bioconductor.org "PeakDetection" keyword
View the packages on the bioconductor.org package registry that are tagged with the "PeakDetection" keyword.
Top 2.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
DiffBind 3.20.0
Differential Binding Analysis of ChIP-Seq Peak Data6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
geneXtendeR 1.36.0
Optimized Functional Annotation Of ChIP-seq Data6 versions - Latest release: about 1 month ago - 20.1 thousand downloads total - 9 stars on GitHub - 1 maintainer
crupR 1.2.0
An R package to predict condition-specific enhancers from ChIP-seq data2 versions - Latest release: about 1 month ago - 1.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
HiCPotts 1.0.0
HiCPotts: Hierarchical Modeling to Identify and Correct Genomic Biases in Hi-C1 version - Latest release: 2 months ago - 799 downloads total - 0 stars on GitHub - 1 maintainer
idr2d 1.24.0
Irreproducible Discovery Rate for Genomic Interactions Data7 versions - Latest release: about 1 month ago - 11.5 thousand downloads total - 1 maintainer
gcapc 1.34.0
GC Aware Peak Caller6 versions - Latest release: about 1 month ago - 1 dependent package - 16.7 thousand downloads total - 9 stars on GitHub - 1 maintainer
consensusSeekeR 1.38.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...6 versions - Latest release: about 2 months ago - 2 dependent packages - 19 thousand downloads total - 1 stars on GitHub - 1 maintainer
CAGEfightR 1.30.0
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor6 versions - Latest release: about 1 month ago - 1 dependent package - 29.4 thousand downloads total - 9 stars on GitHub - 1 maintainer
BasicSTARRseq 1.38.0
Basic peak calling on STARR-seq data6 versions - Latest release: about 1 month ago - 19.4 thousand downloads total - 1 maintainer
yamss 1.36.0
Tools for high-throughput metabolomics6 versions - Latest release: about 1 month ago - 19.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
spatzie 1.15.1
Identification of enriched motif pairs from chromatin interaction data6 versions - Latest release: about 1 month ago - 6.89 thousand downloads total - 1 maintainer
TRESS 1.16.0
Toolbox for mRNA epigenetics sequencing analysis6 versions - Latest release: about 1 month ago - 1 dependent package - 9.04 thousand downloads total - 1 maintainer
Top 8.5% on bioconductor.org
7 versions - Latest release: about 1 month ago - 2 dependent packages - 305 thousand downloads total - 11 stars on GitHub - 1 maintainer
MassSpecWavelet 1.76.0 💰
Peak Detection for Mass Spectrometry data using wavelet-based algorithms7 versions - Latest release: about 1 month ago - 2 dependent packages - 305 thousand downloads total - 11 stars on GitHub - 1 maintainer
DEScan2 1.30.0
Differential Enrichment Scan 26 versions - Latest release: about 1 month ago - 14.9 thousand downloads total - 1 maintainer
ChIPanalyser 1.32.0
ChIPanalyser: Predicting Transcription Factor Binding Sites6 versions - Latest release: about 1 month ago - 15.3 thousand downloads total - 1 maintainer
ptairMS 1.18.0
Pre-processing PTR-TOF-MS Data6 versions - Latest release: about 1 month ago - 8.74 thousand downloads total - 7 stars on GitHub - 1 maintainer
PeacoQC 1.20.0
Peak-based selection of high quality cytometry data6 versions - Latest release: about 1 month ago - 1 dependent package - 18 thousand downloads total - 14 stars on GitHub - 1 maintainer
PIPETS 1.6.0
Poisson Identification of PEaks from Term-Seq data6 versions - Latest release: about 2 months ago - 4.56 thousand downloads total - 0 stars on GitHub - 1 maintainer
CexoR 1.48.0
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates6 versions - Latest release: about 2 months ago - 25.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
Damsel 1.6.0
Damsel: an end to end analysis of DamID5 versions - Latest release: about 1 month ago - 4.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
peakPantheR 1.24.0
Peak Picking and Annotation of High Resolution Experiments8 versions - Latest release: about 2 months ago - 11.1 thousand downloads total - 12 stars on GitHub - 1 maintainer
Linnorm 2.34.0
Linear model and normality based normalization and transformation method (Linnorm)6 versions - Latest release: about 2 months ago - 1 dependent package - 33.4 thousand downloads total - 1 maintainer
normr 1.36.0
Normalization and difference calling in ChIP-seq data6 versions - Latest release: about 1 month ago - 22.8 thousand downloads total - 11 stars on GitHub - 1 maintainer
chromstaR 1.34.0 removed
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data5 versions - Latest release: 8 months ago - 19.7 thousand downloads total - 8 stars on GitHub - 1 maintainer
NADfinder 1.34.0
Call wide peaks for sequencing data6 versions - Latest release: about 1 month ago - 15.7 thousand downloads total - 2 maintainers
proFIA 1.26.0 removed
Preprocessing of FIA-HRMS data1 version - Latest release: about 2 years ago - 8.96 thousand downloads total - 1 maintainer
exomePeak2 1.14.3 removed
Peak Calling and differential analysis for MeRIP-Seq6 versions - Latest release: about 2 years ago - 8.74 thousand downloads total - 23 stars on GitHub - 1 maintainer
Related Keywords
Software
27
Sequencing
12
Coverage
9
ChIPSeq
9
FunctionalGenomics
7
GeneRegulation
7
Transcription
6
DifferentialPeakCalling
6
Genetics
5
Preprocessing
5
Epigenetics
5
DataImport
5
MassSpectrometry
5
Normalization
4
MultipleComparison
4
Metabolomics
4
HistoneModification
4
DifferentialMethylation
4
ImmunoOncology
4
Classification
4
RNASeq
3
Alignment
3
GeneExpression
2
Transcriptomics
2
Proteomics
2
BiologicalQuestion
2
BatchEffect
2
HiC
2
DNA3DStructure
2
HiddenMarkovModel
2
Bayesian
2
FunctionalPrediction
2
RIPSeq
2
Annotation
2
MethylSeq
2
ChipOnChip
2
ATACSeq
2
GenomeAnnotation
2
Visualization
2
Lipidomics
1
DNASeq
1
SingleCell
1
Network
1
DNaseSeq
1
CellBiology
1
BiomedicalInformatics
1
DifferentialExpression
1
SequenceMatching
1
WorkflowStep
1
Clustering
1
FlowCytometry
1
metabolomics
1
QualityControl
1
bioc-devel
1
GenePrediction
1
GeneSetEnrichment
1
feature-detection
1
mass-spectrometry
1
epigenetics
1
functional-annotation
1
r
1
computational-biology
1
GeneTarget
1
chip-seq
1
c
1
GenomeWideAssociation
1
bioinformatics
1
Regression
1
Spatial
1
StatisticalMethod
1
bioconductor
1
NaturalLanguageProcessing
1
GO
1
chip-seq-analysis
1
genomic-data-analysis
1
nucleosome-positioning
1
r-package
1
DataRepresentation
1
GenomeBrowsers
1
ReportWriting
1