bioconductor.org "BiologicalQuestion" keyword
decompTumor2Sig 2.26.0
Decomposition of individual tumors into mutational signatures by signature refitting6 versions - Latest release: 4 months ago - 1 dependent package - 17.4 thousand downloads total - 1 maintainer
musicatk 2.4.0
Mutational Signature Comprehensive Analysis Toolkit9 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 12 stars on GitHub - 1 maintainer
TFARM 1.32.0
Transcription Factors Association Rules Miner6 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 1 maintainer
NoRCE 1.22.0
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment6 versions - Latest release: 3 months ago - 10.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
deltaCaptureC 1.24.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data7 versions - Latest release: 4 months ago - 10.6 thousand downloads total - 1 maintainer
projectR 1.26.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering6 versions - Latest release: 3 months ago - 1 dependent package - 14.7 thousand downloads total - 62 stars on GitHub - 1 maintainer
OMICsPCA 1.28.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...6 versions - Latest release: 3 months ago - 16.6 thousand downloads total - 1 maintainer
epimutacions 1.14.0
Robust outlier identification for DNA methylation data7 versions - Latest release: 4 months ago - 8.26 thousand downloads total - 0 stars on GitHub - 1 maintainer
CoSIA 1.10.1
An Investigation Across Different Species and Tissues8 versions - Latest release: 3 months ago - 5.2 thousand downloads total - 1 maintainer
ChIPanalyser 1.32.0
ChIPanalyser: Predicting Transcription Factor Binding Sites6 versions - Latest release: 3 months ago - 16.2 thousand downloads total - 1 maintainer
MetID 1.28.0
Network-based prioritization of putative metabolite IDs6 versions - Latest release: 4 months ago - 12.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
similaRpeak 1.42.0
Metrics to estimate a level of similarity between two ChIP-Seq profiles6 versions - Latest release: 4 months ago - 1 dependent package - 21.7 thousand downloads total - 7 stars on GitHub - 1 maintainer
enrichViewNet 1.8.1
From functional enrichment results to biological networks7 versions - Latest release: about 1 month ago - 6.64 thousand downloads total - 5 stars on GitHub - 1 maintainer
OGRE 1.14.0
Calculate, visualize and analyse overlap between genomic regions6 versions - Latest release: 3 months ago - 7.73 thousand downloads total - 2 stars on GitHub - 1 maintainer
TFHAZ 1.32.0
Transcription Factor High Accumulation Zones6 versions - Latest release: 3 months ago - 14.8 thousand downloads total - 1 maintainer
CIMICE 1.18.0
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution6 versions - Latest release: 4 months ago - 8.64 thousand downloads total - 0 stars on GitHub - 1 maintainer
VplotR 1.20.0
Set of tools to make V-plots and compute footprint profiles7 versions - Latest release: 4 months ago - 10.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
TrajectoryGeometry 1.18.0
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns8 versions - Latest release: 4 months ago - 7.48 thousand downloads total - 1 maintainer
YAPSA 1.36.1
Yet Another Package for Signature Analysis7 versions - Latest release: 3 months ago - 28.7 thousand downloads total - 1 maintainer
limpa 1.2.5
Quantification and Differential Analysis of Proteomics Data7 versions - Latest release: 12 days ago - 4.3 thousand downloads total - 17 stars on GitHub - 1 maintainer
CNVMetrics 1.14.2
Copy Number Variant Metrics7 versions - Latest release: about 2 months ago - 7.61 thousand downloads total - 4 stars on GitHub - 1 maintainer
pram 1.26.0
Pooling RNA-seq datasets for assembling transcript models6 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 1 stars on GitHub - 1 maintainer
tricycle 1.18.0
tricycle: Transferable Representation and Inference of cell cycle6 versions - Latest release: 4 months ago - 1 dependent package - 20.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
RJMCMCNucleosomes 1.30.0
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-rea...4 versions - Latest release: about 1 year ago - 11.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
CatsCradle 1.4.2
This package provides methods for analysing spatial transcriptomics data and for discovering gene...5 versions - Latest release: about 1 month ago - 4.24 thousand downloads total - 3 stars on GitHub - 1 maintainer
INDEED 2.24.0
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis...6 versions - Latest release: 4 months ago - 10.7 thousand downloads total - 4 stars on GitHub - 2 maintainers
methInheritSim 1.32.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data6 versions - Latest release: 4 months ago - 1 dependent package - 15.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
OncoSimulR 4.12.0
Forward Genetic Simulation of Cancer Progression with Epistasis7 versions - Latest release: 3 months ago - 24 thousand downloads total - 7 stars on GitHub - 1 maintainer
discordant 1.34.0
The Discordant Method: A Novel Approach for Differential Correlation6 versions - Latest release: 3 months ago - 19.2 thousand downloads total - 10 stars on GitHub - 1 maintainer
consensusSeekeR 1.38.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...6 versions - Latest release: 4 months ago - 2 dependent packages - 19.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
GSALightning 1.38.0
Fast Permutation-based Gene Set Analysis6 versions - Latest release: 4 months ago - 15.5 thousand downloads total - 5 stars on GitHub - 1 maintainer
methylclock 1.16.0
Methylclock - DNA methylation-based clocks6 versions - Latest release: 4 months ago - 17.3 thousand downloads total - 46 stars on GitHub - 1 maintainer
methylInheritance 1.34.0
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multip...7 versions - Latest release: 3 months ago - 1 dependent package - 16.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
qsvaR 1.14.0
Generate Quality Surrogate Variable Analysis for Degradation Correction6 versions - Latest release: 4 months ago - 9.49 thousand downloads total - 0 stars on GitHub - 1 maintainer
rexposome 1.32.0
Exposome exploration and outcome data analysis6 versions - Latest release: 3 months ago - 1 dependent package - 19.2 thousand downloads total - 1 maintainer
Related Keywords
Software
35
StatisticalMethod
15
Sequencing
11
Transcription
7
ImmunoOncology
6
DifferentialExpression
6
Coverage
6
MultipleComparison
5
SingleCell
5
r
5
GeneExpression
5
ChIPSeq
5
DNAMethylation
4
DataImport
4
WorkflowStep
4
ResearchField
4
bioconductor
4
SomaticMutation
4
r-package
4
Genetics
4
Technology
3
Preprocessing
3
Normalization
3
Visualization
3
Transcriptomics
3
RNASeq
3
Infrastructure
3
Clustering
3
Epigenetics
3
BiomedicalInformatics
3
MassSpectrometry
2
Bayesian
2
nucleosome-positioning
2
NucleosomePositioning
2
DifferentialMethylation
2
MethylSeq
2
DNASeq
2
GenomicVariation
2
WholeGenome
2
inheritance
2
metrics
2
bioconductor-package
2
GO
2
Network
2
GeneSetEnrichment
2
GUI
2
DimensionReduction
2
DataRepresentation
2
Alignment
2
GenomeAnnotation
2
PeakDetection
2
genomic-data-analysis
1
monte-carlo-sampling
1
genome-annotation
1
rna-seq
1
transcript-model
1
bayesian-t-mixture
1
c-plus-plus
1
genome-wide-profiling
1
multinomial-dirichlet-prior
1
permutation
1
brain
1
differentially-methylated-elements
1
nucleosomes
1
reversible-jump-mcmc
1
Spatial
1
Metabolomics
1
cpg
1
chip-seq-analysis
1
degradation
1
human
1
bisulphite-sequencing
1
qsva
1
methylation
1
ExperimentalDesign
1
bioinformatics
1
simulation
1
Microarray
1
mRNAMicroarray
1
Classification
1
rstats
1
analysis
1
NetworkEnrichment
1
chip-seq
1
chip-profiles
1
KEGG
1
AssayDomain
1
SequenceMatching
1
ChipOnChip
1
ThirdPartyClient
1
Workflow
1
PrincipalComponent
1
GeneticVariability
1
FunctionalGenomics
1
EpigeneticsWorkflow
1
GeneRegulation
1
FunctionalPrediction
1
GenomeAssembly
1
GeneTarget
1
VariantAnnotation
1