bioconductor.org "DifferentialPeakCalling" keyword
View the packages on the bioconductor.org package registry that are tagged with the "DifferentialPeakCalling" keyword.
Top 2.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
DiffBind 3.20.0
Differential Binding Analysis of ChIP-Seq Peak Data6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
geneXtendeR 1.36.0
Optimized Functional Annotation Of ChIP-seq Data6 versions - Latest release: about 1 month ago - 20.1 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
7 versions - Latest release: about 1 month ago - 5 dependent packages - 462 thousand downloads total - 1 maintainer
metapod 1.18.0
Meta-Analyses on P-Values of Differential Analyses7 versions - Latest release: about 1 month ago - 5 dependent packages - 462 thousand downloads total - 1 maintainer
crupR 1.2.0
An R package to predict condition-specific enhancers from ChIP-seq data2 versions - Latest release: about 1 month ago - 1.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
SPICEY 1.0.0
Calculates cell type specificity from single cell data1 version - Latest release: 2 months ago - 565 downloads total - 0 stars on GitHub - 1 maintainer
Top 5.7% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 125 thousand downloads total - 1 maintainer
GreyListChIP 1.42.0
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs6 versions - Latest release: about 1 month ago - 2 dependent packages - 125 thousand downloads total - 1 maintainer
Top 4.4% on bioconductor.org
7 versions - Latest release: about 1 month ago - 8 dependent packages - 103 thousand downloads total - 1 maintainer
csaw 1.44.0
ChIP-Seq Analysis with Windows7 versions - Latest release: about 1 month ago - 8 dependent packages - 103 thousand downloads total - 1 maintainer
IWTomics 1.33.0
Interval-Wise Testing for Omics Data6 versions - Latest release: about 1 month ago - 16.8 thousand downloads total - 1 maintainer
Top 8.7% on bioconductor.org
6 versions - Latest release: about 1 month ago - 1 dependent package - 36.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
regionReport 1.44.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results6 versions - Latest release: about 1 month ago - 1 dependent package - 36.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
ChromSCape 1.20.0
Analysis of single-cell epigenomics datasets with a Shiny App6 versions - Latest release: about 2 months ago - 9.56 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
6 versions - Latest release: about 1 month ago - 6 dependent packages - 99 thousand downloads total - 44 stars on GitHub - 1 maintainer
derfinder 1.44.0
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via ...6 versions - Latest release: about 1 month ago - 6 dependent packages - 99 thousand downloads total - 44 stars on GitHub - 1 maintainer
MMDiff2 1.38.0
Statistical Testing for ChIP-Seq data sets6 versions - Latest release: about 2 months ago - 16.8 thousand downloads total - 1 maintainer
CSSQ 1.22.0
Chip-seq Signal Quantifier Pipeline6 versions - Latest release: about 2 months ago - 9.3 thousand downloads total - 1 maintainer
Motif2Site 1.14.0
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across condi...6 versions - Latest release: about 2 months ago - 6.84 thousand downloads total - 0 stars on GitHub - 1 maintainer
normr 1.36.0
Normalization and difference calling in ChIP-seq data6 versions - Latest release: about 1 month ago - 22.8 thousand downloads total - 11 stars on GitHub - 1 maintainer
chromstaR 1.34.0 removed
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data5 versions - Latest release: 8 months ago - 19.7 thousand downloads total - 8 stars on GitHub - 1 maintainer
chromswitch 1.22.0 removed
An R package to detect chromatin state switches from epigenomic data1 version - Latest release: about 2 years ago - 7.34 thousand downloads total - 4 stars on GitHub - 1 maintainer
exomePeak2 1.14.3 removed
Peak Calling and differential analysis for MeRIP-Seq6 versions - Latest release: about 2 years ago - 8.74 thousand downloads total - 23 stars on GitHub - 1 maintainer
Related Keywords
Software
18
ChIPSeq
11
Sequencing
10
MultipleComparison
8
Coverage
6
PeakDetection
6
Normalization
5
Epigenetics
5
HistoneModification
5
bioconductor
4
r
4
DifferentialExpression
4
DifferentialMethylation
4
ImmunoOncology
4
Transcription
3
Visualization
3
GenomeAnnotation
3
Preprocessing
3
Genetics
3
DataImport
3
RNASeq
3
Annotation
3
ReportWriting
3
MethylSeq
3
FunctionalGenomics
3
ATACSeq
3
Clustering
2
Classification
2
SingleCell
2
GeneExpression
2
GeneTarget
2
QualityControl
2
GeneRegulation
2
epigenomics
2
derfinder
2
chip-seq
2
Alignment
2
bioinformatics
2
RIPSeq
2
rstats
2
rnaseq
2
GeneSetEnrichment
1
BatchEffect
1
ChipOnChip
1
Pathways
1
PrincipalComponent
1
ShinyApps
1
shiny
1
single-cell
1
annotation-agnostic
1
SequenceMatching
1
Bayesian
1
HiddenMarkovModel
1
GO
1
NaturalLanguageProcessing
1
c
1
computational-biology
1
epigenetics
1
functional-annotation
1
FunctionalPrediction
1
DNaseSeq
1
Transcriptomics
1
CellBiology
1
StatisticalMethod
1
BiomedicalInformatics
1
deseq2
1
edger
1
regionreport
1
rmarkdown
1