Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "BiologicalQuestion" keyword
rexposome 1.24.1
Exposome exploration and outcome data analysis3 versions - Latest release: 6 months ago - 1 dependent package - 10.3 thousand downloads total - 1 maintainer
OMICsPCA 1.20.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...3 versions - Latest release: 6 months ago - 7.29 thousand downloads total - 1 maintainer
similaRpeak 1.34.0
Metrics to estimate a level of similarity between two ChIP-Seq profiles3 versions - Latest release: 6 months ago - 1 dependent package - 14 thousand downloads total - 7 stars on GitHub - 1 maintainer
methylInheritance 1.26.0
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multip...3 versions - Latest release: 6 months ago - 1 dependent package - 9.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
TFHAZ 1.24.0
Transcription Factor High Accumulation Zones3 versions - Latest release: 6 months ago - 7.41 thousand downloads total - 1 maintainer
RJMCMCNucleosomes 1.26.0
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-rea...3 versions - Latest release: 6 months ago - 9.13 thousand downloads total - 0 stars on GitHub - 1 maintainer
GSALightning 1.30.0
Fast Permutation-based Gene Set Analysis3 versions - Latest release: 6 months ago - 10.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
INDEED 2.16.0
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis...3 versions - Latest release: 6 months ago - 5.56 thousand downloads total - 4 stars on GitHub - 2 maintainers
decompTumor2Sig 2.18.0
Decomposition of individual tumors into mutational signatures by signature refitting3 versions - Latest release: 6 months ago - 1 dependent package - 8.89 thousand downloads total - 1 maintainer
methInheritSim 1.24.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data3 versions - Latest release: 6 months ago - 1 dependent package - 8.46 thousand downloads total - 1 stars on GitHub - 1 maintainer
deltaCaptureC 1.16.1
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data4 versions - Latest release: about 1 month ago - 4.87 thousand downloads total - 1 maintainer
TFARM 1.24.0
Transcription Factors Association Rules Miner3 versions - Latest release: 6 months ago - 7.46 thousand downloads total - 1 maintainer
MetID 1.20.0
Network-based prioritization of putative metabolite IDs3 versions - Latest release: 6 months ago - 5.66 thousand downloads total - 1 stars on GitHub - 1 maintainer
TrajectoryGeometry 1.10.1
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns4 versions - Latest release: 2 months ago - 2.54 thousand downloads total - 1 maintainer
consensusSeekeR 1.30.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...3 versions - Latest release: 6 months ago - 2 dependent packages - 12.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
ChIPanalyser 1.24.0
ChIPanalyser: Predicting Transcription Factor Binding Sites3 versions - Latest release: 6 months ago - 8.35 thousand downloads total - 1 maintainer
YAPSA 1.28.0
Yet Another Package for Signature Analysis3 versions - Latest release: 6 months ago - 16.5 thousand downloads total - 1 maintainer
discordant 1.26.0
The Discordant Method: A Novel Approach for Differential Correlation3 versions - Latest release: 6 months ago - 11.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
CoSIA 1.2.0
An Investigation Across Different Species and Tissues3 versions - Latest release: 6 months ago - 1.05 thousand downloads total - 1 maintainer
CIMICE 1.10.0
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution3 versions - Latest release: 6 months ago - 3.06 thousand downloads total - 0 stars on GitHub - 1 maintainer
OncoSimulR 4.4.0
Forward Genetic Simulation of Cancer Progression with Epistasis3 versions - Latest release: 6 months ago - 15.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
tricycle 1.10.0
tricycle: Transferable Representation and Inference of cell cycle3 versions - Latest release: 6 months ago - 1 dependent package - 7.04 thousand downloads total - 15 stars on GitHub - 1 maintainer
epimutacions 1.6.1
Robust outlier identification for DNA methylation data4 versions - Latest release: 6 months ago - 2.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
projectR 1.20.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering3 versions - Latest release: 8 days ago - 1 dependent package - 7.22 thousand downloads total - 62 stars on GitHub - 1 maintainer
enrichViewNet 1.2.0
From functional enrichment results to biological networks2 versions - Latest release: 10 days ago - 930 downloads total - 5 stars on GitHub - 1 maintainer
methylclock 1.10.0
Methylclock - DNA methylation-based clocks3 versions - Latest release: 11 days ago - 6.34 thousand downloads total - 32 stars on GitHub - 1 maintainer
qsvaR 1.8.0
Generate Quality Surrogate Variable Analysis for Degradation Correction3 versions - Latest release: 19 days ago - 2.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
VplotR 1.14.0
Set of tools to make V-plots and compute footprint profiles4 versions - Latest release: 20 days ago - 3.73 thousand downloads total - 8 stars on GitHub - 1 maintainer
CNVMetrics 1.6.0
Copy Number Variant Metrics2 versions - Latest release: 6 months ago - 1.86 thousand downloads total - 5 stars on GitHub - 1 maintainer
musicatk 1.12.0
Mutational Signature Comprehensive Analysis Toolkit2 versions - Latest release: 6 months ago - 4.45 thousand downloads total - 12 stars on GitHub - 1 maintainer
OGRE 1.6.0
Calculate, visualize and analyse overlap between genomic regions2 versions - Latest release: 6 months ago - 1.77 thousand downloads total - 2 stars on GitHub - 1 maintainer
pram 1.18.0
Pooling RNA-seq datasets for assembling transcript models2 versions - Latest release: 6 months ago - 5.11 thousand downloads total - 1 stars on GitHub - 1 maintainer
NoRCE 1.14.0
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment2 versions - Latest release: 6 months ago - 4.23 thousand downloads total - 1 stars on GitHub - 1 maintainer
Related Keywords
Software
33
StatisticalMethod
14
Sequencing
11
Transcription
7
ImmunoOncology
6
r
6
Coverage
6
ChIPSeq
5
DifferentialExpression
5
bioconductor
5
MultipleComparison
5
ResearchField
4
DNAMethylation
4
SomaticMutation
4
WorkflowStep
4
SingleCell
4
Genetics
4
GeneExpression
3
Technology
3
RNASeq
3
Normalization
3
r-package
3
Infrastructure
3
Visualization
3
Clustering
3
BiomedicalInformatics
3
DataImport
3
Epigenetics
3
bioconductor-package
2
inheritance
2
DataRepresentation
2
Network
2
Preprocessing
2
NucleosomePositioning
2
GO
2
GenomicVariation
2
DimensionReduction
2
GeneSetEnrichment
2
DNASeq
2
metrics
2
GUI
2
DifferentialMethylation
2
MethylSeq
2
GenomeAnnotation
2
Alignment
2
WholeGenome
2
Transcriptomics
2
PeakDetection
2
FunctionalPrediction
1
GeneRegulation
1
NetworkEnrichment
1
cystocape
1
functional-enrichment
1
Phylogenetics
1
Classification
1
NetworkInference
1
GraphAndNetwork
1
ThirdPartyClient
1
GenomeAssembly
1
GeneTarget
1
transcript-model
1
rna-seq
1
genome-annotation
1
GenePrediction
1
Metagenomics
1
Annotation
1
VariantAnnotation
1
r-language
1
package
1
copy-number-variation
1
cnv
1
CopyNumberVariation
1
ATACSeq
1
rstats
1
qsva
1
human
1
degradation
1
brain
1
network
1
multinomial-dirichlet-prior
1
genome-wide-profiling
1
c-plus-plus
1
bayesian-t-mixture
1
Bayesian
1
permutation
1
monte-carlo-sampling
1
differentially-methylated-elements
1
cpg
1
bioinformatics
1
analysis
1
EpigeneticsWorkflow
1
FunctionalGenomics
1
GeneticVariability
1
chip-seq
1
chip-profiles
1
PrincipalComponent
1
Workflow
1
mRNAMicroarray
1
Microarray
1
SequenceMatching
1