bioconductor.org "r-package" keyword
View the packages on the bioconductor.org package registry that are tagged with the "r-package" keyword.
MotifPeeker 1.0.0
Benchmarking Epigenomic Profiling Methods Using Motif Enrichment1 version - Latest release: 3 months ago - 1.48 thousand downloads total - 2 stars on GitHub - 1 maintainer
hermes 1.12.1 💰
Preprocessing, analyzing, and reporting of RNA-seq data7 versions - Latest release: 2 months ago - 9.67 thousand downloads total - 12 stars on GitHub - 1 maintainer
Rarr 1.8.0
Read Zarr Files in R5 versions - Latest release: 3 months ago - 8.18 thousand downloads total - 42 stars on GitHub - 1 maintainer
HiLDA 1.22.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...5 versions - Latest release: 2 months ago - 1 dependent package - 10.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
seqArchR 1.12.0
Identify Different Architectures of Sequence Elements5 versions - Latest release: 3 months ago - 1 dependent package - 6.34 thousand downloads total - 1 stars on GitHub - 1 maintainer
sccomp 2.0.0
Tests differences in cell-type proportion for single-cell data, robust to outliers5 versions - Latest release: 3 months ago - 7.66 thousand downloads total - 107 stars on GitHub - 1 maintainer
Voyager 1.10.0
From geospatial to spatial omics5 versions - Latest release: 2 months ago - 9.14 thousand downloads total - 95 stars on GitHub - 1 maintainer
sevenC 1.28.0
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs5 versions - Latest release: 3 months ago - 12.1 thousand downloads total - 12 stars on GitHub - 1 maintainer
cTRAP 1.26.0
Identification of candidate causal perturbations from differential gene expression data6 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 5 stars on GitHub - 1 maintainer
CopyNumberPlots 1.24.0
Create Copy-Number Plots using karyoploteR functionality6 versions - Latest release: about 2 months ago - 2 dependent packages - 13.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
MsDataHub 1.8.0
Mass Spectrometry Data on ExperimentHub5 versions - Latest release: 2 months ago - 2 dependent packages - 5.51 thousand downloads total - 1 stars on GitHub - 1 maintainer
MungeSumstats 1.16.0
Standardise summary statistics from GWAS7 versions - Latest release: 2 months ago - 41.6 thousand downloads total - 83 stars on GitHub - 1 maintainer
RAIDS 1.6.1
Robust Ancestry Inference using Data Synthesis4 versions - Latest release: 3 months ago - 4.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
decoupleR 2.14.0
decoupleR: Ensemble of computational methods to infer biological activities from omics data6 versions - Latest release: 2 months ago - 3 dependent packages - 54.6 thousand downloads total - 256 stars on GitHub - 1 maintainer
vmrseq 1.0.1
Probabilistic Modeling of Single-cell Methylation Heterogeneity2 versions - Latest release: about 2 months ago - 597 downloads total - 9 stars on GitHub - 1 maintainer
TMSig 1.2.0
Tools for Molecular Signatures2 versions - Latest release: 3 months ago - 1.72 thousand downloads total - 4 stars on GitHub - 1 maintainer
orthogene 1.14.0
Interspecies gene mapping5 versions - Latest release: 3 months ago - 1 dependent package - 19.7 thousand downloads total - 43 stars on GitHub - 1 maintainer
cellmigRation 1.16.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics5 versions - Latest release: 3 months ago - 6.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
POMA 1.18.0
Tools for Omics Data Analysis5 versions - Latest release: 3 months ago - 1 dependent package - 10.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
CNVMetrics 1.12.0
Copy Number Variant Metrics5 versions - Latest release: 3 months ago - 5.45 thousand downloads total - 4 stars on GitHub - 1 maintainer
fobitools 1.16.0
Tools for Manipulating the FOBI Ontology5 versions - Latest release: 3 months ago - 6.81 thousand downloads total - 1 stars on GitHub - 1 maintainer
pram 1.24.0
Pooling RNA-seq datasets for assembling transcript models5 versions - Latest release: 3 months ago - 9.18 thousand downloads total - 1 stars on GitHub - 1 maintainer
consensusSeekeR 1.36.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...5 versions - Latest release: 3 months ago - 2 dependent packages - 16.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
structToolbox 1.20.0
Data processing & analysis tools for Metabolomics and other omics7 versions - Latest release: 3 months ago - 1 dependent package - 11.3 thousand downloads total - 10 stars on GitHub - 1 maintainer
CBEA 1.8.0
Competitive Balances for Taxonomic Enrichment Analysis in R5 versions - Latest release: 3 months ago - 5.33 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
8 versions - Latest release: 3 months ago - 5 dependent packages - 265 thousand downloads total - 114 stars on GitHub - 1 maintainer
glmGamPoi 1.20.0
Fit a Gamma-Poisson Generalized Linear Model8 versions - Latest release: 3 months ago - 5 dependent packages - 265 thousand downloads total - 114 stars on GitHub - 1 maintainer
target 1.22.0
Predict Combined Function of Transcription Factors5 versions - Latest release: 3 months ago - 8.55 thousand downloads total - 5 stars on GitHub - 1 maintainer
iNETgrate 1.6.0
Integrates DNA methylation data with gene expression in a single gene network4 versions - Latest release: 3 months ago - 4.25 thousand downloads total - 65 stars on GitHub - 1 maintainer
EpiCompare 1.12.0
Comparison, Benchmarking & QC of Epigenomic Datasets13 versions - Latest release: 3 months ago - 4.63 thousand downloads total - 17 stars on GitHub - 1 maintainer
enrichViewNet 1.6.0
From functional enrichment results to biological networks4 versions - Latest release: 3 months ago - 4.08 thousand downloads total - 5 stars on GitHub - 1 maintainer
martini 1.28.0
GWAS Incorporating Networks5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
microbiomeMarker 1.12.2 removed
microbiome biomarker analysis toolkit7 versions - Latest release: 4 months ago - 20.2 thousand downloads total - 173 stars on GitHub - 1 maintainer
HicAggR 1.2.0
Set of 3D genomic interaction analysis tools3 versions - Latest release: 8 months ago - 1.59 thousand downloads total - 1 stars on GitHub - 1 maintainer
RLSeq 1.6.0 removed
RLSeq: An analysis package for R-loop mapping data3 versions - Latest release: almost 2 years ago - 2.67 thousand downloads total - 2 stars on GitHub - 1 maintainer
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Software
34
r
18
bioconductor
9
Genetics
8
bioconductor-package
8
Sequencing
7
RNASeq
7
Transcriptomics
7
rstats
7
bioinformatics
7
DataImport
6
Visualization
6
DifferentialExpression
5
GeneExpression
5
ChIPSeq
5
Epigenetics
5
genomics
5
GeneSetEnrichment
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StatisticalMethod
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GraphAndNetwork
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Regression
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Preprocessing
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Normalization
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BiologicalQuestion
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Clustering
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DimensionReduction
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Coverage
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4
FunctionalGenomics
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3
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SingleCell
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transcription-factors
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ImmunoOncology
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GenePrediction
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CopyNumberVariation
2
copy-number-variation
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MassSpectrometry
2
on-disk
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SystemsBiology
2
GeneRegulation
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FeatureExtraction
2
DNAMethylation
2
DNaseSeq
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DNASeq
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ATACSeq
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Spatial
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Bayesian
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r-language
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MotifDiscovery
2
DataRepresentation
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machine-learning
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dimension-reduction
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obofoundry
1
data-visualization
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DecisionTree
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ontology
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statistical-analysis
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