bioconductor.org "BiologicalQuestion" keyword
View the packages on the bioconductor.org package registry that are tagged with the "BiologicalQuestion" keyword.
OGRE 1.12.0
Calculate, visualize and analyse overlap between genomic regions5 versions - Latest release: 3 months ago - 5.82 thousand downloads total - 2 stars on GitHub - 1 maintainer
musicatk 2.2.0
Mutational Signature Comprehensive Analysis Toolkit6 versions - Latest release: 2 months ago - 8.97 thousand downloads total - 12 stars on GitHub - 1 maintainer
methylclock 1.14.0
Methylclock - DNA methylation-based clocks5 versions - Latest release: 3 months ago - 13 thousand downloads total - 40 stars on GitHub - 1 maintainer
ChIPanalyser 1.30.0
ChIPanalyser: Predicting Transcription Factor Binding Sites5 versions - Latest release: 3 months ago - 13.1 thousand downloads total - 1 maintainer
OncoSimulR 4.10.0
Forward Genetic Simulation of Cancer Progression with Epistasis6 versions - Latest release: 3 months ago - 20.7 thousand downloads total - 7 stars on GitHub - 1 maintainer
NoRCE 1.19.0
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment5 versions - Latest release: 3 months ago - 8.12 thousand downloads total - 1 stars on GitHub - 1 maintainer
projectR 1.24.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering5 versions - Latest release: 3 months ago - 1 dependent package - 11.4 thousand downloads total - 62 stars on GitHub - 1 maintainer
deltaCaptureC 1.22.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data6 versions - Latest release: 3 months ago - 8.42 thousand downloads total - 1 maintainer
qsvaR 1.12.0
Generate Quality Surrogate Variable Analysis for Degradation Correction5 versions - Latest release: 3 months ago - 7.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetID 1.26.0
Network-based prioritization of putative metabolite IDs5 versions - Latest release: 3 months ago - 9.55 thousand downloads total - 1 stars on GitHub - 1 maintainer
CNVMetrics 1.12.0
Copy Number Variant Metrics5 versions - Latest release: 3 months ago - 5.45 thousand downloads total - 4 stars on GitHub - 1 maintainer
similaRpeak 1.40.0
Metrics to estimate a level of similarity between two ChIP-Seq profiles5 versions - Latest release: 3 months ago - 1 dependent package - 18.5 thousand downloads total - 7 stars on GitHub - 1 maintainer
YAPSA 1.34.0
Yet Another Package for Signature Analysis5 versions - Latest release: 3 months ago - 24.1 thousand downloads total - 1 maintainer
rexposome 1.30.0
Exposome exploration and outcome data analysis5 versions - Latest release: 3 months ago - 1 dependent package - 14.9 thousand downloads total - 1 maintainer
methInheritSim 1.30.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data5 versions - Latest release: 3 months ago - 1 dependent package - 12.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
OMICsPCA 1.26.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...5 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
tricycle 1.16.0
tricycle: Transferable Representation and Inference of cell cycle5 versions - Latest release: 3 months ago - 1 dependent package - 15 thousand downloads total - 25 stars on GitHub - 1 maintainer
epimutacions 1.12.0
Robust outlier identification for DNA methylation data6 versions - Latest release: 3 months ago - 5.79 thousand downloads total - 0 stars on GitHub - 1 maintainer
GSALightning 1.36.0
Fast Permutation-based Gene Set Analysis5 versions - Latest release: 3 months ago - 13.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
pram 1.24.0
Pooling RNA-seq datasets for assembling transcript models5 versions - Latest release: 3 months ago - 9.18 thousand downloads total - 1 stars on GitHub - 1 maintainer
CoSIA 1.8.0
An Investigation Across Different Species and Tissues6 versions - Latest release: 3 months ago - 3.12 thousand downloads total - 1 maintainer
consensusSeekeR 1.36.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...5 versions - Latest release: 3 months ago - 2 dependent packages - 16.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
CatsCradle 1.2.0
This package provides methods for analysing spatial transcriptomics data and for discovering gene...3 versions - Latest release: 3 months ago - 1.98 thousand downloads total - 3 stars on GitHub - 1 maintainer
discordant 1.32.0
The Discordant Method: A Novel Approach for Differential Correlation5 versions - Latest release: 3 months ago - 16 thousand downloads total - 10 stars on GitHub - 1 maintainer
VplotR 1.18.0
Set of tools to make V-plots and compute footprint profiles6 versions - Latest release: 3 months ago - 7.87 thousand downloads total - 11 stars on GitHub - 1 maintainer
limpa 1.0.5
Quantification and Differential Analysis of Proteomics Data3 versions - Latest release: 29 days ago - 999 downloads total - 1 maintainer
INDEED 2.22.0
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis...5 versions - Latest release: 3 months ago - 8.74 thousand downloads total - 4 stars on GitHub - 2 maintainers
decompTumor2Sig 2.24.0
Decomposition of individual tumors into mutational signatures by signature refitting5 versions - Latest release: 3 months ago - 1 dependent package - 14.5 thousand downloads total - 1 maintainer
TrajectoryGeometry 1.16.0
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns7 versions - Latest release: 3 months ago - 5.62 thousand downloads total - 1 maintainer
TFARM 1.30.0
Transcription Factors Association Rules Miner5 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 1 maintainer
CIMICE 1.16.0
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution5 versions - Latest release: 3 months ago - 6.55 thousand downloads total - 0 stars on GitHub - 1 maintainer
enrichViewNet 1.6.0
From functional enrichment results to biological networks4 versions - Latest release: 3 months ago - 4.08 thousand downloads total - 5 stars on GitHub - 1 maintainer
methylInheritance 1.32.0
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multip...5 versions - Latest release: 3 months ago - 1 dependent package - 13.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
TFHAZ 1.30.0
Transcription Factor High Accumulation Zones5 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 1 maintainer
RJMCMCNucleosomes 1.30.0
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-rea...4 versions - Latest release: 8 months ago - 11.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
Software
35
StatisticalMethod
15
Sequencing
11
Transcription
7
DifferentialExpression
6
ImmunoOncology
6
Coverage
6
MultipleComparison
5
SingleCell
5
GeneExpression
5
ChIPSeq
5
r
5
bioconductor
4
Genetics
4
DNAMethylation
4
ResearchField
4
DataImport
4
SomaticMutation
4
WorkflowStep
4
r-package
4
Technology
3
Epigenetics
3
Infrastructure
3
RNASeq
3
Clustering
3
Visualization
3
Transcriptomics
3
Normalization
3
BiomedicalInformatics
3
Preprocessing
3
MethylSeq
2
metrics
2
WholeGenome
2
NucleosomePositioning
2
bioconductor-package
2
DifferentialMethylation
2
DNASeq
2
GenomicVariation
2
MassSpectrometry
2
DataRepresentation
2
Bayesian
2
inheritance
2
Network
2
DimensionReduction
2
Alignment
2
GUI
2
nucleosome-positioning
2
PeakDetection
2
GO
2
GenomeAnnotation
2
GeneSetEnrichment
2
cnv
1
transcript-model
1
ThirdPartyClient
1
chip-seq-analysis
1
genomic-data-analysis
1
Spatial
1
Microarray
1
mRNAMicroarray
1
ATACSeq
1
reversible-jump-mcmc
1
nucleosomes
1
multinomial-dirichlet-prior
1
genome-wide-profiling
1
c-plus-plus
1
bayesian-t-mixture
1
permutation
1
monte-carlo-sampling
1
differentially-methylated-elements
1
cpg
1
bioinformatics
1
analysis
1
network
1
functional-enrichment
1
cystocape
1
NetworkEnrichment
1
Phylogenetics
1
NetworkInference
1
GraphAndNetwork
1
SNP
1
Metabolomics
1
Regression
1
Proteomics
1
CopyNumberVariation
1
KEGG
1
AssayDomain
1
rstats
1
qsva
1
human
1
degradation
1
brain
1
GeneRegulation
1
FunctionalPrediction
1
GenomeAssembly
1
GeneTarget
1
SequenceMatching
1
ChipOnChip
1
VariantAnnotation
1
Metagenomics
1
Annotation
1