bioconductor.org "r-package" keyword
Rarr 2.0.1
Read Zarr Files in R9 versions - Latest release: 4 months ago - 26.5 thousand downloads total - 54 stars on GitHub - 1 maintainer
cTRAP 1.30.0
Identification of candidate causal perturbations from differential gene expression data8 versions - Latest release: 5 months ago - 29 thousand downloads total - 9 stars on GitHub - 1 maintainer
sccomp 2.4.0
Differential Composition and Variability Analysis for Single-Cell Data7 versions - Latest release: 5 months ago - 23.6 thousand downloads total - 134 stars on GitHub - 1 maintainer
CopyNumberPlots 1.28.0
Create Copy-Number Plots using karyoploteR functionality8 versions - Latest release: 5 months ago - 2 dependent packages - 29.3 thousand downloads total - 7 stars on GitHub - 1 maintainer
consensusSeekeR 1.40.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...7 versions - Latest release: 5 months ago - 2 dependent packages - 32.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
13 versions - Latest release: 27 days ago - 69 dependent packages - 3.68 million downloads total - 74 stars on GitHub - 1 maintainer
rhdf5 2.56.1
R Interface to HDF513 versions - Latest release: 27 days ago - 69 dependent packages - 3.68 million downloads total - 74 stars on GitHub - 1 maintainer
decoupleR 2.17.0
decoupleR: Ensemble of computational methods to infer biological activities from omics data8 versions - Latest release: 5 months ago - 3 dependent packages - 121 thousand downloads total - 310 stars on GitHub - 1 maintainer
LACHESIS 1.0.0
Functions used to analyze early tumor evolution from whole genome sequencing data1 version - Latest release: 6 months ago - 7.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
fobitools 1.20.0
Tools for Manipulating the FOBI Ontology7 versions - Latest release: 4 months ago - 14.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
EpiCompare 1.16.0
Comparison, Benchmarking & QC of Epigenomic Datasets16 versions - Latest release: 5 months ago - 13.2 thousand downloads total - 19 stars on GitHub - 1 maintainer
vmrseq 1.4.0
Probabilistic Modeling of Single-cell Methylation Heterogeneity4 versions - Latest release: 5 months ago - 6.32 thousand downloads total - 11 stars on GitHub - 1 maintainer
MotifPeeker 1.4.0
Benchmarking Epigenomic Profiling Methods Using Motif Enrichment3 versions - Latest release: 5 months ago - 6.29 thousand downloads total - 3 stars on GitHub - 1 maintainer
MsDataHub 1.12.1
Mass Spectrometry Data on ExperimentHub8 versions - Latest release: about 2 months ago - 2 dependent packages - 17.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
microbiomeMarker 1.12.2 removed
microbiome biomarker analysis toolkit7 versions - Latest release: over 1 year ago - 20.2 thousand downloads total - 199 stars on GitHub - 1 maintainer
hermes 1.16.0 💰
Preprocessing, analyzing, and reporting of RNA-seq data9 versions - Latest release: 5 months ago - 18.7 thousand downloads total - 12 stars on GitHub - 1 maintainer
TMSig 1.6.0
Tools for Molecular Signatures4 versions - Latest release: 5 months ago - 8.18 thousand downloads total - 4 stars on GitHub - 1 maintainer
pram 1.28.0
Pooling RNA-seq datasets for assembling transcript models7 versions - Latest release: 5 months ago - 18.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
sevenC 1.32.0
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs7 versions - Latest release: 5 months ago - 22 thousand downloads total - 13 stars on GitHub - 1 maintainer
epiRomics 1.0.0
Epigenomic Analysis Package Built for R (epiRomics)1 version - Latest release: 6 months ago - 3.01 thousand downloads total - 6 stars on GitHub - 1 maintainer
target 1.26.0
Predict Combined Function of Transcription Factors7 versions - Latest release: 5 months ago - 17.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
HiLDA 1.26.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...7 versions - Latest release: 5 months ago - 1 dependent package - 18.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
structToolbox 1.24.0
Data processing & analysis tools for Metabolomics and other omics10 versions - Latest release: 5 months ago - 1 dependent package - 20.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
8 versions - Latest release: 5 months ago - 226 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.68.0
Quality metrics report for microarray data sets8 versions - Latest release: 5 months ago - 226 thousand downloads total - 1 stars on GitHub - 1 maintainer
cellmigRation 1.20.0
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics7 versions - Latest release: 5 months ago - 13.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
HicAggR 1.8.0
Set of 3D genomic interaction analysis tools4 versions - Latest release: about 2 months ago - 9.86 thousand downloads total - 1 stars on GitHub - 1 maintainer
orthogene 1.18.1
Gene mapping made easy9 versions - Latest release: 5 months ago - 1 dependent package - 39.5 thousand downloads total - 58 stars on GitHub - 1 maintainer
CNVMetrics 1.16.0
Copy Number Variant Metrics8 versions - Latest release: 6 months ago - 13.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
enrichViewNet 1.10.0
From functional enrichment results to biological networks8 versions - Latest release: 4 months ago - 10.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
Voyager 1.14.0
From geospatial to spatial omics7 versions - Latest release: 5 months ago - 24.6 thousand downloads total - 105 stars on GitHub - 1 maintainer
iNETgrate 1.10.0
Integrates DNA methylation data with gene expression in a single gene network7 versions - Latest release: 5 months ago - 16.1 thousand downloads total - 65 stars on GitHub - 1 maintainer
CBEA 1.8.0 removed
Competitive Balances for Taxonomic Enrichment Analysis in R5 versions - Latest release: over 1 year ago - 5.49 thousand downloads total - 4 stars on GitHub - 1 maintainer
RLSeq 1.6.0 removed
RLSeq: An analysis package for R-loop mapping data3 versions - Latest release: about 3 years ago - 2.67 thousand downloads total - 2 stars on GitHub - 1 maintainer
seqArchR 1.14.0 removed
Identify Different Architectures of Sequence Elements6 versions - Latest release: 11 months ago - 1 dependent package - 8.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
markeR 1.2.0
An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers2 versions - Latest release: 6 months ago - 8.29 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
10 versions - Latest release: 5 months ago - 5 dependent packages - 474 thousand downloads total - 126 stars on GitHub - 1 maintainer
glmGamPoi 1.24.0
Fit a Gamma-Poisson Generalized Linear Model10 versions - Latest release: 5 months ago - 5 dependent packages - 474 thousand downloads total - 126 stars on GitHub - 1 maintainer
POMA 1.22.0
Tools for Omics Data Analysis7 versions - Latest release: 5 months ago - 1 dependent package - 23.8 thousand downloads total - 15 stars on GitHub - 1 maintainer
martini 1.32.0
GWAS Incorporating Networks7 versions - Latest release: 5 months ago - 20.6 thousand downloads total - 4 stars on GitHub - 1 maintainer
RAIDS 1.10.0
Robust Ancestry Inference using Data Synthesis6 versions - Latest release: 5 months ago - 10.6 thousand downloads total - 7 stars on GitHub - 1 maintainer
Related Keywords
Software
38
r
18
bioconductor
12
Sequencing
9
Transcriptomics
8
RNASeq
8
Visualization
8
bioconductor-package
7
DataImport
7
Genetics
7
rstats
7
ChIPSeq
6
GeneExpression
6
bioinformatics
6
Epigenetics
6
StatisticalMethod
5
DifferentialExpression
5
FunctionalGenomics
5
Classification
5
GeneSetEnrichment
5
Coverage
4
BiologicalQuestion
4
Clustering
4
genomics
4
DimensionReduction
4
Normalization
4
QualityControl
4
GraphAndNetwork
4
chip-seq
4
Network
4
Transcription
4
rna-seq
4
Regression
4
ATACSeq
3
Metabolomics
3
Pathways
3
transcription-factors
3
WholeGenome
3
metabolomics
3
Metagenomics
3
MultipleComparison
3
GeneRegulation
3
PrincipalComponent
3
Preprocessing
3
SingleCell
3
microbiome
2
MassSpectrometry
2
epigenetics
2
epigenomics
2
GeneticVariability
2
Bayesian
2
copy-number-variation
2
OneChannel
2
gene-sets
2
DNaseSeq
2
DNASeq
2
CopyNumberVariation
2
FeatureExtraction
2
DNAMethylation
2
data-visualization
2
GenePrediction
2
exploratory-data-analysis
2
machine-learning
2
BiomedicalInformatics
2
on-disk
2
SystemsBiology
2
Spatial
2
Annotation
2
MotifDiscovery
2
ImmunoOncology
2
transcriptomics
2
SomaticMutation
2
Survival
2
HiC
2
whole-genome-sequencing
2
DataRepresentation
2
gene-expression
2
r-language
2
enrichment-analysis
2
Microbiome
2
DNA3DStructure
2
rna-sequencing
1
benchmark
1
benchmarking
1
comparison
1
genetics
1
epigenomics-workflow
1
BatchEffect
1
genome-annotation
1
transcript-model
1
gamma-poisson
1
glm
1
negative-binomial-regression
1
regression
1
statistical-engineering
1
cmap
1
l1000
1
cnv
1
metrics
1
package
1