Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "r-package" keyword
HiLDA 1.16.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...3 versions - Latest release: 6 months ago - 1 dependent package - 5.69 thousand downloads total - 3 stars on GitHub - 1 maintainer
target 1.16.0
Predict Combined Function of Transcription Factors3 versions - Latest release: 6 months ago - 4.73 thousand downloads total - 4 stars on GitHub - 1 maintainer
Voyager 1.4.0
From geospatial to spatial omics3 versions - Latest release: 6 months ago - 2.86 thousand downloads total - 60 stars on GitHub - 1 maintainer
MsDataHub 1.2.0
Mass Spectrometry Data on ExperimentHub3 versions - Latest release: 6 months ago - 2 dependent packages - 1.52 thousand downloads total - 1 stars on GitHub - 1 maintainer
CBEA 1.3.0
Competitive Balances for Taxonomic Enrichment Analysis in R3 versions - Latest release: 7 months ago - 2.75 thousand downloads total - 5 stars on GitHub - 1 maintainer
CopyNumberPlots 1.18.0
Create Copy-Number Plots using karyoploteR functionality3 versions - Latest release: 6 months ago - 2 dependent packages - 9.48 thousand downloads total - 6 stars on GitHub - 1 maintainer
decoupleR 2.9.7
decoupleR: Ensemble of computational methods to infer biological activities from omics data3 versions - Latest release: 8 days ago - 3 dependent packages - 25.4 thousand downloads total - 154 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
6 versions - Latest release: 8 days ago - 5 dependent packages - 147 thousand downloads total - 87 stars on GitHub - 1 maintainer
glmGamPoi 1.16.0
Fit a Gamma-Poisson Generalized Linear Model6 versions - Latest release: 8 days ago - 5 dependent packages - 147 thousand downloads total - 87 stars on GitHub - 1 maintainer
enrichViewNet 1.2.0
From functional enrichment results to biological networks2 versions - Latest release: 11 days ago - 930 downloads total - 5 stars on GitHub - 1 maintainer
POMA 1.14.0
Tools for Omics Data Analysis3 versions - Latest release: 12 days ago - 1 dependent package - 4.86 thousand downloads total - 10 stars on GitHub - 1 maintainer
fobitools 1.12.0
Tools for Manipulating the FOBI Ontology3 versions - Latest release: 17 days ago - 2.91 thousand downloads total - 1 stars on GitHub - 1 maintainer
HicAggR 1.0.0
Set of 3D genomic interaction analysis tools1 version - Latest release: 22 days ago - 82 downloads total - 0 stars on GitHub - 1 maintainer
iNETgrate 1.2.0
Integrates DNA methylation data with gene expression in a single gene network2 versions - Latest release: 14 days ago - 970 downloads total - 65 stars on GitHub - 1 maintainer
martini 1.24.0
GWAS Incorporating Networks3 versions - Latest release: 14 days ago - 7.58 thousand downloads total - 4 stars on GitHub - 1 maintainer
microbiomeMarker 1.10.0
microbiome biomarker analysis toolkit4 versions - Latest release: 14 days ago - 13.5 thousand downloads total - 160 stars on GitHub - 1 maintainer
sccomp 1.8.0
Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data3 versions - Latest release: 18 days ago - 2.66 thousand downloads total - 75 stars on GitHub - 1 maintainer
cTRAP 1.22.0
Identification of candidate causal perturbations from differential gene expression data4 versions - Latest release: 16 days ago - 6.62 thousand downloads total - 5 stars on GitHub - 1 maintainer
Rarr 1.4.0
Read Zarr Files in R3 versions - Latest release: 17 days ago - 2.25 thousand downloads total - 24 stars on GitHub - 1 maintainer
seqArchR 1.8.0
Identify Different Architectures of Sequence Elements3 versions - Latest release: 17 days ago - 1 dependent package - 2.62 thousand downloads total - 1 stars on GitHub - 1 maintainer
MungeSumstats 1.12.0
Standardise summary statistics from GWAS4 versions - Latest release: 21 days ago - 23 thousand downloads total - 64 stars on GitHub - 1 maintainer
structToolbox 1.16.0
Data processing & analysis tools for Metabolomics and other omics3 versions - Latest release: 21 days ago - 1 dependent package - 6.13 thousand downloads total - 7 stars on GitHub - 1 maintainer
RLSeq 1.6.0
RLSeq: An analysis package for R-loop mapping data2 versions - Latest release: 7 months ago - 2.28 thousand downloads total - 2 stars on GitHub - 1 maintainer
hermes 1.6.1 💰
Preprocessing, analyzing, and reporting of RNA-seq data3 versions - Latest release: about 2 months ago - 2.93 thousand downloads total - 11 stars on GitHub - 1 maintainer
CNVMetrics 1.6.0
Copy Number Variant Metrics2 versions - Latest release: 6 months ago - 1.86 thousand downloads total - 5 stars on GitHub - 1 maintainer
RAIDS 1.0.0
Accurate Inference of Genetic Ancestry from Cancer Sequences1 version - Latest release: 7 months ago - 708 downloads total - 5 stars on GitHub - 1 maintainer
sevenC 1.22.0
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs2 versions - Latest release: 6 months ago - 7.1 thousand downloads total - 11 stars on GitHub - 1 maintainer
pram 1.18.0
Pooling RNA-seq datasets for assembling transcript models2 versions - Latest release: 6 months ago - 5.11 thousand downloads total - 1 stars on GitHub - 1 maintainer
EpiCompare 1.6.7
Comparison, Benchmarking & QC of Epigenomic Datasets8 versions - Latest release: about 1 month ago - 2.02 thousand downloads total - 12 stars on GitHub - 1 maintainer
cellmigRation 1.10.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics2 versions - Latest release: 7 months ago - 2.69 thousand downloads total - 0 stars on GitHub - 1 maintainer
orthogene 1.8.0
Interspecies gene mapping2 versions - Latest release: 7 months ago - 1 dependent package - 9.63 thousand downloads total - 33 stars on GitHub - 1 maintainer
Related Keywords
Software
30
r
17
RNASeq
8
bioconductor
8
Transcriptomics
8
bioconductor-package
7
bioinformatics
7
rstats
7
DataImport
6
Genetics
6
Sequencing
6
GeneExpression
6
genomics
5
Visualization
5
Normalization
5
Classification
4
Network
4
DimensionReduction
4
DifferentialExpression
4
StatisticalMethod
4
Preprocessing
4
Clustering
4
metabolomics
3
PrincipalComponent
3
Regression
3
Metabolomics
3
GeneSetEnrichment
3
ChIPSeq
3
FunctionalGenomics
3
Epigenetics
3
rna-seq
3
GraphAndNetwork
3
Coverage
3
BiologicalQuestion
3
FeatureExtraction
2
copy-number-variation
2
DNaseSeq
2
GeneRegulation
2
SingleCell
2
r-language
2
ComparativeGenomics
2
DNA3DStructure
2
DataRepresentation
2
on-disk
2
SystemsBiology
2
WholeGenome
2
GenePrediction
2
HiC
2
Pathways
2
Transcription
2
chip-seq
2
BiomedicalInformatics
2
transcription-factors
2
Annotation
2
ImmunoOncology
2
microbiome
2
exploratory-data-analysis
2
QualityControl
2
ATACSeq
2
GeneticVariability
2
DNASeq
2
CopyNumberVariation
2
enrichment-analysis
2
Microbiome
2
Metagenomics
2
GenomeWideAssociation
2
SNP
2
gwas
2
machine-learning
2
MassSpectrometry
2
WorkflowStep
1
vcf-files
1
summary-statistics
1
dims
1
lc-ms
1
multivariate-analysis
1
unwanted-variation
1
cmap
1
gene-expression
1
l1000
1
ome-zarr
1
out-of-memory
1
zarr
1
MathematicalBiology
1
MotifDiscovery
1
clustering
1
nmf
1
nonnegative-matrix-factorization
1
promoter-sequence-architectures
1
scikit-learn
1
sequence-analysis
1
sequence-architectures
1
unsupervised-machine-learning
1
GenomicVariation
1
database-api
1
qtl
1
standardisation
1
genome-annotation
1
transcript-model
1
MultipleComparison
1