bioconductor.org "BiologicalQuestion" keyword
OncoSimulR 4.14.0
Forward Genetic Simulation of Cancer Progression with Epistasis8 versions - Latest release: 5 months ago - 36.8 thousand downloads total - 8 stars on GitHub - 1 maintainer
discordant 1.36.0
The Discordant Method: A Novel Approach for Differential Correlation7 versions - Latest release: 5 months ago - 30.5 thousand downloads total - 10 stars on GitHub - 1 maintainer
consensusSeekeR 1.40.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...7 versions - Latest release: 5 months ago - 2 dependent packages - 32.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
INDEED 2.26.0
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis...7 versions - Latest release: 4 months ago - 18.2 thousand downloads total - 5 stars on GitHub - 2 maintainers
tricycle 1.20.0
tricycle: Transferable Representation and Inference of cell cycle7 versions - Latest release: 5 months ago - 1 dependent package - 31.6 thousand downloads total - 31 stars on GitHub - 1 maintainer
OGRE 1.16.0
Calculate, visualize and analyse overlap between genomic regions7 versions - Latest release: 5 months ago - 11.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
limpa 1.4.0
Quantification and Differential Analysis of Proteomics Data8 versions - Latest release: 5 months ago - 12 thousand downloads total - 24 stars on GitHub - 1 maintainer
decompTumor2Sig 2.28.1
Decomposition of individual tumors into mutational signatures by signature refitting8 versions - Latest release: 2 months ago - 1 dependent package - 23.8 thousand downloads total - 1 maintainer
VplotR 1.22.0
Set of tools to make V-plots and compute footprint profiles8 versions - Latest release: 5 months ago - 17.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
qsvaR 1.16.0
Generate Quality Surrogate Variable Analysis for Degradation Correction7 versions - Latest release: 5 months ago - 14.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
CatsCradle 1.6.1
This package provides methods for analysing spatial transcriptomics data and for discovering gene...7 versions - Latest release: 3 months ago - 8.94 thousand downloads total - 7 stars on GitHub - 1 maintainer
methInheritSim 1.34.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data7 versions - Latest release: 4 months ago - 1 dependent package - 22.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
NoRCE 1.24.0
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment7 versions - Latest release: 5 months ago - 16.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
ChIPanalyser 1.34.0
ChIPanalyser: Predicting Transcription Factor Binding Sites7 versions - Latest release: 5 months ago - 22.8 thousand downloads total - 1 maintainer
CoSIA 1.12.1
An Investigation Across Different Species and Tissues10 versions - Latest release: 3 months ago - 10.9 thousand downloads total - 1 maintainer
CIMICE 1.20.0
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution7 versions - Latest release: 5 months ago - 13.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
pram 1.28.0
Pooling RNA-seq datasets for assembling transcript models7 versions - Latest release: 5 months ago - 18.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
methylInheritance 1.36.0
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multip...8 versions - Latest release: 5 months ago - 1 dependent package - 23.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetID 1.30.0
Network-based prioritization of putative metabolite IDs7 versions - Latest release: 5 months ago - 16.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
projectR 1.28.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering7 versions - Latest release: 5 months ago - 1 dependent package - 19.7 thousand downloads total - 65 stars on GitHub - 1 maintainer
similaRpeak 1.44.0
Metrics to estimate a level of similarity between two ChIP-Seq profiles7 versions - Latest release: 5 months ago - 1 dependent package - 29 thousand downloads total - 7 stars on GitHub - 1 maintainer
rexposome 1.34.2
Exposome exploration and outcome data analysis8 versions - Latest release: 5 months ago - 1 dependent package - 28.1 thousand downloads total - 1 maintainer
GSALightning 1.40.0
Fast Permutation-based Gene Set Analysis7 versions - Latest release: 6 months ago - 20.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
CNVMetrics 1.16.0
Copy Number Variant Metrics8 versions - Latest release: 6 months ago - 13.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
enrichViewNet 1.10.0
From functional enrichment results to biological networks8 versions - Latest release: 4 months ago - 10.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
YAPSA 1.38.0
Yet Another Package for Signature Analysis8 versions - Latest release: 5 months ago - 44 thousand downloads total - 1 maintainer
methylclock 1.18.0
Methylclock - DNA methylation-based clocks7 versions - Latest release: 5 months ago - 30.5 thousand downloads total - 55 stars on GitHub - 1 maintainer
TFARM 1.34.0
Transcription Factors Association Rules Miner7 versions - Latest release: 5 months ago - 24.2 thousand downloads total - 1 maintainer
RJMCMCNucleosomes 1.36.0
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-rea...5 versions - Latest release: about 2 months ago - 22.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
deltaCaptureC 1.26.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data8 versions - Latest release: 5 months ago - 19.7 thousand downloads total - 1 maintainer
OMICsPCA 1.30.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...7 versions - Latest release: 5 months ago - 28.3 thousand downloads total - 1 maintainer
TrajectoryGeometry 1.20.0
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns9 versions - Latest release: 6 months ago - 13.8 thousand downloads total - 1 maintainer
TFHAZ 1.34.0
Transcription Factor High Accumulation Zones7 versions - Latest release: 5 months ago - 26.8 thousand downloads total - 1 maintainer
epimutacions 1.16.2
Robust outlier identification for DNA methylation data9 versions - Latest release: about 1 month ago - 17.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
musicatk 2.6.0
Mutational Signature Comprehensive Analysis Toolkit10 versions - Latest release: 5 months ago - 22.7 thousand downloads total - 12 stars on GitHub - 1 maintainer
Related Keywords
Software
35
StatisticalMethod
15
Sequencing
11
Transcription
7
Coverage
6
DifferentialExpression
6
ImmunoOncology
6
r
5
GeneExpression
5
SingleCell
5
MultipleComparison
5
ChIPSeq
5
DNAMethylation
4
SomaticMutation
4
WorkflowStep
4
ResearchField
4
DataImport
4
Genetics
4
r-package
4
bioconductor
4
Epigenetics
3
Technology
3
RNASeq
3
Preprocessing
3
Normalization
3
Infrastructure
3
Visualization
3
BiomedicalInformatics
3
Clustering
3
Transcriptomics
3
NucleosomePositioning
2
DNASeq
2
GO
2
GeneSetEnrichment
2
GenomeAnnotation
2
Bayesian
2
DimensionReduction
2
inheritance
2
nucleosome-positioning
2
GUI
2
WholeGenome
2
MethylSeq
2
GenomicVariation
2
PeakDetection
2
Alignment
2
DataRepresentation
2
MassSpectrometry
2
metrics
2
bioconductor-package
2
DifferentialMethylation
2
Network
2
qsva
1
rstats
1
multinomial-dirichlet-prior
1
genome-wide-profiling
1
EpigeneticsWorkflow
1
transcript-model
1
FunctionalGenomics
1
GeneticVariability
1
c-plus-plus
1
SNP
1
Annotation
1
PrincipalComponent
1
Workflow
1
bayesian-t-mixture
1
Metagenomics
1
ThirdPartyClient
1
brain
1
Spatial
1
Phylogenetics
1
NetworkInference
1
degradation
1
GraphAndNetwork
1
network
1
functional-enrichment
1
cystocape
1
human
1
NetworkEnrichment
1
r-language
1
package
1
copy-number-variation
1
cnv
1
CopyNumberVariation
1
reversible-jump-mcmc
1
nucleosomes
1
rna-seq
1
permutation
1
monte-carlo-sampling
1
differentially-methylated-elements
1
cpg
1
bioinformatics
1
analysis
1
KEGG
1
AssayDomain
1
Metabolomics
1
ExperimentalDesign
1
Classification
1
SequenceMatching
1
ChipOnChip
1
GeneRegulation
1