mass spectrometry data9 versions - Latest release: 6 months ago - 6 dependent packages - 214 thousand downloads total - 30 stars on GitHub - 1 maintainer
MsExperiment 1.14.0
Infrastructure for Mass Spectrometry Experiments8 versions - Latest release: 5 months ago - 2 dependent packages - 95.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
MetaboCoreUtils 1.20.1
Core Utils for Metabolomics Data9 versions - Latest release: 6 months ago - 5 dependent packages - 160 thousand downloads total - 9 stars on GitHub - 1 maintainer
pathwayPCA 1.28.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection7 versions - Latest release: 5 months ago - 1 dependent package - 29.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
rWikiPathways 1.32.0
rWikiPathways - R client library for the WikiPathways API7 versions - Latest release: 6 months ago - 5 dependent packages - 93.6 thousand downloads total - 20 stars on GitHub - 1 maintainer
Top 0.3% on bioconductor.org
22 versions - Latest release: 2 months ago - 322 dependent packages - 8.76 million downloads total - 1 maintainer
limma 3.68.5
Linear Models for Microarray and Omics Data22 versions - Latest release: 2 months ago - 322 dependent packages - 8.76 million downloads total - 1 maintainer
MAIT 1.46.0
Statistical Analysis of Metabolomic Data7 versions - Latest release: 6 months ago - 40.9 thousand downloads total - 1 maintainer
Top 1.5% on bioconductor.org
16 versions - Latest release: 4 months ago - 15 dependent packages - 1.03 million downloads total - 236 stars on GitHub - 1 maintainer
xcms 4.10.1
LC-MS and GC-MS Data Analysis16 versions - Latest release: 4 months ago - 15 dependent packages - 1.03 million downloads total - 236 stars on GitHub - 1 maintainer
IsoCorrectoRGUI 1.28.0
Graphical User Interface for IsoCorrectoR7 versions - Latest release: 6 months ago - 1 dependent package - 20.7 thousand downloads total - 1 maintainer
autonomics 1.20.0
Unified Statistical Modeling of Omics Data10 versions - Latest release: 6 months ago - 25.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
metabomxtr 1.46.0
A package to run mixture models for truncated metabolomics data with normal or lognormal distribu...7 versions - Latest release: 6 months ago - 31.7 thousand downloads total - 1 maintainer
pmp 1.24.0
Peak Matrix Processing and signal batch correction for metabolomics datasets8 versions - Latest release: 6 months ago - 2 dependent packages - 31.6 thousand downloads total - 1 maintainer
SDAMS 1.32.0
Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequen...7 versions - Latest release: 6 months ago - 26.5 thousand downloads total - 1 maintainer
Top 4.8% on bioconductor.org
7 versions - Latest release: 5 months ago - 8 dependent packages - 167 thousand downloads total - 1 maintainer
CAMERA 1.68.0
Collection of annotation related methods for mass spectrometry data7 versions - Latest release: 5 months ago - 8 dependent packages - 167 thousand downloads total - 1 maintainer
Top 8.6% on bioconductor.org
13 versions - Latest release: 4 months ago - 15 dependent packages - 207 thousand downloads total - 48 stars on GitHub - 1 maintainer
Spectra 1.22.2
Spectra Infrastructure for Mass Spectrometry Data13 versions - Latest release: 4 months ago - 15 dependent packages - 207 thousand downloads total - 48 stars on GitHub - 1 maintainer
hmdbQuery 1.31.1
utilities for exploration of human metabolome database7 versions - Latest release: 5 months ago - 25.9 thousand downloads total - 1 maintainer
Top 2.5% on bioconductor.org
7 versions - Latest release: 6 months ago - 23 dependent packages - 1.24 million downloads total - 44 stars on GitHub - 1 maintainer
mzR 2.46.0
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)7 versions - Latest release: 6 months ago - 23 dependent packages - 1.24 million downloads total - 44 stars on GitHub - 1 maintainer
Top 8.5% on bioconductor.org
7 versions - Latest release: 6 months ago - 59.7 thousand downloads total - 1 maintainer
RMassBank 3.22.0
Workflow to process tandem MS files and build MassBank records7 versions - Latest release: 6 months ago - 59.7 thousand downloads total - 1 maintainer
Macarron 1.16.0
Prioritization of potentially bioactive metabolic features from epidemiological and environmental...10 versions - Latest release: 5 months ago - 17.8 thousand downloads total - 1 maintainer
cosmosR 1.20.0
COSMOS (Causal Oriented Search of Multi-Omic Space)8 versions - Latest release: 5 months ago - 23.5 thousand downloads total - 70 stars on GitHub - 1 maintainer
metabCombiner 1.22.0
Method for Combining LC-MS Metabolomics Feature Measurements7 versions - Latest release: 5 months ago - 24 thousand downloads total - 6 stars on GitHub - 1 maintainer
MetNet 1.30.0
Inferring metabolic networks from untargeted high-resolution mass spectrometry data9 versions - Latest release: 6 months ago - 32.4 thousand downloads total - 1 maintainer
calm 1.26.0
Covariate Assisted Large-scale Multiple testing4 versions - Latest release: 3 months ago - 17.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
marr 1.22.0
Maximum rank reproducibility7 versions - Latest release: 6 months ago - 21.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
MetCirc 1.42.0
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data7 versions - Latest release: 5 months ago - 32.4 thousand downloads total - 1 maintainer
Top 2.6% on bioconductor.org
7 versions - Latest release: 6 months ago - 9 dependent packages - 430 thousand downloads total - 1 maintainer
mixOmics 6.36.0
Omics Data Integration Project7 versions - Latest release: 6 months ago - 9 dependent packages - 430 thousand downloads total - 1 maintainer
Top 9.8% on bioconductor.org
8 versions - Latest release: 6 months ago - 1 dependent package - 58.5 thousand downloads total - 1 maintainer
EGSEA 1.40.0
Ensemble of Gene Set Enrichment Analyses8 versions - Latest release: 6 months ago - 1 dependent package - 58.5 thousand downloads total - 1 maintainer
sparsenetgls 1.30.0
Using Gaussian graphical structue learning estimation in generalized least squared regression for...7 versions - Latest release: 6 months ago - 21.7 thousand downloads total - 1 maintainer
phenomis 1.14.0
Postprocessing and univariate analysis of omics data9 versions - Latest release: 5 months ago - 16.9 thousand downloads total - 1 maintainer
sfi 1.0.0
Data analysis for Single File Injections (SFIs) mode LC-MS analysis1 version - Latest release: 6 months ago - 3.69 thousand downloads total - 1 stars on GitHub - 1 maintainer
metabom8 1.0.8
A High-Performance R Package for Metabolomics Modeling and Analysis2 versions - Latest release: 4 months ago - 3.19 thousand downloads total - 4 stars on GitHub - 1 maintainer
ExpoRiskR 1.0.0
Exposure-Aware Multi-Omics Risk Modeling1 version - Latest release: 6 months ago - 2.95 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetaboAnnotatoR 1.0.0
Automated Annotation of All-Ion Fragmentation LC-MS Metabolomic Features1 version - Latest release: 6 months ago - 6.26 thousand downloads total - 15 stars on GitHub - 1 maintainer
ASICS 2.28.0
Automatic Statistical Identification in Complex Spectra9 versions - Latest release: 5 months ago - 39.8 thousand downloads total - 1 maintainer
FELLA 1.32.0
Interpretation and enrichment for metabolomics data7 versions - Latest release: 5 months ago - 1 maintainer
lcmsPlot 1.0.0
Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package1 version - Latest release: 6 months ago - 6.72 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.1% on bioconductor.org
7 versions - Latest release: 5 months ago - 4 dependent packages - 141 thousand downloads total - 1 maintainer
RankProd 3.38.0
Rank Product method for identifying differentially expressed genes with application in meta-analysis7 versions - Latest release: 5 months ago - 4 dependent packages - 141 thousand downloads total - 1 maintainer
Top 6.1% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 83.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
fmcsR 1.54.0
Mismatch Tolerant Maximum Common Substructure Searching7 versions - Latest release: 5 months ago - 1 dependent package - 83.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
MetaProViz 4.0.0
METabolomics pre-PRocessing, functiOnal analysis and VIZualisation1 version - Latest release: 6 months ago - 25 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
7 versions - Latest release: 5 months ago - 9 dependent packages - 174 thousand downloads total - 1 maintainer
ropls 1.44.0
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data7 versions - Latest release: 5 months ago - 9 dependent packages - 174 thousand downloads total - 1 maintainer
msPurity 1.38.0
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabol...8 versions - Latest release: 4 months ago - 31.9 thousand downloads total - 16 stars on GitHub - 1 maintainer
MetMashR 1.6.0
Metabolite Mashing with R5 versions - Latest release: 5 months ago - 12.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
peakPantheR 1.26.0
Peak Picking and Annotation of High Resolution Experiments9 versions - Latest release: 6 months ago - 23 thousand downloads total - 13 stars on GitHub - 1 maintainer
rawDiag 1.8.0
Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful6 versions - Latest release: 6 months ago - 12 thousand downloads total - 37 stars on GitHub - 1 maintainer
timeOmics 1.24.0
Time-Course Multi-Omics data integration7 versions - Latest release: 6 months ago - 1 dependent package - 23.8 thousand downloads total - 21 stars on GitHub - 1 maintainer
MetaboDynamics 2.2.1
Bayesian analysis of longitudinal metabolomics data6 versions - Latest release: about 2 months ago - 11.9 thousand downloads total - 5 stars on GitHub - 1 maintainer
rawrr 1.20.0
Direct Access to Orbitrap Data and Beyond9 versions - Latest release: 6 months ago - 1 dependent package - 29.6 thousand downloads total - 62 stars on GitHub - 1 maintainer
Chromatograms 1.2.0
Infrastructure for Chromatographic Mass Spectrometry Data2 versions - Latest release: 6 months ago - 8.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
BridgeDbR 2.22.0
Code for using BridgeDb identifier mapping framework from within R7 versions - Latest release: 6 months ago - 39.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
qmtools 1.16.0
Quantitative Metabolomics Data Processing Tools7 versions - Latest release: 5 months ago - 18.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
INDEED 2.26.0
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis...7 versions - Latest release: 5 months ago - 18.2 thousand downloads total - 5 stars on GitHub - 2 maintainers
cosmiq 1.46.0
cosmiq - COmbining Single Masses Into Quantities7 versions - Latest release: 5 months ago - 36 thousand downloads total - 1 maintainer
msqrob2 1.20.0
Robust statistical inference for quantitative LC-MS proteomics8 versions - Latest release: 6 months ago - 22 thousand downloads total - 15 stars on GitHub - 1 maintainer
SpectriPy 1.2.1
Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python3 versions - Latest release: 3 months ago - 5.31 thousand downloads total - 13 stars on GitHub - 1 maintainer
iModMix 1.2.0
Integrative Modules for Multi-Omics Data2 versions - Latest release: 5 months ago - 3.88 thousand downloads total - 4 stars on GitHub - 1 maintainer
notameStats 1.2.0
Workflow for non-targeted LC-MS metabolic profiling2 versions - Latest release: 6 months ago - 3.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
notameViz 1.2.0
Workflow for non-targeted LC-MS metabolic profiling3 versions - Latest release: 5 months ago - 4.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
notame 1.2.0
Workflow for non-targeted LC-MS metabolic profiling3 versions - Latest release: 6 months ago - 5.73 thousand downloads total - 6 stars on GitHub - 1 maintainer
batchCorr 1.2.0
Within And Between Batch Correction Of LC-MS Metabolomics Data2 versions - Latest release: 6 months ago - 4.79 thousand downloads total - 0 stars on GitHub - 1 maintainer
CalibraCurve 1.2.0
Calibration curves for targeted proteomics, lipidomics and metabolomics data2 versions - Latest release: 6 months ago - 5.41 thousand downloads total - 5 stars on GitHub - 1 maintainer
DNEA 1.2.0
Differential Network Enrichment Analysis for Biological Data2 versions - Latest release: 6 months ago - 5.86 thousand downloads total - 3 stars on GitHub - 1 maintainer
LOBSTAHS 1.38.0
Lipid and Oxylipin Biomarker Screening through Adduct Hierarchy Sequences8 versions - Latest release: 6 months ago - 24.5 thousand downloads total - 3 maintainers
netboost 2.20.0
Network Analysis Supported by Boosting8 versions - Latest release: 6 months ago - 16.5 thousand downloads total - 1 maintainer
fobitools 1.20.0
Tools for Manipulating the FOBI Ontology7 versions - Latest release: 5 months ago - 14.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
seahtrue 1.6.0
Seahtrue revives XF data for structured data analysis4 versions - Latest release: 6 months ago - 10.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
Aerith 1.0.1
visualization and annotation of isotopic enrichment patterns of peptides and metabolites with sta...2 versions - Latest release: 4 months ago - 7.16 thousand downloads total - 5 stars on GitHub - 1 maintainer
ncGTW 1.26.0
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misali...7 versions - Latest release: 6 months ago - 16.7 thousand downloads total - 1 maintainer
ptairMS 1.20.0
Pre-processing PTR-TOF-MS Data7 versions - Latest release: 6 months ago - 16.1 thousand downloads total - 7 stars on GitHub - 1 maintainer
rgoslin 1.16.0
Lipid Shorthand Name Parsing and Normalization7 versions - Latest release: 6 months ago - 13.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
SIMAT 1.44.0
GC-SIM-MS data processing and alaysis tool7 versions - Latest release: 6 months ago - 27.4 thousand downloads total - 1 maintainer
Top 6.3% on bioconductor.org
7 versions - Latest release: 6 months ago - 8 dependent packages - 543 thousand downloads total - 17 stars on GitHub - 1 maintainer
ChemmineR 3.64.0
Cheminformatics Toolkit for R7 versions - Latest release: 6 months ago - 8 dependent packages - 543 thousand downloads total - 17 stars on GitHub - 1 maintainer
MsQuality 1.12.0
MsQuality - Quality metric calculation from Spectra, MsExperiment and Chromatograms objects10 versions - Latest release: 6 months ago - 14.9 thousand downloads total - 9 stars on GitHub - 1 maintainer
roastgsa 1.10.0
Rotation based gene set analysis6 versions - Latest release: 5 months ago - 11.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
squallms 1.6.0
Speedy quality assurance via lasso labeling for LC-MS data4 versions - Latest release: 6 months ago - 8.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
cliqueMS 1.26.0
Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data8 versions - Latest release: 6 months ago - 20.7 thousand downloads total - 1 maintainer
MsBackendSql 1.12.0
SQL-based Mass Spectrometry Data Backend7 versions - Latest release: 6 months ago - 12.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
RFLOMICS 1.4.2
Interactive web application for Omics-data analysis6 versions - Latest release: 4 months ago - 7.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
MsDataHub 1.12.1
Mass Spectrometry Data on ExperimentHub8 versions - Latest release: 2 months ago - 2 dependent packages - 17.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
hdxmsqc 1.8.0
An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments6 versions - Latest release: 6 months ago - 8.77 thousand downloads total - 1 stars on GitHub - 1 maintainer
AlpsNMR 4.14.0
Automated spectraL Processing System for NMR8 versions - Latest release: 6 months ago - 21.8 thousand downloads total - 17 stars on GitHub - 1 maintainer
MsBackendMetaboLights 1.6.1
Retrieve Mass Spectrometry Data from MetaboLights5 versions - Latest release: 4 months ago - 10.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
7 versions - Latest release: 6 months ago - 11 dependent packages - 459 thousand downloads total - 8 stars on GitHub - 1 maintainer
graphite 1.58.0
GRAPH Interaction from pathway Topological Environment7 versions - Latest release: 6 months ago - 11 dependent packages - 459 thousand downloads total - 8 stars on GitHub - 1 maintainer
combi 1.24.0
Compositional omics model based visual integration7 versions - Latest release: 5 months ago - 17.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
eiR 1.52.0
Accelerated similarity searching of small molecules7 versions - Latest release: 5 months ago - 28.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
10 versions - Latest release: 6 months ago - 19 dependent packages - 393 thousand downloads total - 17 stars on GitHub - 1 maintainer
MsCoreUtils 1.24.0
Core Utils for Mass Spectrometry Data10 versions - Latest release: 6 months ago - 19 dependent packages - 393 thousand downloads total - 17 stars on GitHub - 1 maintainer
biosigner 1.40.0
Signature discovery from omics data8 versions - Latest release: 5 months ago - 2 dependent packages - 30.3 thousand downloads total - 1 maintainer
LimROTS 1.4.0
LimROTS: A Hybrid Method Integrating Empirical Bayes and Reproducibility-Optimized Statistics for...6 versions - Latest release: 6 months ago - 11.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
pairkat 1.18.0
PaIRKAT7 versions - Latest release: 6 months ago - 13.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
MsBackendMgf 1.20.1
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files8 versions - Latest release: 3 months ago - 3 dependent packages - 59.5 thousand downloads total - 5 stars on GitHub - 2 maintainers
metabolomicsWorkbenchR 1.22.0
Metabolomics Workbench in R9 versions - Latest release: 5 months ago - 1 dependent package - 18.8 thousand downloads total - 1 maintainer
Top 9.8% on bioconductor.org
7 versions - Latest release: 6 months ago - 1 dependent package - 39.5 thousand downloads total - 15 stars on GitHub - 1 maintainer
metaMS 1.48.0
MS-based metabolomics annotation pipeline7 versions - Latest release: 6 months ago - 1 dependent package - 39.5 thousand downloads total - 15 stars on GitHub - 1 maintainer
MsBackendRawFileReader 1.18.0
Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files7 versions - Latest release: 5 months ago - 14.1 thousand downloads total - 6 stars on GitHub - 1 maintainer
PepsNMR 1.30.0
Pre-process 1H-NMR FID signals7 versions - Latest release: 5 months ago - 1 dependent package - 26.2 thousand downloads total - 8 stars on GitHub - 1 maintainer
SpectraQL 1.6.0
MassQL support for Spectra5 versions - Latest release: 6 months ago - 7.01 thousand downloads total - 10 stars on GitHub - 1 maintainer
MWASTools 1.36.0
MWASTools: an integrated pipeline to perform metabolome-wide association studies7 versions - Latest release: 6 months ago - 1 dependent package - 27.5 thousand downloads total - 2 maintainers
funOmics 1.6.0
Aggregating Omics Data into Higher-Level Functional Representations4 versions - Latest release: 5 months ago - 6.97 thousand downloads total - 7 stars on GitHub - 1 maintainer
CompoundDb 1.16.0
Creating and Using (Chemical) Compound Annotation Databases9 versions - Latest release: 5 months ago - 3 dependent packages - 39.3 thousand downloads total - 19 stars on GitHub - 1 maintainer
structToolbox 1.24.0
Data processing & analysis tools for Metabolomics and other omics10 versions - Latest release: 5 months ago - 1 dependent package - 20.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
Related Keywords
Software
133
MassSpectrometry
76
Proteomics
60
ImmunoOncology
31
Visualization
29
DataImport
27
Infrastructure
25
Preprocessing
22
DifferentialExpression
19
metabolomics
19
mass-spectrometry
18
QualityControl
18
Regression
18
Network
17
Clustering
17
Pathways
17
Transcriptomics
16
MultipleComparison
15
GeneExpression
15
Cheminformatics
14
GraphAndNetwork
14
Microarray
13
Normalization
13
BiomedicalInformatics
13
Lipidomics
13
Sequencing
12
SystemsBiology
11
KEGG
11
RNASeq
11
BatchEffect
10
proteomics
9
Classification
9
GeneSetEnrichment
9
r
8
Genetics
7
PrincipalComponent
7
DimensionReduction
7
bioconductor
6
StatisticalMethod
6
TimeCourse
6
CellBasedAssays
6
MicrotitrePlateAssay
6
rstats
6
ShinyApps
5
Microbiome
5
bioinformatics
5
Pharmacogenetics
5
Pharmacogenomics
5
FeatureExtraction
5
CellBiology
5
Bayesian
5
Annotation
5
PeakDetection
4
GeneSignaling
4
GO
4
Alignment
4
Transcription
4
Epigenetics
4
ExperimentalDesign
4
Survival
3
ThirdPartyClient
3
rpackage
3
GUI
3
GenePrediction
3
FunctionalPrediction
3
Metagenomics
3
r-package
3
GeneTarget
3
NetworkEnrichment
3
WorkflowStep
3
mRNAMicroarray
3
bioconductor-package
3
TwoChannel
3
OneChannel
3
lc-ms
3
FunctionalGenomics
3
GenomeWideAssociation
3
ExonArray
2
MicroRNAArray
2
DifferentialSplicing
2
AlternativeSplicing
2
ProprietaryPlatforms
2
infrastructure
2
SNP
2
Reactome
2
Coverage
2
metabolomics-data
2
annotation
2
pathways
2
feature-detection
2
Bioinformatics
2
transcriptomics
2
CopyNumberVariation
2
multiplatform
2
dims
2
machine-learning
2
NetworkInference
2
fast
2
ResearchField
2
life-sciences
1