bioconductor.org "PeakDetection" keyword
DEScan2 1.32.0
Differential Enrichment Scan 27 versions - Latest release: 5 months ago - 33.5 thousand downloads total - 1 maintainer
HiCPotts 1.2.1
HiCPotts: Hierarchical Modeling to Identify and Correct Genomic Biases in Hi-C3 versions - Latest release: about 1 month ago - 8.35 thousand downloads total - 0 stars on GitHub - 1 maintainer
BasicSTARRseq 1.40.0
Basic peak calling on STARR-seq data7 versions - Latest release: 6 months ago - 29.9 thousand downloads total - 1 maintainer
peakPantheR 1.26.0
Peak Picking and Annotation of High Resolution Experiments9 versions - Latest release: 6 months ago - 23 thousand downloads total - 13 stars on GitHub - 1 maintainer
NADfinder 1.36.0
Call wide peaks for sequencing data7 versions - Latest release: 6 months ago - 34.1 thousand downloads total - 2 maintainers
consensusSeekeR 1.40.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...7 versions - Latest release: 5 months ago - 2 dependent packages - 32.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
TRESS 1.18.0
Toolbox for mRNA epigenetics sequencing analysis7 versions - Latest release: 5 months ago - 1 dependent package - 17.2 thousand downloads total - 1 maintainer
CAGEfightR 1.32.0
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor7 versions - Latest release: 5 months ago - 1 dependent package - 40.3 thousand downloads total - 10 stars on GitHub - 1 maintainer
ptairMS 1.20.0
Pre-processing PTR-TOF-MS Data7 versions - Latest release: 5 months ago - 16.1 thousand downloads total - 7 stars on GitHub - 1 maintainer
crupR 1.4.0
An R package to predict condition-specific enhancers from ChIP-seq data3 versions - Latest release: 6 months ago - 7.26 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 8.5% on bioconductor.org
9 versions - Latest release: 3 months ago - 2 dependent packages - 348 thousand downloads total - 11 stars on GitHub - 1 maintainer
MassSpecWavelet 1.78.2 💰
Peak Detection for Mass Spectrometry data using wavelet-based algorithms9 versions - Latest release: 3 months ago - 2 dependent packages - 348 thousand downloads total - 11 stars on GitHub - 1 maintainer
normr 1.38.1
Normalization and difference calling in ChIP-seq data8 versions - Latest release: 5 months ago - 31.9 thousand downloads total - 11 stars on GitHub - 1 maintainer
idr2d 1.26.0
Irreproducible Discovery Rate for Genomic Interactions Data8 versions - Latest release: 6 months ago - 18.3 thousand downloads total - 1 maintainer
ChIPanalyser 1.34.0
ChIPanalyser: Predicting Transcription Factor Binding Sites7 versions - Latest release: 6 months ago - 22.8 thousand downloads total - 1 maintainer
gcapc 1.36.0
GC Aware Peak Caller7 versions - Latest release: 6 months ago - 1 dependent package - 26.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
spatzie 1.18.0
Identification of enriched motif pairs from chromatin interaction data7 versions - Latest release: 5 months ago - 9.17 thousand downloads total - 1 maintainer
Damsel 1.8.0
Damsel: an end to end analysis of DamID6 versions - Latest release: 5 months ago - 9.55 thousand downloads total - 1 stars on GitHub - 1 maintainer
PIPETS 1.8.0
Poisson Identification of PEaks from Term-Seq data7 versions - Latest release: 5 months ago - 8.35 thousand downloads total - 0 stars on GitHub - 1 maintainer
CexoR 1.50.0
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates7 versions - Latest release: 5 months ago - 34.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
PeacoQC 1.22.0
Peak-based selection of high quality cytometry data7 versions - Latest release: 5 months ago - 1 dependent package - 26.8 thousand downloads total - 22 stars on GitHub - 1 maintainer
yamss 1.38.0
Tools for high-throughput metabolomics7 versions - Latest release: 6 months ago - 32.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
Linnorm 2.36.0
Linear model and normality based normalization and transformation method (Linnorm)7 versions - Latest release: 6 months ago - 1 dependent package - 49.7 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
8 versions - Latest release: 2 months ago - 2 dependent packages - 334 thousand downloads total - 1 maintainer
DiffBind 3.22.2
Differential Binding Analysis of ChIP-Seq Peak Data8 versions - Latest release: 2 months ago - 2 dependent packages - 334 thousand downloads total - 1 maintainer
chromstaR 1.34.0 removed
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data5 versions - Latest release: over 1 year ago - 19.7 thousand downloads total - 8 stars on GitHub - 1 maintainer
proFIA 1.26.0 removed
Preprocessing of FIA-HRMS data1 version - Latest release: about 3 years ago - 8.96 thousand downloads total - 1 maintainer
exomePeak2 1.14.3 removed
Peak Calling and differential analysis for MeRIP-Seq6 versions - Latest release: almost 3 years ago - 8.74 thousand downloads total - 23 stars on GitHub - 1 maintainer
Related Keywords
Software
26
Sequencing
12
ChIPSeq
8
Coverage
8
GeneRegulation
7
FunctionalGenomics
7
Transcription
6
MassSpectrometry
5
Epigenetics
5
DifferentialPeakCalling
5
Preprocessing
5
Metabolomics
4
ImmunoOncology
4
DifferentialMethylation
4
Normalization
4
MultipleComparison
4
Genetics
4
DataImport
4
Classification
4
HistoneModification
3
RNASeq
3
Alignment
3
MethylSeq
2
FunctionalPrediction
2
HiC
2
DNA3DStructure
2
Transcriptomics
2
GeneExpression
2
Proteomics
2
BiologicalQuestion
2
HiddenMarkovModel
2
ATACSeq
2
BatchEffect
2
RIPSeq
2
Bayesian
2
BiomedicalInformatics
1
CellBiology
1
DNaseSeq
1
ReportWriting
1
GenePrediction
1
GeneSetEnrichment
1
feature-detection
1
mass-spectrometry
1
metabolomics
1
bioc-devel
1
GeneTarget
1
Clustering
1
DifferentialExpression
1
Network
1
SingleCell
1
Regression
1
Spatial
1
StatisticalMethod
1
Lipidomics
1
GenomeWideAssociation
1
GenomeAnnotation
1
DNASeq
1
chip-seq-analysis
1
genomic-data-analysis
1
nucleosome-positioning
1
r-package
1
Annotation
1
DataRepresentation
1
WorkflowStep
1
GenomeBrowsers
1
SequenceMatching
1
Visualization
1
FlowCytometry
1
QualityControl
1
ChipOnChip
1